Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 9 9 N 1.29948 * 126.28671 * 285.02918 * 8 2 1 10 10 O 1.21303 * 110.25093 * 179.97438 * 9 8 2 11 11 C 1.33637 * 109.81010 * 359.97438 * 10 9 8 12 12 C 1.50707 * 126.55133 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47326 * 269.98268 * 12 11 10 14 14 C 1.52993 * 109.47068 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47070 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99935 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99937 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47284 * 59.99643 * 19 17 15 21 21 H 1.48496 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47016 * 299.99898 * 19 17 15 23 23 N 1.31133 * 106.89856 * 359.77207 * 11 10 9 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 28 28 H 0.97000 * 119.99339 * 179.97438 * 6 5 4 29 29 H 0.96995 * 120.00015 * 359.72369 * 6 5 4 30 30 H 1.09004 * 109.46397 * 29.97956 * 12 11 10 31 31 H 1.09001 * 109.47110 * 149.97293 * 12 11 10 32 32 H 1.09001 * 109.46681 * 299.99470 * 13 12 11 33 33 H 1.09001 * 109.47306 * 59.99359 * 13 12 11 34 34 H 1.09003 * 109.47439 * 299.99848 * 14 13 12 35 35 H 1.09001 * 109.47399 * 59.99638 * 14 13 12 36 36 H 0.97006 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 7 2.5958 -0.6536 3.4578 7 8 1.8582 1.1616 2.4116 8 6 2.0324 -0.7104 -1.2304 9 7 2.0327 -1.9943 -1.4309 10 8 2.5028 -2.2491 -2.5197 11 6 2.8572 -1.1176 -3.1360 12 6 3.4788 -0.9972 -4.5036 13 6 5.0028 -1.0467 -4.3774 14 6 5.6337 -0.9252 -5.7659 15 6 7.1348 -0.9733 -5.6414 16 1 7.5930 -1.0795 -4.6692 17 6 7.9233 -0.8807 -6.7687 18 7 7.3655 -0.7509 -7.9526 19 14 9.7841 -0.9396 -6.6145 20 1 10.1891 -2.2285 -5.9982 21 1 10.3965 -0.8218 -7.9621 22 1 10.2457 0.1841 -5.7604 23 7 2.5568 -0.1317 -2.3253 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6316 1.1527 28 1 2.6887 -0.1695 4.2932 29 1 2.8224 -1.5957 3.4153 30 1 3.1393 -1.8216 -5.1308 31 1 3.1821 -0.0508 -4.9556 32 1 5.3423 -0.2224 -3.7502 33 1 5.2994 -1.9932 -3.9254 34 1 5.2942 -1.7497 -6.3928 35 1 5.3371 0.0211 -6.2182 36 1 7.9203 -0.6854 -8.7456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118390620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = -11.085493 kcal Electronic energy + Delta-G solvation = -19601.382280 eV Core-core repulsion = 16315.231643 eV Total energy + Delta-G solvation = -3286.150637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.71058 -41.09141 -37.83817 -37.07275 -35.82853 -34.87190 -34.46720 -32.75238 -31.15106 -29.48374 -26.27004 -26.04273 -24.27518 -22.96827 -22.16175 -21.45507 -19.75000 -19.13087 -18.72270 -18.33903 -18.06687 -16.66786 -16.50075 -16.12628 -16.05248 -15.78854 -15.38888 -14.97512 -14.41177 -14.35153 -14.05002 -13.79123 -13.30523 -13.11486 -12.90494 -12.64806 -12.61221 -12.51771 -12.43895 -12.15960 -11.62073 -11.54138 -11.49980 -11.29577 -10.88119 -10.81543 -10.50634 -10.30004 -8.17281 -6.26684 -0.00137 0.97516 1.43211 1.44693 1.52539 1.70890 1.72459 2.02391 2.42783 2.45668 2.92302 3.16995 3.49832 3.71197 3.96074 4.11141 4.22368 4.24145 4.37356 4.58598 4.69153 4.76331 4.79161 4.98488 5.04516 5.07069 5.19557 5.21098 5.54925 5.70804 5.77541 5.89069 5.95626 6.27989 6.88496 6.89638 7.01119 7.42032 7.51651 8.93868 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003231 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.644064 B = 8664.581852 C = 9301.597134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.259 3.741 3 H 0.103 0.897 4 N -0.732 5.732 5 C 0.707 3.293 6 N -0.844 5.844 7 O -0.634 6.634 8 C 0.159 3.841 9 N -0.384 5.384 10 O 0.075 5.925 11 C 0.214 3.786 12 C -0.024 4.024 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.056 0.944 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.271 1.271 23 N -0.501 5.501 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.410 0.590 28 H 0.424 0.576 29 H 0.414 0.586 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.009 0.991 35 H 0.002 0.998 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 -3.922 18.065 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.151 3.849 3 H 0.121 0.879 4 N -0.390 5.390 5 C 0.405 3.595 6 N -0.413 5.413 7 O -0.516 6.516 8 C -0.115 4.115 9 N -0.094 5.094 10 O 0.018 5.982 11 C -0.005 4.005 12 C -0.062 4.062 13 C -0.131 4.131 14 C -0.011 4.011 15 C -0.584 4.584 16 H 0.074 0.926 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.196 1.196 23 N -0.235 5.235 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.246 0.754 28 H 0.258 0.742 29 H 0.245 0.755 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.331 -3.092 18.495 23.008 hybrid contribution 1.400 -0.608 -0.163 1.535 sum -11.931 -3.700 18.332 22.183 Atomic orbital electron populations 1.22112 0.91299 1.03484 1.03884 1.18776 0.95320 0.94897 0.75935 0.87860 1.44924 1.71733 1.14270 1.08028 1.16017 0.77878 0.84394 0.81240 1.42755 1.71814 1.15670 1.11053 1.90960 1.59122 1.16169 1.85305 1.25981 0.99963 0.87646 0.97872 1.74488 1.17846 1.17496 0.99530 1.85287 1.56303 1.35277 1.21317 1.29266 0.93303 0.79188 0.98783 1.20527 0.94836 1.07132 0.83730 1.21434 0.91206 1.01280 0.99179 1.18986 0.94102 0.96099 0.91962 1.21657 0.93499 1.50048 0.93162 0.92586 1.25857 1.03573 0.94885 0.95098 1.70053 1.37190 1.51057 0.98605 0.85618 0.79862 0.79021 0.77264 1.19263 1.20877 1.19612 1.71944 1.18006 1.30919 1.02630 0.90447 0.91167 0.90379 0.75358 0.74203 0.75531 0.85827 0.86501 0.93251 0.92196 0.97262 0.97921 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.47 71.98 0.68 -2.13 16 2 C 0.26 5.95 3.12 44.24 0.14 6.09 16 3 H 0.10 2.76 7.58 -2.39 -0.02 2.75 16 4 N -0.73 -14.14 5.07 -461.43 -2.34 -16.48 16 5 C 0.71 14.82 8.80 179.05 1.58 16.40 16 6 N -0.84 -9.48 8.88 -184.74 -1.64 -11.12 16 7 O -0.63 -19.03 16.84 -3.96 -0.07 -19.10 16 8 C 0.16 4.23 7.01 138.46 0.97 5.20 16 9 N -0.38 -10.06 11.86 -60.32 -0.72 -10.78 16 10 O 0.08 2.05 11.31 74.88 0.85 2.90 16 11 C 0.21 6.05 7.77 88.38 0.69 6.74 16 12 C -0.02 -0.66 5.84 29.85 0.17 -0.48 16 13 C -0.09 -3.38 5.13 30.59 0.16 -3.22 16 14 C 0.03 1.23 4.97 29.85 0.15 1.38 16 15 C -0.55 -29.76 9.11 25.60 0.23 -29.53 16 16 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 19 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 N -0.50 -15.12 11.55 -303.19 -3.50 -18.62 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.41 6.45 8.37 -92.71 -0.78 5.68 16 28 H 0.42 3.78 8.93 -92.71 -0.83 2.95 16 29 H 0.41 2.13 8.84 -92.71 -0.82 1.31 16 30 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.26 14.62 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -69.69 319.39 -1.17 -70.86 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -1.29 Total: 10.11 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.23 Total: 1.13 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -7.91 Total: -111.15 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.78 Total: -16.20 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.69 -1.17 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118390620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.777 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds