Wall clock time and date at job start Mon Mar 30 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00122 * 2 1 4 4 H 1.48506 * 109.46810 * 239.99853 * 3 2 1 5 5 H 1.48503 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47153 * 119.99628 * 3 2 1 7 7 C 1.38815 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00072 * 191.25883 * 7 2 1 9 9 N 1.36934 * 119.99592 * 10.97553 * 7 2 1 10 10 C 1.46924 * 120.62690 * 210.32609 * 9 7 2 11 11 C 1.52770 * 109.00739 * 233.58866 * 10 9 7 12 12 C 1.53040 * 109.38161 * 305.58976 * 11 10 9 13 13 N 1.46895 * 109.44879 * 181.25595 * 12 11 10 14 14 C 1.47846 * 111.00344 * 193.58717 * 13 12 11 15 15 C 1.54909 * 104.79646 * 213.63518 * 14 13 12 16 16 C 1.55137 * 101.65550 * 37.06857 * 15 14 13 17 17 C 1.47449 * 111.00385 * 72.74168 * 13 12 11 18 18 H 1.09003 * 109.88588 * 242.66930 * 17 13 12 19 19 C 1.50695 * 109.88322 * 3.68911 * 17 13 12 20 20 O 1.20825 * 120.00026 * 63.34334 * 19 17 13 21 21 O 1.34232 * 120.00091 * 243.33520 * 19 17 13 22 22 C 1.53042 * 109.53887 * 61.24105 * 12 11 10 23 23 C 1.46921 * 120.63041 * 30.61166 * 9 7 2 24 24 H 0.97001 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.59156 * 353.41908 * 10 9 7 26 26 H 1.08996 * 109.58861 * 113.84959 * 10 9 7 27 27 H 1.09008 * 109.56050 * 185.55749 * 11 10 9 28 28 H 1.08992 * 109.36168 * 65.50235 * 11 10 9 29 29 H 1.09005 * 109.45954 * 301.21982 * 12 11 10 30 30 H 1.09004 * 110.36945 * 332.46572 * 14 13 12 31 31 H 1.08997 * 110.37362 * 94.80030 * 14 13 12 32 32 H 1.09001 * 110.99115 * 278.97230 * 15 14 13 33 33 H 1.09004 * 111.02287 * 155.17411 * 15 14 13 34 34 H 1.08993 * 110.70631 * 205.96605 * 16 15 14 35 35 H 1.09001 * 110.70750 * 82.72576 * 16 15 14 36 36 H 0.96705 * 117.00099 * 180.02562 * 21 19 17 37 37 H 1.08995 * 109.49520 * 178.68389 * 22 12 11 38 38 H 1.08999 * 109.49495 * 58.58519 * 22 12 11 39 39 H 1.09004 * 109.58480 * 246.14633 * 23 9 7 40 40 H 1.08993 * 109.58721 * 6.43683 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0747 -1.2111 0.1832 9 7 1.3443 -2.3773 -0.2247 10 6 1.8115 -3.6307 0.3830 11 6 1.9928 -4.6782 -0.7141 12 6 0.6920 -4.8113 -1.5093 13 7 0.8551 -5.8397 -2.5454 14 6 -0.2440 -5.7768 -3.5322 15 6 -0.4758 -7.2473 -3.9606 16 6 -0.2497 -8.0023 -2.6244 17 6 0.8764 -7.1893 -1.9519 18 1 1.8398 -7.6627 -2.1416 19 6 0.6328 -7.1002 -0.4674 20 8 -0.4198 -6.6764 -0.0523 21 8 1.5851 -7.4919 0.3937 22 6 0.3560 -3.4718 -2.1688 23 6 0.1528 -2.4097 -1.0837 24 1 -0.4850 0.8401 -0.0004 25 1 2.7640 -3.4608 0.8849 26 1 1.0743 -3.9844 1.1037 27 1 2.2439 -5.6387 -0.2638 28 1 2.7968 -4.3674 -1.3812 29 1 -0.1168 -5.0982 -0.8371 30 1 -1.1441 -5.3691 -3.0721 31 1 0.0509 -5.1733 -4.3907 32 1 0.2526 -7.5548 -4.7110 33 1 -1.4930 -7.3930 -4.3242 34 1 0.0729 -9.0267 -2.8104 35 1 -1.1533 -7.9863 -2.0150 36 1 1.3827 -7.4163 1.3363 37 1 -0.5580 -3.5736 -2.7539 38 1 1.1754 -3.1724 -2.8222 39 1 -0.7225 -2.6618 -0.4850 40 1 0.0098 -1.4336 -1.5471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038042696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:43 Heat of formation + Delta-G solvation = -50.242974 kcal Electronic energy + Delta-G solvation = -22218.688954 eV Core-core repulsion = 19034.380664 eV Total energy + Delta-G solvation = -3184.308289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21478 -38.45703 -36.78138 -35.98045 -33.34486 -31.24450 -30.50510 -29.19465 -28.63762 -24.81720 -23.79154 -22.58471 -21.86016 -20.62100 -19.90966 -19.22094 -18.07697 -17.04685 -16.55028 -15.99951 -15.60319 -15.03942 -14.71596 -13.94006 -13.49273 -13.32565 -13.15975 -13.14232 -12.94959 -12.76215 -12.14375 -11.86730 -11.68673 -11.65523 -11.39668 -11.02966 -10.92126 -10.86318 -10.72767 -10.66263 -10.42652 -10.22367 -10.10851 -9.87785 -9.52746 -9.35224 -8.43055 -8.15848 -6.58150 -5.73278 -3.20055 2.16555 3.04480 3.41146 3.46008 3.47440 4.01868 4.38761 4.52698 4.57890 4.91345 5.24570 5.25578 5.36417 5.43097 5.48504 5.49552 5.61196 5.65572 5.74442 5.80828 5.98223 6.07105 6.07584 6.17185 6.39268 6.42476 6.51459 6.59009 6.69320 6.71277 6.83502 7.02148 7.09270 7.31109 7.45550 7.75172 7.82910 7.92510 8.52289 9.27344 9.89254 10.47772 11.34993 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005573 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.967843 B = 5022.728623 C = 5487.563817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.133 4.133 12 C 0.045 3.955 13 N -0.497 5.497 14 C 0.038 3.962 15 C -0.126 4.126 16 C -0.131 4.131 17 C 0.080 3.920 18 H 0.111 0.889 19 C 0.471 3.529 20 O -0.505 6.505 21 O -0.515 6.515 22 C -0.132 4.132 23 C 0.174 3.826 24 H 0.254 0.746 25 H 0.054 0.946 26 H 0.012 0.988 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.407 0.593 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -16.502 -5.670 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.022 3.978 11 C -0.173 4.173 12 C -0.062 4.062 13 N -0.223 5.223 14 C -0.089 4.089 15 C -0.164 4.164 16 C -0.170 4.170 17 C -0.029 4.029 18 H 0.129 0.871 19 C 0.313 3.687 20 O -0.392 6.392 21 O -0.327 6.327 22 C -0.172 4.172 23 C 0.047 3.953 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.332 -16.151 -6.185 17.298 hybrid contribution -0.423 0.833 1.113 1.453 sum -0.090 -15.318 -5.073 16.136 Atomic orbital electron populations 1.69972 1.05260 1.25496 1.54426 1.25141 0.95398 0.98350 1.00711 0.86325 0.78794 0.83240 0.78103 1.20994 1.21625 1.20900 1.19160 0.90945 0.84017 1.43922 0.91847 1.43993 1.31302 1.03071 1.52984 1.20769 0.97437 0.87082 0.92498 1.22209 0.96774 0.99333 0.98948 1.22650 0.99018 0.91809 0.92733 1.64420 1.43579 1.00252 1.14091 1.23147 0.93346 0.96503 0.95898 1.22707 1.02222 0.94949 0.96512 1.22830 0.97810 0.99185 0.97136 1.22425 1.01911 0.93766 0.84837 0.87150 1.23892 0.80863 0.73252 0.90697 1.90657 1.27398 1.41202 1.79959 1.84574 1.46851 1.78971 1.22265 1.22357 0.99951 0.94855 1.00018 1.20790 0.88040 0.97097 0.89328 0.93590 0.92714 0.96987 0.92542 0.91455 0.90337 0.92620 0.89477 0.90321 0.90388 0.89932 0.90274 0.73403 0.93252 0.92118 0.96688 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.95 11.01 55.49 0.61 -26.34 16 2 C 0.00 0.06 5.05 -17.43 -0.09 -0.02 16 3 Si 0.91 22.11 29.57 -169.99 -5.03 17.08 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -7.09 9.59 -15.06 -0.14 -7.24 16 8 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 9 N -0.59 -15.53 3.00 -172.58 -0.52 -16.04 16 10 C 0.15 3.35 6.49 -3.93 -0.03 3.32 16 11 C -0.13 -2.55 5.14 -26.83 -0.14 -2.68 16 12 C 0.04 0.83 1.37 -67.67 -0.09 0.74 16 13 N -0.50 -7.59 5.03 -216.75 -1.09 -8.68 16 14 C 0.04 0.51 5.28 -2.30 -0.01 0.50 16 15 C -0.13 -1.24 7.08 -24.59 -0.17 -1.41 16 16 C -0.13 -1.37 6.43 -24.91 -0.16 -1.53 16 17 C 0.08 1.04 3.64 -67.87 -0.25 0.79 16 18 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.47 6.82 4.42 36.00 0.16 6.98 16 20 O -0.50 -8.89 14.60 -18.75 -0.27 -9.17 16 21 O -0.52 -6.18 11.90 -39.26 -0.47 -6.65 16 22 C -0.13 -2.71 4.99 -26.61 -0.13 -2.84 16 23 C 0.17 4.38 5.27 -3.71 -0.02 4.36 16 24 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.96 4.71 -51.92 -0.24 0.72 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.08 1.63 4.74 -52.04 -0.25 1.39 16 30 H 0.06 0.81 6.85 -51.93 -0.36 0.45 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.92 7.44 -51.93 -0.39 0.54 16 36 H 0.41 3.45 9.10 45.56 0.41 3.87 16 37 H 0.05 0.92 6.29 -51.93 -0.33 0.59 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 2.56 6.04 -51.93 -0.31 2.25 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -32.55 303.69 -8.48 -41.03 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.22 Total: 3.23 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.07 Total: 0.96 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -1.00 Total: -51.07 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.74 Total: -15.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.55 -8.48 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038042696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds