Wall clock time and date at job start Mon Mar 30 2020 04:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47156 * 2 1 4 4 C 1.34223 * 116.99971 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00394 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00272 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47097 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.62606 * 305.37811 * 7 6 4 9 9 C 1.53236 * 109.62369 * 185.00058 * 7 6 4 10 10 C 1.52952 * 109.40476 * 185.46460 * 9 7 6 11 11 C 1.52964 * 109.81760 * 63.59815 * 10 9 7 12 12 C 1.53224 * 109.40302 * 296.40258 * 11 10 9 13 13 H 1.08998 * 109.62715 * 294.71882 * 12 11 10 14 14 C 1.52998 * 109.62463 * 174.34197 * 12 11 10 15 15 C 1.50706 * 109.47348 * 175.37896 * 14 12 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 12 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.51270 * 108.69724 * 54.53185 * 12 11 10 24 24 O 1.20760 * 120.84688 * 128.72806 * 23 12 11 25 25 H 1.08995 * 109.47125 * 59.99528 * 1 2 3 26 26 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47000 * 299.99732 * 1 2 3 28 28 H 1.08998 * 109.47000 * 240.00268 * 2 1 3 29 29 H 1.09002 * 109.46852 * 120.00209 * 2 1 3 30 30 H 1.08994 * 109.46779 * 60.00066 * 6 4 3 31 31 H 1.09002 * 109.46933 * 300.00723 * 6 4 3 32 32 H 1.09003 * 109.47952 * 65.48693 * 9 7 6 33 33 H 1.09003 * 109.49386 * 305.45606 * 9 7 6 34 34 H 1.09005 * 109.41526 * 303.49400 * 10 9 7 35 35 H 1.09004 * 109.36010 * 183.66963 * 10 9 7 36 36 H 1.09004 * 109.48373 * 176.42070 * 11 10 9 37 37 H 1.09001 * 109.47848 * 56.38180 * 11 10 9 38 38 H 1.09001 * 109.47671 * 55.38105 * 14 12 11 39 39 H 1.09006 * 109.47297 * 295.37825 * 14 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7832 2.2441 0.8378 9 6 6.0379 4.2661 0.1275 10 6 7.5596 4.1947 -0.0098 11 6 7.9314 3.6955 -1.4071 12 6 7.4134 2.2653 -1.5913 13 1 7.9321 1.5967 -0.9043 14 6 7.6574 1.8119 -3.0320 15 6 7.2512 0.3682 -3.1800 16 1 6.8586 -0.1721 -2.3312 17 6 7.3807 -0.2629 -4.3989 18 7 7.8592 0.3948 -5.4324 19 14 6.8778 -2.0526 -4.5821 20 1 8.0413 -2.9266 -4.2860 21 1 5.7762 -2.3568 -3.6339 22 1 6.4161 -2.2972 -5.9722 23 6 5.9298 2.2452 -1.2967 24 8 5.1497 1.7576 -2.0790 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5846 3.4692 0.8911 31 1 3.5851 3.4699 -0.8888 32 1 5.7799 4.6820 1.1015 33 1 5.6314 4.9023 -0.6587 34 1 7.9591 3.5094 0.7379 35 1 7.9834 5.1870 0.1451 36 1 9.0154 3.7071 -1.5208 37 1 7.4800 4.3451 -2.1571 38 1 8.7153 1.9180 -3.2721 39 1 7.0671 2.4269 -3.7114 40 1 8.1206 1.3240 -5.3372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034182303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:34 Heat of formation + Delta-G solvation = -179.727648 kcal Electronic energy + Delta-G solvation = -21424.984141 eV Core-core repulsion = 18202.768223 eV Total energy + Delta-G solvation = -3222.215917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.87595 -40.72809 -37.72891 -37.32978 -36.00004 -34.17206 -32.70532 -31.53095 -28.41900 -27.70159 -24.98496 -24.35978 -22.91266 -22.18618 -21.50519 -19.91287 -18.93165 -18.65615 -17.92001 -17.31920 -16.86790 -16.76286 -15.77321 -15.57598 -15.18643 -15.05897 -14.73755 -14.51230 -14.04787 -13.97943 -13.71937 -13.59536 -13.36924 -13.17020 -12.81410 -12.78916 -12.56319 -12.46328 -12.40140 -12.11115 -12.08492 -11.88387 -11.57556 -11.56590 -11.49965 -11.35476 -10.61972 -10.58099 -9.97802 -8.68926 -6.32410 1.23605 1.32442 1.38271 1.49933 1.68269 1.70997 2.49389 3.09149 3.18202 3.52796 3.70138 3.92706 3.94541 4.02101 4.05212 4.09529 4.25893 4.29228 4.34045 4.45129 4.48102 4.64543 4.72349 4.82162 4.86137 4.87866 4.95239 5.04766 5.10737 5.12826 5.17321 5.28756 5.33912 5.39145 5.48140 5.52219 5.99001 6.18425 6.59017 6.76037 6.92292 7.41760 8.72720 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.007719 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.987442 B = 3626.470157 C = 5545.678734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.456 3.544 5 O -0.541 6.541 6 C -0.096 4.096 7 C -0.122 4.122 8 H 0.112 0.888 9 C -0.098 4.098 10 C -0.116 4.116 11 C -0.106 4.106 12 C -0.127 4.127 13 H 0.085 0.915 14 C 0.026 3.974 15 C -0.579 4.579 16 H 0.027 0.973 17 C -0.043 4.043 18 N -0.942 5.942 19 Si 1.111 2.889 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.358 3.642 24 O -0.474 6.474 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.161 0.839 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.055 0.945 38 H -0.002 1.002 39 H -0.020 1.020 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 9.404 17.762 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.300 3.700 5 O -0.430 6.430 6 C -0.133 4.133 7 C -0.141 4.141 8 H 0.130 0.870 9 C -0.135 4.135 10 C -0.153 4.153 11 C -0.144 4.144 12 C -0.146 4.146 13 H 0.103 0.897 14 C -0.011 4.011 15 C -0.617 4.617 16 H 0.046 0.954 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.933 3.067 20 H -0.187 1.187 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.233 3.767 24 O -0.347 6.347 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.179 0.821 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.016 0.984 39 H -0.001 1.001 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.404 7.590 16.269 20.749 hybrid contribution 0.411 0.541 0.354 0.766 sum -9.993 8.131 16.623 21.031 Atomic orbital electron populations 1.21796 0.89591 1.04391 1.03956 1.23213 0.97607 0.79750 1.01627 1.86457 1.24302 1.33117 1.84140 1.24387 0.80556 0.93927 0.71087 1.90698 1.61166 1.44861 1.46314 1.21454 0.93993 0.89624 1.08182 1.21931 0.94193 1.00941 0.97052 0.87010 1.21623 0.95211 0.91538 1.05131 1.21581 0.95737 1.03124 0.94853 1.21625 1.01226 0.92270 0.99239 1.21841 0.95389 0.99310 0.98091 0.89695 1.19012 0.94153 0.95252 0.92701 1.22200 1.43952 0.97822 0.97764 0.95416 1.27168 0.94729 1.09684 0.92362 1.70883 1.43148 1.11635 1.32407 0.83014 0.76853 0.70812 0.75989 1.18739 1.21682 1.20177 1.25198 0.91004 0.73541 0.86924 1.90377 1.59113 1.35109 1.50069 0.91640 0.88365 0.90090 0.93805 0.91112 0.82148 0.87317 0.86317 0.90914 0.90678 0.88102 0.90969 0.92636 0.98375 1.00146 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.29 71.98 0.74 -1.71 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -10.80 10.22 -51.35 -0.52 -11.33 16 4 C 0.46 15.26 7.05 71.24 0.50 15.76 16 5 O -0.54 -23.23 14.16 28.32 0.40 -22.83 16 6 C -0.10 -2.29 4.99 29.85 0.15 -2.14 16 7 C -0.12 -3.28 2.10 -11.26 -0.02 -3.31 16 8 H 0.11 2.92 7.95 -2.39 -0.02 2.90 16 9 C -0.10 -1.70 5.24 30.66 0.16 -1.54 16 10 C -0.12 -2.24 5.81 30.57 0.18 -2.06 16 11 C -0.11 -3.21 5.24 30.66 0.16 -3.05 16 12 C -0.13 -5.43 2.42 -11.28 -0.03 -5.45 16 13 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 14 C 0.03 1.45 3.46 29.85 0.10 1.55 16 15 C -0.58 -37.00 7.65 25.60 0.20 -36.80 16 16 H 0.03 1.83 7.52 -2.91 -0.02 1.81 16 17 C -0.04 -2.79 5.46 84.65 0.46 -2.33 16 18 N -0.94 -63.13 13.65 21.45 0.29 -62.84 16 19 Si 1.11 57.61 29.90 68.60 2.05 59.67 16 20 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 22 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 23 C 0.36 14.96 5.51 29.48 0.16 15.12 16 24 O -0.47 -25.00 13.06 17.39 0.23 -24.77 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 1.40 8.13 -2.39 -0.02 1.38 16 29 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 2.64 8.10 -2.39 -0.02 2.62 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.00 -0.11 8.01 -2.39 -0.02 -0.13 16 39 H -0.02 -1.21 7.97 -2.38 -0.02 -1.23 16 40 H 0.25 17.09 7.22 -92.71 -0.67 16.42 16 Total: -1.00 -88.48 326.31 6.76 -81.72 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.10 Total: 4.52 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.21 Total: -24.14 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.29 Total: -62.84 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: 0.10 Total: -58.93 kcal Atomic # 14 Polarization: 57.61 SS G_CDS: 2.05 Total: 59.67 kcal Total: -88.48 6.76 -81.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034182303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.003 kcal (2) G-P(sol) polarization free energy of solvation -88.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds