Wall clock time and date at job start Mon Mar 30 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 113.38042 * 2 1 4 4 C 1.42899 * 113.99957 * 46.92341 * 3 2 1 5 5 C 1.50699 * 109.47191 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00086 * 355.02600 * 5 4 3 7 7 N 1.34777 * 120.00099 * 175.01782 * 5 4 3 8 8 C 1.46497 * 120.00018 * 185.05504 * 7 5 4 9 9 C 1.50707 * 109.47071 * 90.00421 * 8 7 5 10 10 H 1.08002 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99998 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00200 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99697 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47170 * 90.00129 * 13 11 9 15 15 H 1.48506 * 109.47102 * 210.00069 * 13 11 9 16 16 H 1.48500 * 109.46968 * 329.99622 * 13 11 9 17 17 C 1.46501 * 119.99855 * 5.06284 * 7 5 4 18 18 C 1.52999 * 117.49535 * 193.58782 * 17 7 5 19 19 C 1.52997 * 59.99969 * 252.51173 * 18 17 7 20 20 C 1.53514 * 114.17027 * 226.92496 * 2 1 3 21 21 N 1.47478 * 87.93039 * 220.32789 * 20 2 1 22 22 C 1.47474 * 87.83810 * 27.00701 * 21 20 2 23 23 H 1.08999 * 109.47349 * 193.07924 * 1 2 3 24 24 H 1.09007 * 109.47122 * 313.07326 * 1 2 3 25 25 H 1.09002 * 109.47601 * 73.07630 * 1 2 3 26 26 H 1.08996 * 109.47580 * 300.00044 * 4 3 2 27 27 H 1.08998 * 109.47137 * 59.99878 * 4 3 2 28 28 H 1.08993 * 109.47716 * 210.00234 * 8 7 5 29 29 H 1.09003 * 109.47498 * 330.00947 * 8 7 5 30 30 H 0.96996 * 120.00137 * 180.02562 * 12 11 9 31 31 H 1.08996 * 115.54778 * 339.29581 * 17 7 5 32 32 H 1.09005 * 117.50012 * 0.02562 * 18 17 7 33 33 H 1.09001 * 117.49947 * 145.01931 * 18 17 7 34 34 H 1.09001 * 117.49543 * 252.51467 * 19 18 17 35 35 H 1.08993 * 117.52115 * 107.48655 * 19 18 17 36 36 H 1.08998 * 113.47400 * 105.55945 * 20 2 1 37 37 H 1.09000 * 113.52598 * 335.10200 * 20 2 1 38 38 H 1.00901 * 110.99810 * 138.70641 * 21 20 2 39 39 H 1.09001 * 113.47296 * 87.75903 * 22 21 20 40 40 H 1.08998 * 113.48235 * 218.22178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0971 1.3117 0.0000 4 6 1.5093 2.1990 0.9536 5 6 2.1805 3.5455 0.8671 6 8 3.1329 3.7024 0.1327 7 7 1.7223 4.5755 1.6058 8 6 2.3024 5.9106 1.4404 9 6 1.5403 6.6615 0.3791 10 1 0.7075 6.1911 -0.1224 11 6 1.9070 7.9486 0.0476 12 7 2.9221 8.5209 0.6572 13 14 0.9619 8.8796 -1.2675 14 1 -0.1573 9.6257 -0.6382 15 1 1.8723 9.8348 -1.9488 16 1 0.4194 7.9185 -2.2611 17 6 0.6443 4.3600 2.5741 18 6 -0.0485 5.5980 3.1470 19 6 0.9019 4.7792 4.0228 20 6 2.1585 -0.9565 -1.0231 21 7 3.1618 -1.3059 -0.0001 22 6 2.1586 -0.9566 1.0229 23 1 -0.3634 -1.0010 0.2326 24 1 -0.3634 0.7019 0.7507 25 1 -0.3634 0.2991 -0.9831 26 1 0.4459 2.3084 0.7409 27 1 1.6393 1.7924 1.9565 28 1 2.2411 6.4528 2.3839 29 1 3.3466 5.8186 1.1414 30 1 3.1798 9.4265 0.4242 31 1 0.0336 3.4727 2.4079 32 1 0.2974 6.5728 2.8031 33 1 -1.1155 5.5254 3.3577 34 1 0.4602 4.1678 4.8097 35 1 1.8735 5.2149 4.2556 36 1 2.5810 -0.4485 -1.8900 37 1 1.5097 -1.7885 -1.2968 38 1 3.3481 -2.2975 -0.0002 39 1 1.5092 -1.7883 1.2958 40 1 2.5811 -0.4487 1.8899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161131554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:45 Heat of formation + Delta-G solvation = -3.632878 kcal Electronic energy + Delta-G solvation = -21094.808983 eV Core-core repulsion = 17912.521858 eV Total energy + Delta-G solvation = -3182.287124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43665 -39.11743 -36.91706 -35.92893 -33.19949 -31.99988 -30.47079 -28.89420 -26.59262 -25.99150 -24.45748 -22.84515 -21.99767 -21.65386 -19.72370 -18.33215 -17.22253 -16.53958 -16.42930 -16.35168 -15.57962 -15.37973 -14.66374 -14.33765 -14.19438 -13.83798 -13.60569 -13.37477 -12.92581 -12.72944 -12.32572 -12.13236 -11.95773 -11.67944 -11.40605 -11.32516 -11.01439 -10.84485 -10.63429 -10.53149 -10.46066 -10.15885 -10.08689 -9.52753 -9.47086 -9.12441 -8.81773 -8.42658 -7.52226 -6.03153 -4.07867 3.13974 3.30964 3.33124 3.38402 3.43459 3.93970 4.05206 4.29949 4.37803 4.48049 4.54540 4.97328 5.00515 5.07622 5.12620 5.24753 5.29317 5.31140 5.31893 5.36583 5.42948 5.49013 5.53330 5.62839 5.68293 5.89101 5.95453 5.98490 6.10028 6.43190 6.76664 6.97845 7.05014 7.26784 7.45246 7.54614 7.93401 8.23519 8.38747 8.91177 9.08733 9.56956 11.04725 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.004956 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.757663 B = 5648.760918 C = 6215.478604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 O -0.318 6.318 4 C 0.042 3.958 5 C 0.512 3.488 6 O -0.516 6.516 7 N -0.570 5.570 8 C 0.245 3.755 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.070 3.930 18 C -0.175 4.175 19 C -0.201 4.201 20 C 0.014 3.986 21 N -0.614 5.614 22 C -0.024 4.024 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.316 0.684 39 H 0.071 0.929 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -17.749 4.431 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 O -0.235 6.235 4 C -0.038 4.038 5 C 0.298 3.702 6 O -0.391 6.391 7 N -0.302 5.302 8 C 0.127 3.873 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.036 4.036 18 C -0.213 4.213 19 C -0.240 4.240 20 C -0.116 4.116 21 N -0.237 5.237 22 C -0.155 4.155 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.956 -16.813 3.881 18.604 hybrid contribution -1.507 -0.234 -0.416 1.581 sum -8.463 -17.046 3.465 19.344 Atomic orbital electron populations 1.22265 0.94351 1.02877 1.03655 1.22535 0.92002 0.84465 0.96834 1.88152 1.59175 1.18746 1.57426 1.22394 0.97600 0.90376 0.93433 1.19801 0.84549 0.84684 0.81197 1.90713 1.26903 1.83353 1.38114 1.47686 1.34987 1.10668 1.36892 1.19317 0.95263 0.75650 0.97114 1.21405 1.15467 0.98474 1.20872 0.92389 1.24923 0.95149 0.97471 0.96504 1.69929 1.26752 1.14448 1.42182 0.86505 0.79543 0.79576 0.81866 1.20642 1.21110 1.19890 1.21516 0.93703 0.99360 0.89009 1.23364 0.97472 0.98117 1.02316 1.23385 1.01947 1.04853 0.93791 1.23734 0.93621 0.96701 0.97529 1.67392 1.30018 1.22628 1.03709 1.24307 0.94510 0.98770 0.97892 0.91230 0.91292 0.90951 0.90623 0.90986 0.94637 0.93645 0.92702 0.86790 0.86127 0.88989 0.88983 0.88552 0.88572 0.90457 0.87146 0.91074 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.02 37.16 0.34 -1.25 16 2 C 0.08 1.01 1.47 -90.09 -0.13 0.88 16 3 O -0.32 -5.58 9.89 -55.09 -0.54 -6.13 16 4 C 0.04 0.68 4.25 36.01 0.15 0.83 16 5 C 0.51 11.37 7.74 -10.99 -0.08 11.29 16 6 O -0.52 -14.13 16.06 -14.31 -0.23 -14.36 16 7 N -0.57 -12.36 2.81 -167.47 -0.47 -12.83 16 8 C 0.25 6.45 4.47 -5.19 -0.02 6.42 16 9 C -0.52 -14.77 8.91 -34.44 -0.31 -15.08 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.07 1.16 6.16 -67.93 -0.42 0.74 16 18 C -0.17 -2.81 9.72 -26.73 -0.26 -3.07 16 19 C -0.20 -2.94 10.02 -26.73 -0.27 -3.21 16 20 C 0.01 0.16 8.05 -7.55 -0.06 0.10 16 21 N -0.61 -7.28 8.71 -122.66 -1.07 -8.35 16 22 C -0.02 -0.25 8.04 -7.55 -0.06 -0.31 16 23 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 24 H 0.07 0.61 6.13 -51.93 -0.32 0.29 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.04 5.77 -51.93 -0.30 0.74 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.93 6.25 -51.93 -0.32 0.61 16 29 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.11 1.47 6.59 -51.93 -0.34 1.13 16 32 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.57 7.83 -51.93 -0.41 1.17 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.32 2.81 8.91 -39.29 -0.35 2.46 16 39 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -35.04 328.95 -8.94 -43.98 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.07 Total: 2.66 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.22 Total: -1.01 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.80 Total: -47.01 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.77 Total: -20.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.04 -8.94 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161131554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.348 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds