Wall clock time and date at job start Mon Mar 30 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31010 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46895 * 299.99165 * 3 2 1 6 6 H 1.48499 * 109.47385 * 59.99680 * 3 2 1 7 7 C 1.39591 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00039 * 180.02562 * 9 7 2 11 11 O 1.21501 * 120.00188 * 359.97438 * 10 9 7 12 12 C 1.48832 * 120.00082 * 180.02562 * 10 9 7 13 13 O 1.21443 * 120.00204 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00082 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00234 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47480 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 0.97005 * 120.00145 * 0.02562 * 1 2 3 24 24 H 0.97006 * 120.00111 * 359.97438 * 9 7 2 25 25 H 0.96996 * 120.00407 * 359.97438 * 14 12 10 26 26 H 1.08997 * 109.47622 * 59.99100 * 15 14 12 27 27 H 1.09006 * 109.47216 * 299.99688 * 15 14 12 28 28 H 1.09008 * 109.47149 * 59.99636 * 16 15 14 29 29 H 1.08997 * 109.47163 * 299.99707 * 16 15 14 30 30 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 31 31 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 32 32 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 33 33 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 35 35 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 36 36 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 39 39 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 40 40 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7041 1.3462 0.0006 5 1 1.8856 2.3963 -1.2126 6 1 1.8854 2.3965 1.2124 7 6 2.0080 -1.2089 0.0005 8 1 3.0879 -1.2090 0.0010 9 7 1.3273 -2.3877 0.0005 10 6 2.0011 -3.5549 0.0016 11 8 3.2161 -3.5550 0.0021 12 6 1.2569 -4.8438 0.0010 13 8 0.0425 -4.8438 0.0001 14 7 1.9307 -6.0110 0.0015 15 6 1.1982 -7.2797 0.0015 16 6 2.1923 -8.4427 0.0015 17 6 1.4273 -9.7677 0.0022 18 6 0.6439 -9.9048 -1.3049 19 6 -0.1207 -11.2301 -1.3046 20 6 0.8693 -12.3900 -1.1791 21 6 1.6526 -12.2529 0.1279 22 6 2.4168 -10.9279 0.1278 23 1 -0.4850 0.8401 -0.0004 24 1 0.3573 -2.3877 0.0005 25 1 2.9007 -6.0111 0.0019 26 1 0.5718 -7.3376 -0.8885 27 1 0.5712 -7.3373 0.8914 28 1 2.8191 -8.3850 0.8915 29 1 2.8189 -8.3850 -0.8884 30 1 0.7354 -9.7874 0.8442 31 1 -0.0610 -9.0784 -1.3945 32 1 1.3358 -9.8852 -2.1469 33 1 -0.6784 -11.3280 -2.2360 34 1 -0.8125 -11.2502 -0.4625 35 1 1.5611 -12.3699 -2.0212 36 1 0.3245 -13.3341 -1.1785 37 1 2.3575 -13.0794 0.2175 38 1 0.9607 -12.2729 0.9699 39 1 3.1086 -10.9082 -0.7142 40 1 2.9748 -10.8302 1.0591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037742145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:37 Heat of formation + Delta-G solvation = -133.944344 kcal Electronic energy + Delta-G solvation = -19974.161804 eV Core-core repulsion = 16786.223950 eV Total energy + Delta-G solvation = -3187.937853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30450 -39.80323 -39.06207 -36.70455 -36.02033 -33.65819 -33.29072 -31.60715 -29.37353 -27.73679 -25.37031 -23.89791 -23.10534 -21.89766 -21.08760 -20.56219 -20.32435 -18.74437 -17.67606 -16.88130 -16.86940 -16.33593 -15.88466 -15.79609 -15.71063 -14.97906 -14.88759 -14.81323 -14.61436 -14.19363 -13.68746 -13.55806 -12.98591 -12.95714 -12.91938 -12.60255 -12.57466 -12.31038 -12.18472 -12.08233 -11.94826 -11.72077 -11.68307 -11.29092 -10.94964 -10.81279 -10.28754 -10.24031 -10.17462 -8.66730 -6.11704 0.59425 1.41191 1.45885 1.57336 1.84020 2.29710 2.36796 3.14717 3.28555 3.70249 3.78331 3.89519 4.02758 4.07603 4.18311 4.40897 4.45034 4.50208 4.58684 4.69180 4.69892 4.71675 4.83768 4.99278 5.08393 5.10089 5.22944 5.24864 5.30420 5.32326 5.36293 5.37217 5.45226 5.52251 5.64991 5.67637 6.16297 6.39038 6.81191 7.01972 7.27359 7.79066 8.49460 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.057523 B = 0.002872 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.642995 B = 9747.214680 C =10065.670219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.006 4.006 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.512 5.512 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.516 3.484 13 O -0.568 6.568 14 N -0.694 5.694 15 C 0.116 3.884 16 C -0.118 4.118 17 C -0.078 4.078 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.111 4.111 23 H 0.289 0.711 24 H 0.401 0.599 25 H 0.416 0.584 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -21.353 -0.856 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.299 3.701 13 O -0.448 6.448 14 N -0.346 5.346 15 C -0.007 4.007 16 C -0.155 4.155 17 C -0.097 4.097 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.149 4.149 23 H 0.099 0.901 24 H 0.235 0.765 25 H 0.253 0.747 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.723 -21.254 -0.858 21.341 hybrid contribution -0.047 0.893 -0.019 0.895 sum 1.676 -20.360 -0.877 20.448 Atomic orbital electron populations 1.69557 1.07861 1.30781 1.45225 1.26568 0.96519 1.03539 0.94384 0.84627 0.78267 0.75186 0.78745 1.18723 1.19036 1.19044 1.20020 0.93684 0.83053 1.50694 0.88304 1.41674 1.10250 1.04843 1.57780 1.19633 0.87874 0.85266 0.89790 1.90541 1.13790 1.87307 1.59026 1.20097 0.87021 0.86068 0.76927 1.90677 1.14640 1.88372 1.51103 1.45683 1.11574 1.04610 1.72774 1.21660 0.95527 0.81338 1.02132 1.21819 0.97528 0.92391 1.03803 1.21052 0.97209 0.93117 0.98355 1.21685 0.99081 0.97602 0.97490 1.21535 0.97942 0.94479 1.01793 1.21542 0.98086 0.98053 0.97955 1.21523 0.99146 0.97216 0.97759 1.21547 0.97396 0.93674 1.02275 0.90081 0.76491 0.74678 0.91589 0.91888 0.90181 0.90437 0.91020 0.92668 0.91832 0.91949 0.92165 0.92038 0.91585 0.91287 0.92104 0.91723 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.57 13.03 21.77 0.28 -48.28 16 2 C -0.01 -0.31 5.51 85.14 0.47 0.16 16 3 Si 1.01 40.94 29.56 68.60 2.03 42.97 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.34 -19.57 9.67 84.36 0.82 -18.76 16 8 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 9 N -0.51 -28.48 5.25 -308.88 -1.62 -30.10 16 10 C 0.39 20.25 7.82 87.08 0.68 20.93 16 11 O -0.62 -33.80 16.03 -3.72 -0.06 -33.86 16 12 C 0.52 22.93 7.87 87.08 0.69 23.62 16 13 O -0.57 -27.38 16.47 -3.54 -0.06 -27.44 16 14 N -0.69 -23.43 5.55 -465.01 -2.58 -26.01 16 15 C 0.12 3.04 5.43 86.38 0.47 3.51 16 16 C -0.12 -2.15 4.80 30.59 0.15 -2.01 16 17 C -0.08 -1.24 2.19 -10.79 -0.02 -1.26 16 18 C -0.12 -2.00 4.96 30.59 0.15 -1.84 16 19 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 20 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 21 C -0.12 -1.43 5.92 30.58 0.18 -1.25 16 22 C -0.11 -1.47 5.20 30.58 0.16 -1.31 16 23 H 0.29 14.26 8.30 -92.70 -0.77 13.49 16 24 H 0.40 22.55 7.35 -92.70 -0.68 21.87 16 25 H 0.42 13.02 7.93 -92.71 -0.74 12.28 16 26 H 0.07 1.80 6.57 -2.39 -0.02 1.79 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.04 6.57 -2.39 -0.02 1.03 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -65.41 328.12 1.72 -63.69 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.37 Total: 40.08 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 4.10 Total: 18.95 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.92 Total: -104.39 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -0.12 Total: -61.30 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -65.41 1.72 -63.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037742145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.256 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds