Wall clock time and date at job start Mon Mar 30 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47442 * 2 1 4 4 C 1.38526 * 119.99958 * 179.97438 * 3 2 1 5 5 N 1.32428 * 119.15864 * 0.02562 * 4 3 2 6 6 C 1.32552 * 120.94736 * 179.97438 * 5 4 3 7 7 C 1.38247 * 119.26248 * 0.02562 * 6 5 4 8 8 F 1.35095 * 120.77319 * 179.97438 * 7 6 5 9 9 C 1.39796 * 118.45201 * 359.97438 * 7 6 5 10 10 N 1.38658 * 120.49355 * 180.02562 * 9 7 6 11 11 C 1.46897 * 111.00569 * 239.04356 * 10 9 7 12 12 C 1.52992 * 109.47352 * 75.57362 * 11 10 9 13 13 C 1.46904 * 110.99888 * 115.08361 * 10 9 7 14 14 C 1.50700 * 109.47395 * 190.00094 * 13 10 9 15 15 H 1.08006 * 119.99929 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00039 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99833 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99835 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47378 * 60.00329 * 18 16 14 20 20 H 1.48501 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47387 * 299.99908 * 18 16 14 22 22 N 1.32449 * 119.15267 * 180.25260 * 4 3 2 23 23 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46917 * 300.00154 * 1 2 3 25 25 H 1.08999 * 109.46866 * 59.99805 * 1 2 3 26 26 H 1.09005 * 109.47261 * 239.99835 * 2 1 3 27 27 H 1.08999 * 109.46866 * 120.00195 * 2 1 3 28 28 H 0.96998 * 119.99712 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.37125 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47339 * 195.57676 * 11 10 9 31 31 H 1.09004 * 109.46811 * 315.57613 * 11 10 9 32 32 H 1.09003 * 109.47057 * 64.87104 * 12 11 10 33 33 H 1.08997 * 109.47483 * 184.87614 * 12 11 10 34 34 H 1.09007 * 109.47036 * 304.87705 * 12 11 10 35 35 H 1.08990 * 109.47270 * 310.00547 * 13 10 9 36 36 H 1.09006 * 109.46358 * 70.00462 * 13 10 9 37 37 H 0.97005 * 119.99862 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3803 1.6342 0.0005 5 7 4.2259 0.6151 0.0005 6 6 5.5361 0.8164 0.0005 7 6 6.0208 2.1111 0.0011 8 9 7.3502 2.3514 0.0016 9 6 5.1033 3.1658 0.0011 10 7 5.5429 4.4808 0.0011 11 6 5.0408 5.2039 1.1771 12 6 5.8334 4.7780 2.4144 13 6 5.1584 5.1644 -1.2411 14 6 5.8546 6.4989 -1.3164 15 1 6.5168 6.8081 -0.5212 16 6 5.6461 7.3250 -2.4003 17 7 4.8393 6.9487 -3.3683 18 14 6.5096 8.9788 -2.4940 19 1 7.9800 8.7710 -2.4788 20 1 6.1208 9.6699 -3.7495 21 1 6.1151 9.8100 -1.3283 22 7 3.8034 2.8893 0.0056 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3881 2.1184 0.0004 29 1 6.2173 -0.0217 0.0009 30 1 5.1583 6.2763 1.0217 31 1 3.9860 4.9714 1.3235 32 1 6.8726 5.0881 2.3047 33 1 5.4054 5.2481 3.2997 34 1 5.7870 3.6940 2.5203 35 1 5.4487 4.5544 -2.0964 36 1 4.0790 5.3166 -1.2528 37 1 4.6929 7.5298 -4.1311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131459310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:10 Heat of formation + Delta-G solvation = -0.060751 kcal Electronic energy + Delta-G solvation = -20655.418851 eV Core-core repulsion = 17382.119072 eV Total energy + Delta-G solvation = -3273.299779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.68159 -42.09136 -39.05690 -37.11432 -34.98693 -34.15343 -32.57344 -31.59407 -29.86217 -28.65538 -25.72590 -24.54839 -24.36141 -23.44299 -21.95488 -19.64512 -18.76292 -18.51225 -18.25167 -17.39697 -16.74905 -16.52695 -16.08375 -15.99755 -15.73408 -15.32484 -14.98336 -14.86422 -14.35537 -14.16913 -13.97790 -13.24914 -12.97094 -12.92463 -12.85766 -12.80378 -12.61822 -12.56223 -12.46849 -12.15301 -11.93581 -11.71353 -11.48115 -10.90880 -10.67340 -10.31264 -9.57968 -9.00678 -8.25227 -6.37039 -0.16884 -0.00751 1.41840 1.45980 1.53736 1.78917 2.36369 2.61380 2.64931 3.07718 3.10301 3.21968 3.75323 3.90420 4.10582 4.14312 4.26391 4.31454 4.40869 4.55991 4.62044 4.82894 4.92378 4.94048 5.03226 5.07661 5.12619 5.19856 5.26758 5.31169 5.59420 5.67576 5.91659 5.96814 5.98506 6.28922 6.48413 6.75543 7.17530 7.32410 8.86582 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.005389 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.930708 B = 5194.991308 C = 5810.455259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 N -0.695 5.695 4 C 0.551 3.449 5 N -0.553 5.553 6 C 0.184 3.816 7 C -0.063 4.063 8 F -0.124 7.124 9 C 0.359 3.641 10 N -0.493 5.493 11 C 0.059 3.941 12 C -0.129 4.129 13 C 0.229 3.771 14 C -0.528 4.528 15 H 0.071 0.929 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.263 1.263 22 N -0.599 5.599 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.415 0.585 29 H 0.223 0.777 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.037 0.963 35 H -0.009 1.009 36 H -0.022 1.022 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -13.548 9.498 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 N -0.333 5.333 4 C 0.193 3.807 5 N -0.276 5.276 6 C 0.016 3.984 7 C -0.092 4.092 8 F -0.102 7.102 9 C 0.119 3.881 10 N -0.217 5.217 11 C -0.067 4.067 12 C -0.187 4.187 13 C 0.104 3.896 14 C -0.566 4.566 15 H 0.089 0.911 16 C -0.193 4.193 17 N -0.574 5.574 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.187 1.187 22 N -0.326 5.326 23 H 0.114 0.886 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.253 0.747 29 H 0.240 0.760 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.009 0.991 36 H -0.005 1.005 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.377 -13.866 9.366 17.576 hybrid contribution 0.299 1.506 -0.682 1.680 sum -5.078 -12.360 8.684 15.936 Atomic orbital electron populations 1.21983 0.92263 1.04462 1.02809 1.21426 0.95511 0.79978 1.02143 1.44439 0.99848 1.10289 1.78757 1.19597 0.88498 0.83876 0.88759 1.68059 1.02825 1.33553 1.23143 1.23585 0.91507 0.94718 0.88606 1.19035 0.79323 0.95085 1.15736 1.91469 1.28941 1.95191 1.94649 1.20535 0.86310 0.92999 0.88214 1.60413 1.57214 0.98241 1.05822 1.22107 0.96685 0.99090 0.88826 1.21670 1.00801 1.00182 0.96056 1.19270 0.93241 0.93005 0.84066 1.21345 1.27487 1.01293 1.06493 0.91066 1.25956 0.95828 1.02812 0.94735 1.70104 1.37894 1.39221 1.10162 0.85333 0.78902 0.78058 0.77724 1.19203 1.20818 1.18727 1.68115 1.17878 1.22904 1.23702 0.88582 0.91543 0.92086 0.92038 0.91342 0.74709 0.76032 0.90124 0.94676 0.91967 0.89892 0.94340 0.99132 1.00466 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.03 71.98 0.72 -1.27 16 2 C 0.13 2.50 6.37 86.38 0.55 3.05 16 3 N -0.69 -18.34 5.71 -351.03 -2.00 -20.35 16 4 C 0.55 18.71 8.43 261.47 2.20 20.91 16 5 N -0.55 -16.85 9.58 -198.06 -1.90 -18.74 16 6 C 0.18 5.26 11.28 84.59 0.95 6.21 16 7 C -0.06 -2.30 7.38 22.65 0.17 -2.13 16 8 F -0.12 -4.66 17.15 44.97 0.77 -3.89 16 9 C 0.36 15.35 4.58 133.19 0.61 15.95 16 10 N -0.49 -23.25 4.31 -705.43 -3.04 -26.29 16 11 C 0.06 2.45 5.49 86.30 0.47 2.93 16 12 C -0.13 -4.23 10.07 71.98 0.72 -3.51 16 13 C 0.23 12.92 4.55 85.56 0.39 13.31 16 14 C -0.53 -30.45 8.23 25.60 0.21 -30.24 16 15 H 0.07 3.96 7.31 -2.91 -0.02 3.94 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 18 Si 0.98 44.35 29.54 68.60 2.03 46.37 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 N -0.60 -24.42 9.61 -195.31 -1.88 -26.29 16 23 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.42 10.43 8.59 -92.71 -0.80 9.63 16 29 H 0.22 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.08 3.54 6.58 -2.39 -0.02 3.53 16 31 H 0.03 1.46 7.43 -2.38 -0.02 1.45 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.04 1.25 7.60 -2.38 -0.02 1.23 16 35 H -0.01 -0.59 8.05 -2.39 -0.02 -0.61 16 36 H -0.02 -1.39 8.12 -2.38 -0.02 -1.41 16 37 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -70.23 319.40 2.02 -68.22 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.28 Total: 11.87 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.47 Total: 25.98 kcal Atomic # 7 Polarization: -140.03 SS G_CDS: -8.53 Total: -148.56 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -70.23 2.02 -68.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131459310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.155 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds