Wall clock time and date at job start Mon Mar 30 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00122 * 2 1 4 4 H 1.48506 * 109.46810 * 239.99853 * 3 2 1 5 5 H 1.48503 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47153 * 119.99628 * 3 2 1 7 7 C 1.38815 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00072 * 191.25883 * 7 2 1 9 9 N 1.36934 * 119.99592 * 10.97553 * 7 2 1 10 10 C 1.46924 * 120.62690 * 210.32609 * 9 7 2 11 11 C 1.52770 * 109.00739 * 233.58866 * 10 9 7 12 12 C 1.53040 * 109.38161 * 305.58976 * 11 10 9 13 13 N 1.46895 * 109.44879 * 181.25595 * 12 11 10 14 14 C 1.47846 * 111.00344 * 193.58717 * 13 12 11 15 15 C 1.54909 * 104.79646 * 213.63518 * 14 13 12 16 16 C 1.55137 * 101.65550 * 37.06857 * 15 14 13 17 17 C 1.47449 * 111.00385 * 72.74168 * 13 12 11 18 18 H 1.09003 * 109.88588 * 242.66930 * 17 13 12 19 19 C 1.50695 * 109.88322 * 3.68911 * 17 13 12 20 20 O 1.20825 * 120.00026 * 63.34334 * 19 17 13 21 21 O 1.34232 * 120.00091 * 243.33520 * 19 17 13 22 22 C 1.53042 * 109.53887 * 61.24105 * 12 11 10 23 23 C 1.46921 * 120.63041 * 30.61166 * 9 7 2 24 24 H 0.97001 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.59156 * 353.41908 * 10 9 7 26 26 H 1.08996 * 109.58861 * 113.84959 * 10 9 7 27 27 H 1.09008 * 109.56050 * 185.55749 * 11 10 9 28 28 H 1.08992 * 109.36168 * 65.50235 * 11 10 9 29 29 H 1.09005 * 109.45954 * 301.21982 * 12 11 10 30 30 H 1.09004 * 110.36945 * 332.46572 * 14 13 12 31 31 H 1.08997 * 110.37362 * 94.80030 * 14 13 12 32 32 H 1.09001 * 110.99115 * 278.97230 * 15 14 13 33 33 H 1.09004 * 111.02287 * 155.17411 * 15 14 13 34 34 H 1.08993 * 110.70631 * 205.96605 * 16 15 14 35 35 H 1.09001 * 110.70750 * 82.72576 * 16 15 14 36 36 H 0.96705 * 117.00099 * 180.02562 * 21 19 17 37 37 H 1.08995 * 109.49520 * 178.68389 * 22 12 11 38 38 H 1.08999 * 109.49495 * 58.58519 * 22 12 11 39 39 H 1.09004 * 109.58480 * 246.14633 * 23 9 7 40 40 H 1.08993 * 109.58721 * 6.43683 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0747 -1.2111 0.1832 9 7 1.3443 -2.3773 -0.2247 10 6 1.8115 -3.6307 0.3830 11 6 1.9928 -4.6782 -0.7141 12 6 0.6920 -4.8113 -1.5093 13 7 0.8551 -5.8397 -2.5454 14 6 -0.2440 -5.7768 -3.5322 15 6 -0.4758 -7.2473 -3.9606 16 6 -0.2497 -8.0023 -2.6244 17 6 0.8764 -7.1893 -1.9519 18 1 1.8398 -7.6627 -2.1416 19 6 0.6328 -7.1002 -0.4674 20 8 -0.4198 -6.6764 -0.0523 21 8 1.5851 -7.4919 0.3937 22 6 0.3560 -3.4718 -2.1688 23 6 0.1528 -2.4097 -1.0837 24 1 -0.4850 0.8401 -0.0004 25 1 2.7640 -3.4608 0.8849 26 1 1.0743 -3.9844 1.1037 27 1 2.2439 -5.6387 -0.2638 28 1 2.7968 -4.3674 -1.3812 29 1 -0.1168 -5.0982 -0.8371 30 1 -1.1441 -5.3691 -3.0721 31 1 0.0509 -5.1733 -4.3907 32 1 0.2526 -7.5548 -4.7110 33 1 -1.4930 -7.3930 -4.3242 34 1 0.0729 -9.0267 -2.8104 35 1 -1.1533 -7.9863 -2.0150 36 1 1.3827 -7.4163 1.3363 37 1 -0.5580 -3.5736 -2.7539 38 1 1.1754 -3.1724 -2.8222 39 1 -0.7225 -2.6618 -0.4850 40 1 0.0098 -1.4336 -1.5471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038042696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:43 Heat of formation + Delta-G solvation = -73.729359 kcal Electronic energy + Delta-G solvation = -22219.707400 eV Core-core repulsion = 19034.380664 eV Total energy + Delta-G solvation = -3185.326736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38211 -39.69682 -38.38497 -37.09563 -35.09359 -32.98749 -32.01545 -30.51798 -30.19801 -26.71497 -24.93528 -24.15130 -23.54384 -21.77205 -21.17981 -20.78487 -19.26736 -18.84980 -17.78222 -17.31599 -17.00228 -16.53145 -16.07274 -15.55165 -15.38113 -14.88049 -14.79726 -14.37181 -14.25426 -14.06870 -13.51967 -13.41373 -13.04519 -12.99522 -12.79343 -12.59116 -12.50951 -12.37384 -12.05131 -12.03734 -11.96186 -11.86403 -11.80498 -11.50994 -11.27388 -11.07410 -10.57841 -9.39853 -8.70467 -7.89335 -5.40814 1.04656 1.45526 1.48559 1.55436 2.05868 2.49095 2.81725 3.27443 3.46979 3.59936 3.67827 3.94956 3.97389 4.12653 4.31018 4.34709 4.41538 4.45254 4.52345 4.62940 4.71792 4.81802 4.82374 4.86890 4.92310 5.00236 5.02608 5.07538 5.15555 5.28831 5.31335 5.45739 5.57331 5.61109 5.66737 5.87184 5.93845 6.37296 6.91314 7.11501 7.80130 8.34747 9.17203 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005573 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.967843 B = 5022.728623 C = 5487.563817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.051 4.051 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.147 3.853 11 C -0.119 4.119 12 C 0.056 3.944 13 N -0.500 5.500 14 C 0.029 3.971 15 C -0.113 4.113 16 C -0.126 4.126 17 C 0.073 3.927 18 H 0.134 0.866 19 C 0.471 3.529 20 O -0.542 6.542 21 O -0.508 6.508 22 C -0.117 4.117 23 C 0.182 3.818 24 H 0.251 0.749 25 H 0.059 0.941 26 H 0.000 1.000 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.422 0.578 37 H 0.065 0.935 38 H 0.055 0.945 39 H -0.016 1.016 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -18.318 -6.896 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.021 3.979 11 C -0.158 4.158 12 C -0.052 4.052 13 N -0.225 5.225 14 C -0.098 4.098 15 C -0.151 4.151 16 C -0.164 4.164 17 C -0.036 4.036 18 H 0.151 0.849 19 C 0.314 3.686 20 O -0.433 6.433 21 O -0.321 6.321 22 C -0.157 4.157 23 C 0.056 3.944 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.018 0.982 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.284 0.716 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.002 0.998 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.725 -18.011 -7.404 19.549 hybrid contribution -0.850 1.331 1.559 2.219 sum 0.875 -16.680 -5.846 17.696 Atomic orbital electron populations 1.70160 1.06855 1.26001 1.55560 1.25973 0.96205 1.01779 1.00656 0.85233 0.77444 0.78620 0.78471 1.20111 1.21867 1.19944 1.19528 0.91412 0.85107 1.43652 0.91441 1.44259 1.31304 1.03916 1.53784 1.20884 0.96993 0.86596 0.93459 1.22016 0.96842 0.99182 0.97768 1.22316 0.97952 0.91811 0.93121 1.64357 1.44474 1.00584 1.13131 1.23275 0.91878 0.99331 0.95318 1.22708 1.03944 0.91852 0.96585 1.22866 0.96227 1.00645 0.96681 1.22714 1.04157 0.92826 0.83875 0.84862 1.24255 0.80451 0.72238 0.91632 1.90657 1.29001 1.42936 1.80677 1.84532 1.45904 1.78207 1.23445 1.22101 1.00569 0.94674 0.98334 1.20540 0.86939 0.97047 0.89872 0.94005 0.92231 0.98191 0.90081 0.91965 0.92294 0.94589 0.88983 0.88251 0.88694 0.86584 0.91859 0.71635 0.91661 0.92582 0.99813 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 11.01 21.65 0.24 -57.48 16 2 C -0.05 -2.95 5.05 84.86 0.43 -2.53 16 3 Si 0.98 45.96 29.57 68.60 2.03 47.99 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.27 -15.35 9.59 84.03 0.81 -14.55 16 8 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 9 N -0.61 -32.86 3.00 -699.92 -2.10 -34.96 16 10 C 0.15 6.66 6.49 86.22 0.56 7.21 16 11 C -0.12 -4.45 5.14 30.53 0.16 -4.29 16 12 C 0.06 2.06 1.37 44.94 0.06 2.12 16 13 N -0.50 -14.30 5.03 -839.68 -4.22 -18.52 16 14 C 0.03 0.72 5.28 86.77 0.46 1.17 16 15 C -0.11 -1.83 7.08 31.98 0.23 -1.60 16 16 C -0.13 -2.22 6.43 31.77 0.20 -2.01 16 17 C 0.07 1.70 3.64 44.51 0.16 1.86 16 18 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 19 C 0.47 12.86 4.42 71.23 0.31 13.18 16 20 O -0.54 -19.00 14.60 21.97 0.32 -18.68 16 21 O -0.51 -11.03 11.90 -51.43 -0.61 -11.65 16 22 C -0.12 -4.89 4.99 30.67 0.15 -4.74 16 23 C 0.18 9.59 5.27 86.37 0.46 10.05 16 24 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 26 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.08 2.61 4.71 -2.38 -0.01 2.60 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.49 4.74 -4.25 -0.02 2.47 16 30 H 0.04 1.02 6.85 -2.39 -0.02 1.01 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.35 7.44 -2.39 -0.02 1.33 16 36 H 0.42 6.40 9.10 -74.05 -0.67 5.72 16 37 H 0.06 2.47 6.29 -2.39 -0.02 2.45 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 40 H 0.06 3.58 6.04 -2.39 -0.01 3.56 16 Total: -1.00 -72.32 303.69 0.01 -72.31 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.36 Total: 15.11 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 3.99 Total: 5.88 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -6.08 Total: -110.96 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.29 Total: -30.33 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.32 0.01 -72.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038042696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.421 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds