Wall clock time and date at job start Mon Mar 30 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47368 * 274.98256 * 3 2 1 5 5 H 1.48496 * 109.46953 * 34.98555 * 3 2 1 6 6 H 1.48504 * 109.46735 * 154.98346 * 3 2 1 7 7 C 1.40053 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 186.15109 * 7 2 1 9 9 C 1.46371 * 120.00183 * 6.14636 * 7 2 1 10 10 O 1.21692 * 119.99961 * 353.94827 * 9 7 2 11 11 N 1.34772 * 120.00101 * 173.94064 * 9 7 2 12 12 C 1.46499 * 120.00166 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47320 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46898 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.46630 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00071 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00204 * 179.97438 * 16 15 14 19 19 C 1.54888 * 110.48839 * 63.24237 * 18 16 15 20 20 C 1.55234 * 102.59391 * 156.67582 * 19 18 16 21 21 C 1.54272 * 104.22854 * 322.08403 * 20 19 18 22 22 C 1.53876 * 106.59948 * 23.60781 * 21 20 19 23 23 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00214 * 359.97438 * 11 9 7 25 25 H 1.08999 * 109.47713 * 59.99655 * 12 11 9 26 26 H 1.09005 * 109.46949 * 299.99858 * 12 11 9 27 27 H 1.09002 * 109.46707 * 59.99696 * 13 12 11 28 28 H 1.08995 * 109.47007 * 299.99850 * 13 12 11 29 29 H 1.08994 * 109.47033 * 60.00515 * 14 13 12 30 30 H 1.08995 * 109.47526 * 299.99970 * 14 13 12 31 31 H 0.97001 * 120.00041 * 0.02562 * 15 14 13 32 32 H 1.09000 * 110.43467 * 300.69610 * 18 16 15 33 33 H 1.09006 * 110.75479 * 275.06950 * 19 18 16 34 34 H 1.09003 * 110.75708 * 38.43113 * 19 18 16 35 35 H 1.08997 * 110.47120 * 203.39854 * 20 19 18 36 36 H 1.08994 * 110.58274 * 80.82859 * 20 19 18 37 37 H 1.08998 * 110.02990 * 264.32372 * 21 20 19 38 38 H 1.08995 * 110.07040 * 142.91469 * 21 20 19 39 39 H 1.09002 * 110.03294 * 240.71564 * 22 21 20 40 40 H 1.09001 * 110.02896 * 119.28240 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0822 -1.2157 0.0997 9 6 1.2814 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2602 12 6 1.2348 -4.8990 -0.3972 13 6 2.2348 -6.0505 -0.5201 14 6 1.4763 -7.3716 -0.6625 15 7 2.4339 -8.4742 -0.7796 16 6 1.9910 -9.7398 -0.9162 17 8 0.7997 -9.9659 -0.9417 18 6 2.9760 -10.8739 -1.0372 19 6 3.8234 -10.9960 0.2535 20 6 4.2892 -12.4763 0.2138 21 6 3.0706 -13.2425 -0.3411 22 6 2.2356 -12.2237 -1.1364 23 1 -0.4850 0.8400 -0.0004 24 1 2.9310 -3.6294 -0.2590 25 1 0.6097 -4.8645 -1.2894 26 1 0.6072 -5.0545 0.4804 27 1 2.8603 -6.0853 0.3720 28 1 2.8621 -5.8948 -1.3978 29 1 0.8507 -7.3370 -1.5543 30 1 0.8494 -7.5271 0.2154 31 1 3.3867 -8.2934 -0.7587 32 1 3.6202 -10.7275 -1.9042 33 1 4.6769 -10.3188 0.2208 34 1 3.2124 -10.8066 1.1362 35 1 4.5351 -12.8256 1.2166 36 1 5.1462 -12.5906 -0.4499 37 1 2.4802 -13.6495 0.4798 38 1 3.4019 -14.0472 -0.9973 39 1 1.2399 -12.1363 -0.7016 40 1 2.1624 -12.5336 -2.1789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219775377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:13 Heat of formation + Delta-G solvation = -136.004632 kcal Electronic energy + Delta-G solvation = -19542.881858 eV Core-core repulsion = 16354.854664 eV Total energy + Delta-G solvation = -3188.027194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12237 -39.47240 -38.17053 -36.92387 -35.22578 -34.48733 -32.23522 -30.16441 -29.53369 -28.51778 -26.08752 -23.10868 -22.69461 -21.72103 -21.32530 -20.54602 -19.18242 -18.31257 -17.41784 -17.21524 -16.97062 -16.49636 -16.08677 -15.87413 -15.73291 -15.23991 -14.74644 -14.31702 -14.28816 -14.19483 -13.49858 -13.31381 -12.96108 -12.85169 -12.77382 -12.57837 -12.53125 -12.16022 -12.05474 -11.99938 -11.99260 -11.95391 -11.68102 -11.29435 -10.93448 -10.82107 -10.14537 -9.88870 -9.50158 -8.30274 -6.85463 1.41318 1.42636 1.58903 1.61206 2.11761 2.26646 2.46907 3.13282 3.51748 3.60534 3.64005 3.82017 3.99722 4.04298 4.10126 4.27875 4.48703 4.53997 4.56306 4.59517 4.61216 4.62800 4.79556 4.81099 4.98006 5.11034 5.12837 5.14062 5.22884 5.29415 5.32706 5.34609 5.44835 5.49362 5.87701 6.23973 6.26692 6.55090 6.86666 7.24809 7.56193 8.48861 8.67110 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.055351 B = 0.002489 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.744279 B =11247.396097 C =11615.903931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.534 3.466 10 O -0.637 6.637 11 N -0.753 5.753 12 C 0.134 3.866 13 C -0.114 4.114 14 C 0.126 3.874 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.591 6.591 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.274 0.726 24 H 0.399 0.601 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.419 0.581 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.582 -21.929 -1.384 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.609 4.609 8 H 0.110 0.890 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.408 5.408 12 C 0.009 3.991 13 C -0.152 4.152 14 C 0.002 3.998 15 N -0.365 5.365 16 C 0.299 3.701 17 O -0.472 6.472 18 C -0.129 4.129 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.155 4.155 23 H 0.084 0.916 24 H 0.233 0.767 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.256 0.744 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.693 -22.031 -1.398 25.977 hybrid contribution 0.159 0.878 -0.015 0.892 sum 13.853 -21.153 -1.413 25.325 Atomic orbital electron populations 1.70206 1.09715 1.28993 1.36486 1.27056 0.95519 1.05230 0.91197 0.84957 0.78953 0.74903 0.79143 1.18808 1.19960 1.16811 1.21449 0.95353 0.90111 1.53986 0.89000 1.18698 0.86790 0.84517 0.76221 1.90560 1.16500 1.87661 1.57725 1.45737 1.09454 1.05376 1.80266 1.20806 0.94928 0.84321 0.99065 1.21734 0.97808 0.90824 1.04817 1.21062 0.91996 0.85447 1.01345 1.45866 1.11122 1.05617 1.73909 1.21289 0.89623 0.84685 0.74492 1.90687 1.19607 1.84836 1.52056 1.22251 0.96226 0.92007 1.02431 1.22594 0.99044 0.98686 0.94677 1.22416 0.97774 0.93459 1.02009 1.22156 0.96630 0.97920 0.99477 1.22088 0.99077 0.93129 1.01238 0.91582 0.76669 0.95151 0.95110 0.88787 0.88790 0.92655 0.92717 0.74398 0.85545 0.88364 0.92447 0.90729 0.89680 0.92298 0.90432 0.92942 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.08 11.85 21.84 0.26 -50.82 16 2 C 0.02 1.39 5.49 85.31 0.47 1.85 16 3 Si 1.00 40.62 29.56 68.60 2.03 42.65 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 7 C -0.57 -32.23 9.53 24.83 0.24 -32.00 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.53 31.15 7.74 86.36 0.67 31.82 16 10 O -0.64 -43.65 15.05 -4.32 -0.07 -43.72 16 11 N -0.75 -32.94 5.55 -467.40 -2.59 -35.53 16 12 C 0.13 5.05 5.67 86.38 0.49 5.54 16 13 C -0.11 -2.66 5.44 30.60 0.17 -2.49 16 14 C 0.13 3.09 5.67 86.38 0.49 3.58 16 15 N -0.71 -13.29 5.52 -463.06 -2.56 -15.84 16 16 C 0.51 11.58 7.14 87.66 0.63 12.21 16 17 O -0.59 -19.60 15.44 -3.05 -0.05 -19.64 16 18 C -0.11 -1.55 3.24 -10.46 -0.03 -1.59 16 19 C -0.11 -1.18 6.32 32.01 0.20 -0.98 16 20 C -0.12 -1.04 6.84 31.79 0.22 -0.82 16 21 C -0.12 -1.45 6.80 31.32 0.21 -1.24 16 22 C -0.12 -1.94 6.17 31.32 0.19 -1.75 16 23 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 24 H 0.40 14.26 8.45 -92.70 -0.78 13.47 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.42 4.65 8.47 -92.71 -0.79 3.86 16 32 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.80 8.05 -2.39 -0.02 0.79 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 1.21 6.88 -2.39 -0.02 1.19 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -84.34 334.21 0.43 -83.90 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.53 Total: 24.89 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 3.94 Total: 14.13 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.89 Total: -102.20 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.11 Total: -63.36 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -84.34 0.43 -83.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219775377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.102 kcal (2) G-P(sol) polarization free energy of solvation -84.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds