Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.84922 * 2 1 4 4 C 1.53771 * 113.61625 * 131.20061 * 2 1 3 5 5 C 1.53777 * 87.08220 * 89.11358 * 4 2 1 6 6 C 1.53006 * 113.61489 * 139.98351 * 5 4 2 7 7 C 1.50698 * 109.47184 * 176.53353 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46663 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00123 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99689 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99896 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.38953 * 120.00005 * 179.97438 * 14 13 11 17 17 N 1.31414 * 119.99824 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00050 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47212 * 89.99662 * 18 16 14 20 20 H 1.48497 * 109.47277 * 209.99843 * 18 16 14 21 21 H 1.48504 * 109.47139 * 330.00009 * 18 16 14 22 22 C 1.53779 * 87.17120 * 25.39196 * 5 4 2 23 23 H 1.09003 * 109.46962 * 288.80266 * 1 2 3 24 24 H 1.09004 * 109.47046 * 48.79720 * 1 2 3 25 25 H 1.08991 * 109.47184 * 168.80010 * 1 2 3 26 26 H 1.09000 * 109.46978 * 191.19381 * 3 2 1 27 27 H 1.09001 * 109.47256 * 311.20216 * 3 2 1 28 28 H 1.09007 * 109.46902 * 71.19904 * 3 2 1 29 29 H 1.09006 * 113.61359 * 334.56361 * 4 2 1 30 30 H 1.09000 * 113.61519 * 203.66516 * 4 2 1 31 31 H 1.09006 * 113.61610 * 270.79903 * 5 4 2 32 32 H 1.09001 * 109.47002 * 296.52757 * 6 5 4 33 33 H 1.08993 * 109.46955 * 56.53194 * 6 5 4 34 34 H 0.96998 * 119.99962 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47135 * 299.99021 * 10 9 7 36 36 H 1.08993 * 109.47378 * 60.00104 * 10 9 7 37 37 H 0.97002 * 120.00016 * 359.97438 * 13 11 10 38 38 H 0.96999 * 119.99732 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.61559 * 89.15873 * 22 5 4 40 40 H 1.09002 * 113.60988 * 220.05739 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0929 -2.0425 0.0018 6 6 3.3264 -2.9478 0.0026 7 6 3.1398 -4.0519 -1.0060 8 8 2.1205 -4.1093 -1.6606 9 7 4.1053 -4.9761 -1.1798 10 6 3.9236 -6.0497 -2.1599 11 6 5.1381 -6.9420 -2.1583 12 8 6.0644 -6.7043 -1.4122 13 7 5.1949 -8.0043 -2.9858 14 6 6.2999 -8.8157 -2.9847 15 1 7.1247 -8.6041 -2.3204 16 6 6.3582 -9.9112 -3.8376 17 7 7.4172 -10.6893 -3.8361 18 14 4.9314 -10.2778 -4.9860 19 1 5.1421 -9.5752 -6.2772 20 1 4.8523 -11.7412 -5.2259 21 1 3.6653 -9.8084 -4.3680 22 6 2.1448 -0.9316 -1.0603 23 1 -0.3633 0.3312 0.9729 24 1 -0.3633 0.6770 -0.7732 25 1 -0.3633 -1.0080 -0.1996 26 1 3.1942 1.3533 -0.1995 27 1 1.6414 2.0077 -0.7732 28 1 1.9600 1.8734 0.9729 29 1 1.4945 -1.1068 1.9155 30 1 3.1591 -0.6486 1.3494 31 1 1.1574 -2.6019 0.0033 32 1 4.2074 -2.3617 -0.2592 33 1 3.4590 -3.3802 0.9943 34 1 4.9204 -4.9303 -0.6559 35 1 3.0426 -6.6355 -1.8979 36 1 3.7911 -5.6177 -3.1517 37 1 4.4539 -8.1946 -3.5822 38 1 7.4581 -11.4538 -4.4318 39 1 3.1575 -0.6531 -1.3518 40 1 1.4923 -1.1133 -1.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354411254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = -71.402730 kcal Electronic energy + Delta-G solvation = -19944.179228 eV Core-core repulsion = 16758.953383 eV Total energy + Delta-G solvation = -3185.225845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33426 -39.17910 -38.16411 -34.51363 -33.72642 -32.44137 -31.80896 -28.99871 -27.66087 -27.02135 -25.85447 -24.28366 -21.37948 -19.99220 -19.58183 -18.64118 -18.43923 -17.06451 -15.96921 -15.67042 -15.38371 -15.18210 -14.79656 -14.48946 -14.42095 -14.12760 -13.67101 -13.30212 -13.07068 -12.90301 -12.53670 -12.46427 -12.22392 -12.13218 -12.01502 -11.87237 -11.57068 -11.24631 -10.93234 -10.70983 -10.65502 -10.21001 -10.14136 -10.07741 -9.71205 -9.66495 -8.86147 -8.78465 -8.31840 -6.42093 -3.94692 2.81507 2.98575 3.03227 3.11203 3.33581 3.55164 4.02392 4.27984 4.41702 4.48511 4.54394 4.63010 4.93144 5.07971 5.12763 5.16247 5.35387 5.38593 5.42761 5.53310 5.57296 5.61176 5.67416 5.70262 5.73936 5.75281 5.79368 5.81244 5.82772 6.01688 6.03203 6.29197 6.42849 6.60181 7.42899 7.77251 7.99183 8.39032 8.46781 8.80344 9.28528 9.62187 10.70088 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.002971 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.240335 B = 9421.871251 C = 9752.659310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.129 4.129 5 C -0.091 4.091 6 C -0.131 4.131 7 C 0.511 3.489 8 O -0.550 6.550 9 N -0.711 5.711 10 C 0.106 3.894 11 C 0.438 3.562 12 O -0.579 6.579 13 N -0.577 5.577 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.880 3.120 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C -0.124 4.124 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.412 0.588 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 19.060 6.520 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.192 4.192 4 C -0.166 4.166 5 C -0.110 4.110 6 C -0.171 4.171 7 C 0.298 3.702 8 O -0.428 6.428 9 N -0.365 5.365 10 C -0.022 4.022 11 C 0.224 3.776 12 O -0.464 6.464 13 N -0.214 5.214 14 C -0.439 4.439 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.161 4.161 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.249 0.751 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.242 18.949 6.450 23.463 hybrid contribution -0.534 -0.604 -0.796 1.133 sum -12.775 18.345 5.654 23.059 Atomic orbital electron populations 1.21595 0.93319 1.02145 1.01510 1.21800 0.95537 0.94328 0.97517 1.21726 1.00480 0.95568 1.01426 1.23136 1.01102 0.95855 0.96536 1.22262 0.98102 0.93841 0.96783 1.21676 1.00278 0.95954 0.99173 1.20676 0.82989 0.82608 0.83964 1.90667 1.28353 1.75465 1.48289 1.45777 1.21757 1.27507 1.41501 1.20956 0.97933 0.89578 0.93733 1.19667 0.89057 0.84005 0.84894 1.90535 1.39298 1.73407 1.43131 1.42133 1.18642 1.25001 1.35649 1.19443 0.96390 1.05484 1.22576 0.86088 1.25071 0.97262 0.95917 0.97675 1.69619 1.27807 1.16020 1.37867 0.86665 0.81960 0.79208 0.81625 1.19386 1.19966 1.19238 1.23143 1.00965 0.95189 0.96834 0.92604 0.92552 0.92157 0.92576 0.92787 0.92765 0.91497 0.89998 0.88310 0.88842 0.88745 0.75056 0.89860 0.89846 0.79245 0.91374 0.90330 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.07 37.16 0.34 -0.68 16 2 C -0.09 -0.76 1.39 -153.61 -0.21 -0.97 16 3 C -0.13 -0.98 9.20 37.16 0.34 -0.64 16 4 C -0.13 -1.05 6.79 -25.93 -0.18 -1.22 16 5 C -0.09 -0.92 2.76 -89.81 -0.25 -1.17 16 6 C -0.13 -1.37 5.52 -27.88 -0.15 -1.52 16 7 C 0.51 7.45 7.83 -10.99 -0.09 7.37 16 8 O -0.55 -9.62 15.79 5.56 0.09 -9.54 16 9 N -0.71 -11.15 5.53 -61.47 -0.34 -11.49 16 10 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 11 C 0.44 9.64 7.85 -10.98 -0.09 9.55 16 12 O -0.58 -14.62 15.24 5.55 0.08 -14.53 16 13 N -0.58 -13.45 5.09 -10.96 -0.06 -13.50 16 14 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 15 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 16 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 17 N -0.87 -24.96 13.96 55.50 0.77 -24.19 16 18 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 22 C -0.12 -1.23 6.76 -25.83 -0.17 -1.40 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 26 H 0.06 0.40 7.96 -51.93 -0.41 -0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.08 0.60 8.06 -51.93 -0.42 0.19 16 31 H 0.10 1.15 7.25 -51.93 -0.38 0.77 16 32 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.41 6.33 7.44 -40.82 -0.30 6.03 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.08 0.75 7.75 -51.93 -0.40 0.34 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -31.70 331.38 -6.21 -37.90 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.30 Total: 12.53 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.74 Total: 3.51 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.38 Total: -49.18 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.70 -6.21 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354411254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.501 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds