Wall clock time and date at job start Mon Mar 30 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 113.38042 * 2 1 4 4 C 1.42899 * 113.99957 * 46.92341 * 3 2 1 5 5 C 1.50699 * 109.47191 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00086 * 355.02600 * 5 4 3 7 7 N 1.34777 * 120.00099 * 175.01782 * 5 4 3 8 8 C 1.46497 * 120.00018 * 185.05504 * 7 5 4 9 9 C 1.50707 * 109.47071 * 90.00421 * 8 7 5 10 10 H 1.08002 * 119.99482 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99998 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00200 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99697 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47170 * 90.00129 * 13 11 9 15 15 H 1.48506 * 109.47102 * 210.00069 * 13 11 9 16 16 H 1.48500 * 109.46968 * 329.99622 * 13 11 9 17 17 C 1.46501 * 119.99855 * 5.06284 * 7 5 4 18 18 C 1.52999 * 117.49535 * 193.58782 * 17 7 5 19 19 C 1.52997 * 59.99969 * 252.51173 * 18 17 7 20 20 C 1.53514 * 114.17027 * 226.92496 * 2 1 3 21 21 N 1.47478 * 87.93039 * 220.32789 * 20 2 1 22 22 C 1.47474 * 87.83810 * 27.00701 * 21 20 2 23 23 H 1.08999 * 109.47349 * 193.07924 * 1 2 3 24 24 H 1.09007 * 109.47122 * 313.07326 * 1 2 3 25 25 H 1.09002 * 109.47601 * 73.07630 * 1 2 3 26 26 H 1.08996 * 109.47580 * 300.00044 * 4 3 2 27 27 H 1.08998 * 109.47137 * 59.99878 * 4 3 2 28 28 H 1.08993 * 109.47716 * 210.00234 * 8 7 5 29 29 H 1.09003 * 109.47498 * 330.00947 * 8 7 5 30 30 H 0.96996 * 120.00137 * 180.02562 * 12 11 9 31 31 H 1.08996 * 115.54778 * 339.29581 * 17 7 5 32 32 H 1.09005 * 117.50012 * 0.02562 * 18 17 7 33 33 H 1.09001 * 117.49947 * 145.01931 * 18 17 7 34 34 H 1.09001 * 117.49543 * 252.51467 * 19 18 17 35 35 H 1.08993 * 117.52115 * 107.48655 * 19 18 17 36 36 H 1.08998 * 113.47400 * 105.55945 * 20 2 1 37 37 H 1.09000 * 113.52598 * 335.10200 * 20 2 1 38 38 H 1.00901 * 110.99810 * 138.70641 * 21 20 2 39 39 H 1.09001 * 113.47296 * 87.75903 * 22 21 20 40 40 H 1.08998 * 113.48235 * 218.22178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0971 1.3117 0.0000 4 6 1.5093 2.1990 0.9536 5 6 2.1805 3.5455 0.8671 6 8 3.1329 3.7024 0.1327 7 7 1.7223 4.5755 1.6058 8 6 2.3024 5.9106 1.4404 9 6 1.5403 6.6615 0.3791 10 1 0.7075 6.1911 -0.1224 11 6 1.9070 7.9486 0.0476 12 7 2.9221 8.5209 0.6572 13 14 0.9619 8.8796 -1.2675 14 1 -0.1573 9.6257 -0.6382 15 1 1.8723 9.8348 -1.9488 16 1 0.4194 7.9185 -2.2611 17 6 0.6443 4.3600 2.5741 18 6 -0.0485 5.5980 3.1470 19 6 0.9019 4.7792 4.0228 20 6 2.1585 -0.9565 -1.0231 21 7 3.1618 -1.3059 -0.0001 22 6 2.1586 -0.9566 1.0229 23 1 -0.3634 -1.0010 0.2326 24 1 -0.3634 0.7019 0.7507 25 1 -0.3634 0.2991 -0.9831 26 1 0.4459 2.3084 0.7409 27 1 1.6393 1.7924 1.9565 28 1 2.2411 6.4528 2.3839 29 1 3.3466 5.8186 1.1414 30 1 3.1798 9.4265 0.4242 31 1 0.0336 3.4727 2.4079 32 1 0.2974 6.5728 2.8031 33 1 -1.1155 5.5254 3.3577 34 1 0.4602 4.1678 4.8097 35 1 1.8735 5.2149 4.2556 36 1 2.5810 -0.4485 -1.8900 37 1 1.5097 -1.7885 -1.2968 38 1 3.3481 -2.2975 -0.0002 39 1 1.5092 -1.7883 1.2958 40 1 2.5811 -0.4487 1.8899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161131554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:45 Heat of formation + Delta-G solvation = -31.025329 kcal Electronic energy + Delta-G solvation = -21095.996808 eV Core-core repulsion = 17912.521858 eV Total energy + Delta-G solvation = -3183.474950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43579 -40.65884 -38.36043 -37.19250 -35.22956 -33.82822 -31.28258 -30.59581 -28.26370 -26.84813 -25.47374 -24.69786 -23.34406 -23.03997 -20.68091 -19.92005 -18.66057 -18.48966 -17.55932 -17.42397 -17.00429 -16.86127 -16.37472 -15.57889 -15.53534 -15.10714 -14.91168 -14.72985 -14.26733 -13.90111 -13.48858 -13.39875 -13.35951 -12.97165 -12.84950 -12.72026 -12.60915 -12.37747 -12.27650 -12.21776 -12.13162 -11.50292 -11.39760 -11.34441 -10.65036 -10.55749 -10.50193 -9.89804 -9.27572 -8.22709 -6.37519 1.35093 1.38891 1.48624 1.64603 1.87160 2.37124 2.75324 3.06458 3.10049 3.23556 3.36436 3.70267 3.80953 3.93176 3.99183 4.13596 4.19428 4.26824 4.30727 4.35958 4.49662 4.66435 4.77115 4.81981 4.85864 4.88174 4.91901 5.01717 5.12739 5.16917 5.24638 5.26661 5.44324 5.53079 5.79186 6.03947 6.19429 6.40328 6.68001 6.73843 7.25870 7.41484 8.84359 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.004956 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.757663 B = 5648.760918 C = 6215.478604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.065 3.935 3 O -0.365 6.365 4 C 0.061 3.939 5 C 0.497 3.503 6 O -0.588 6.588 7 N -0.575 5.575 8 C 0.263 3.737 9 C -0.534 4.534 10 H 0.053 0.947 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.260 1.260 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.052 3.948 18 C -0.181 4.181 19 C -0.180 4.180 20 C 0.016 3.984 21 N -0.650 5.650 22 C -0.014 4.014 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.028 0.972 29 H -0.010 1.010 30 H 0.267 0.733 31 H 0.164 0.836 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.331 0.669 39 H 0.112 0.888 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 -20.005 5.348 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 O -0.284 6.284 4 C -0.018 4.018 5 C 0.285 3.715 6 O -0.468 6.468 7 N -0.306 5.306 8 C 0.142 3.858 9 C -0.573 4.573 10 H 0.072 0.928 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.052 4.052 18 C -0.219 4.219 19 C -0.219 4.219 20 C -0.114 4.114 21 N -0.276 5.276 22 C -0.144 4.144 23 H 0.120 0.880 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.046 0.954 29 H 0.008 0.992 30 H 0.076 0.924 31 H 0.181 0.819 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.488 -19.097 4.846 22.320 hybrid contribution -0.359 0.422 -0.666 0.866 sum -10.847 -18.675 4.180 21.997 Atomic orbital electron populations 1.22267 0.91544 1.05089 1.03664 1.22927 0.94071 0.82307 0.98177 1.88094 1.60918 1.21292 1.58088 1.22255 0.97834 0.86687 0.95065 1.21042 0.83820 0.86882 0.79710 1.90664 1.30136 1.84860 1.41104 1.47668 1.36037 1.08888 1.37999 1.18707 0.92543 0.78376 0.96159 1.21606 1.15403 0.98983 1.21301 0.92824 1.25856 0.96050 0.98476 0.98746 1.70057 1.28238 1.14926 1.43703 0.85414 0.78549 0.78078 0.78776 1.18477 1.20812 1.19816 1.22133 0.92926 1.01355 0.88778 1.23330 0.99814 0.95740 1.02973 1.23441 1.00551 1.04050 0.93820 1.23824 0.93867 0.97505 0.96174 1.67331 1.31408 1.24169 1.04684 1.24315 0.94304 0.99272 0.96492 0.87996 0.90616 0.91515 0.87412 0.87674 0.95400 0.99162 0.92430 0.81921 0.90805 0.85072 0.84147 0.91278 0.91496 0.86458 0.85498 0.87055 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.02 71.98 0.65 -1.72 16 2 C 0.07 1.44 1.47 -10.45 -0.02 1.43 16 3 O -0.37 -12.69 9.89 -129.99 -1.29 -13.98 16 4 C 0.06 1.87 4.25 71.24 0.30 2.17 16 5 C 0.50 22.66 7.74 87.66 0.68 23.34 16 6 O -0.59 -34.38 16.06 15.94 0.26 -34.13 16 7 N -0.58 -25.51 2.81 -802.14 -2.25 -27.76 16 8 C 0.26 14.72 4.47 85.64 0.38 15.10 16 9 C -0.53 -31.39 8.91 25.60 0.23 -31.16 16 10 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 11 C 0.01 0.44 5.46 84.66 0.46 0.91 16 12 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 13 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 17 C 0.05 1.59 6.16 44.99 0.28 1.87 16 18 C -0.18 -5.51 9.72 30.59 0.30 -5.21 16 19 C -0.18 -4.84 10.02 30.59 0.31 -4.53 16 20 C 0.02 0.33 8.05 83.57 0.67 1.00 16 21 N -0.65 -14.51 8.71 -542.37 -4.73 -19.23 16 22 C -0.01 -0.25 8.04 83.57 0.67 0.43 16 23 H 0.10 0.78 7.90 -2.39 -0.02 0.76 16 24 H 0.07 0.96 6.13 -2.38 -0.01 0.94 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.11 2.59 5.77 -2.39 -0.01 2.57 16 27 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.03 1.58 6.25 -2.39 -0.01 1.56 16 29 H -0.01 -0.64 7.36 -2.39 -0.02 -0.66 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.16 3.38 6.59 -2.39 -0.02 3.37 16 32 H 0.07 3.00 6.29 -2.38 -0.02 2.98 16 33 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.33 5.25 8.91 -89.69 -0.80 4.45 16 39 H 0.11 1.11 7.93 -2.39 -0.02 1.09 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -85.02 328.95 -0.54 -85.56 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.24 Total: 15.35 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.91 Total: 3.61 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -6.69 Total: -104.16 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.03 Total: -48.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -85.02 -0.54 -85.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161131554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.536 kcal (2) G-P(sol) polarization free energy of solvation -85.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds