Wall clock time and date at job start Mon Mar 30 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47368 * 274.98256 * 3 2 1 5 5 H 1.48496 * 109.46953 * 34.98555 * 3 2 1 6 6 H 1.48504 * 109.46735 * 154.98346 * 3 2 1 7 7 C 1.40053 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 186.15109 * 7 2 1 9 9 C 1.46371 * 120.00183 * 6.14636 * 7 2 1 10 10 O 1.21692 * 119.99961 * 353.94827 * 9 7 2 11 11 N 1.34772 * 120.00101 * 173.94064 * 9 7 2 12 12 C 1.46499 * 120.00166 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46898 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.46630 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00071 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00204 * 179.97438 * 16 15 14 19 19 C 1.54888 * 110.48839 * 63.24237 * 18 16 15 20 20 C 1.55234 * 102.59391 * 156.67582 * 19 18 16 21 21 C 1.54272 * 104.22854 * 322.08403 * 20 19 18 22 22 C 1.53876 * 106.59948 * 23.60781 * 21 20 19 23 23 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00214 * 359.97438 * 11 9 7 25 25 H 1.08999 * 109.47713 * 59.99655 * 12 11 9 26 26 H 1.09005 * 109.46949 * 299.99858 * 12 11 9 27 27 H 1.09002 * 109.46707 * 59.99696 * 13 12 11 28 28 H 1.08995 * 109.47007 * 299.99850 * 13 12 11 29 29 H 1.08994 * 109.47033 * 60.00515 * 14 13 12 30 30 H 1.08995 * 109.47526 * 299.99970 * 14 13 12 31 31 H 0.97001 * 120.00041 * 0.02562 * 15 14 13 32 32 H 1.09000 * 110.43467 * 300.69610 * 18 16 15 33 33 H 1.09006 * 110.75479 * 275.06950 * 19 18 16 34 34 H 1.09003 * 110.75708 * 38.43113 * 19 18 16 35 35 H 1.08997 * 110.47120 * 203.39854 * 20 19 18 36 36 H 1.08994 * 110.58274 * 80.82859 * 20 19 18 37 37 H 1.08998 * 110.02990 * 264.32372 * 21 20 19 38 38 H 1.08995 * 110.07040 * 142.91469 * 21 20 19 39 39 H 1.09002 * 110.03294 * 240.71564 * 22 21 20 40 40 H 1.09001 * 110.02896 * 119.28240 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0822 -1.2157 0.0997 9 6 1.2814 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2602 12 6 1.2348 -4.8990 -0.3972 13 6 2.2348 -6.0505 -0.5201 14 6 1.4763 -7.3716 -0.6625 15 7 2.4339 -8.4742 -0.7796 16 6 1.9910 -9.7398 -0.9162 17 8 0.7997 -9.9659 -0.9417 18 6 2.9760 -10.8739 -1.0372 19 6 3.8234 -10.9960 0.2535 20 6 4.2892 -12.4763 0.2138 21 6 3.0706 -13.2425 -0.3411 22 6 2.2356 -12.2237 -1.1364 23 1 -0.4850 0.8400 -0.0004 24 1 2.9310 -3.6294 -0.2590 25 1 0.6097 -4.8645 -1.2894 26 1 0.6072 -5.0545 0.4804 27 1 2.8603 -6.0853 0.3720 28 1 2.8621 -5.8948 -1.3978 29 1 0.8507 -7.3370 -1.5543 30 1 0.8494 -7.5271 0.2154 31 1 3.3867 -8.2934 -0.7587 32 1 3.6202 -10.7275 -1.9042 33 1 4.6769 -10.3188 0.2208 34 1 3.2124 -10.8066 1.1362 35 1 4.5351 -12.8256 1.2166 36 1 5.1462 -12.5906 -0.4499 37 1 2.4802 -13.6495 0.4798 38 1 3.4019 -14.0472 -0.9973 39 1 1.2399 -12.1363 -0.7016 40 1 2.1624 -12.5336 -2.1789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219775377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:14 Heat of formation + Delta-G solvation = -107.991749 kcal Electronic energy + Delta-G solvation = -19541.667128 eV Core-core repulsion = 16354.854664 eV Total energy + Delta-G solvation = -3186.812464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23538 -37.66037 -37.27321 -35.62917 -33.60588 -32.38450 -30.85776 -29.31665 -28.95673 -26.60228 -24.64735 -22.12319 -21.57596 -20.79873 -19.74008 -19.65697 -17.63990 -17.02197 -16.31929 -15.90699 -15.64144 -15.30774 -14.93804 -14.58440 -14.08246 -13.90184 -13.71381 -13.56069 -12.96025 -12.36667 -12.22387 -11.94800 -11.77296 -11.60366 -11.48790 -11.44630 -11.21971 -11.14249 -11.09116 -11.07635 -10.73909 -10.62026 -10.44914 -10.22426 -9.85049 -9.15753 -8.85341 -7.62421 -7.52375 -6.19866 -4.64269 2.52360 3.04310 3.13504 3.20561 3.24094 4.09970 4.13524 4.22415 4.41851 4.58301 4.68381 4.84558 4.99961 5.08357 5.10912 5.14978 5.21719 5.29984 5.33640 5.38850 5.46152 5.59129 5.72501 5.73342 5.76591 5.81775 5.89497 5.95936 6.01055 6.05519 6.34003 6.52556 6.54482 7.37342 7.43205 7.91815 8.07580 8.11550 8.32177 9.02032 9.52350 10.59511 10.77909 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.055351 B = 0.002489 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.744279 B =11247.396097 C =11615.903931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.136 3.864 13 C -0.139 4.139 14 C 0.120 3.880 15 N -0.728 5.728 16 C 0.516 3.484 17 O -0.540 6.540 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.113 4.113 23 H 0.268 0.732 24 H 0.380 0.620 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 -21.898 -1.213 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.010 3.990 13 C -0.177 4.177 14 C -0.004 4.004 15 N -0.379 5.379 16 C 0.302 3.698 17 O -0.417 6.417 18 C -0.136 4.136 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.151 4.151 23 H 0.079 0.921 24 H 0.211 0.789 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.234 0.766 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.691 -21.953 -1.227 24.028 hybrid contribution 1.419 0.951 -0.067 1.709 sum 11.110 -21.002 -1.294 23.794 Atomic orbital electron populations 1.70028 1.07099 1.27285 1.35223 1.25720 0.94607 1.00338 0.92637 0.86353 0.80193 0.81491 0.78663 1.19811 1.20455 1.18910 1.20879 0.94068 0.89593 1.53840 0.91398 1.18239 0.87168 0.82417 0.76442 1.90605 1.14122 1.86433 1.55210 1.46123 1.08521 1.05762 1.82046 1.20718 0.93747 0.83630 1.00900 1.21981 0.99355 0.93729 1.02664 1.21322 0.91712 0.84649 1.02677 1.46057 1.10514 1.06609 1.74769 1.20570 0.89684 0.83756 0.75765 1.90702 1.17164 1.84081 1.49728 1.22187 0.96858 0.94158 1.00421 1.22562 0.98894 0.97364 0.96444 1.22407 0.97915 0.94518 1.01262 1.22156 0.96496 0.98002 0.99660 1.22076 1.00158 0.91918 1.00914 0.92090 0.78905 0.93116 0.93111 0.91086 0.91078 0.91124 0.91138 0.76622 0.88195 0.90766 0.90841 0.91375 0.91357 0.91669 0.91725 0.89771 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.22 11.85 55.55 0.66 -22.56 16 2 C 0.09 2.43 5.49 -17.37 -0.10 2.34 16 3 Si 0.91 20.10 29.56 -169.99 -5.03 15.08 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.45 9.53 -35.63 -0.34 -15.79 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.85 7.74 -12.99 -0.10 15.75 16 10 O -0.58 -19.09 15.05 5.20 0.08 -19.02 16 11 N -0.77 -16.91 5.55 -61.72 -0.34 -17.25 16 12 C 0.14 2.52 5.67 -4.04 -0.02 2.50 16 13 C -0.14 -1.75 5.44 -26.73 -0.15 -1.90 16 14 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 15 N -0.73 -7.40 5.52 -60.30 -0.33 -7.73 16 16 C 0.52 6.00 7.14 -10.99 -0.08 5.93 16 17 O -0.54 -8.62 15.44 5.55 0.09 -8.54 16 18 C -0.11 -0.93 3.24 -90.11 -0.29 -1.22 16 19 C -0.11 -0.76 6.32 -24.55 -0.16 -0.91 16 20 C -0.12 -0.71 6.84 -24.88 -0.17 -0.88 16 21 C -0.13 -0.83 6.80 -25.61 -0.17 -1.00 16 22 C -0.11 -0.96 6.17 -25.61 -0.16 -1.12 16 23 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 24 H 0.38 7.15 8.45 -40.82 -0.35 6.80 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.40 2.90 8.47 -40.82 -0.35 2.55 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.91 6.88 -51.93 -0.36 0.56 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -36.60 334.21 -8.11 -44.71 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.51 Total: 5.12 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.76 Total: 5.14 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.02 Total: -47.54 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.16 Total: -27.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.60 -8.11 -44.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219775377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.282 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds