Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.84922 * 2 1 4 4 C 1.53771 * 113.61625 * 131.20061 * 2 1 3 5 5 C 1.53777 * 87.08220 * 89.11358 * 4 2 1 6 6 C 1.53006 * 113.61489 * 139.98351 * 5 4 2 7 7 C 1.50698 * 109.47184 * 176.53353 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46663 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00123 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99689 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99896 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.38953 * 120.00005 * 179.97438 * 14 13 11 17 17 N 1.31414 * 119.99824 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00050 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47212 * 89.99662 * 18 16 14 20 20 H 1.48497 * 109.47277 * 209.99843 * 18 16 14 21 21 H 1.48504 * 109.47139 * 330.00009 * 18 16 14 22 22 C 1.53779 * 87.17120 * 25.39196 * 5 4 2 23 23 H 1.09003 * 109.46962 * 288.80266 * 1 2 3 24 24 H 1.09004 * 109.47046 * 48.79720 * 1 2 3 25 25 H 1.08991 * 109.47184 * 168.80010 * 1 2 3 26 26 H 1.09000 * 109.46978 * 191.19381 * 3 2 1 27 27 H 1.09001 * 109.47256 * 311.20216 * 3 2 1 28 28 H 1.09007 * 109.46902 * 71.19904 * 3 2 1 29 29 H 1.09006 * 113.61359 * 334.56361 * 4 2 1 30 30 H 1.09000 * 113.61519 * 203.66516 * 4 2 1 31 31 H 1.09006 * 113.61610 * 270.79903 * 5 4 2 32 32 H 1.09001 * 109.47002 * 296.52757 * 6 5 4 33 33 H 1.08993 * 109.46955 * 56.53194 * 6 5 4 34 34 H 0.96998 * 119.99962 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47135 * 299.99021 * 10 9 7 36 36 H 1.08993 * 109.47378 * 60.00104 * 10 9 7 37 37 H 0.97002 * 120.00016 * 359.97438 * 13 11 10 38 38 H 0.96999 * 119.99732 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.61559 * 89.15873 * 22 5 4 40 40 H 1.09002 * 113.60988 * 220.05739 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0929 -2.0425 0.0018 6 6 3.3264 -2.9478 0.0026 7 6 3.1398 -4.0519 -1.0060 8 8 2.1205 -4.1093 -1.6606 9 7 4.1053 -4.9761 -1.1798 10 6 3.9236 -6.0497 -2.1599 11 6 5.1381 -6.9420 -2.1583 12 8 6.0644 -6.7043 -1.4122 13 7 5.1949 -8.0043 -2.9858 14 6 6.2999 -8.8157 -2.9847 15 1 7.1247 -8.6041 -2.3204 16 6 6.3582 -9.9112 -3.8376 17 7 7.4172 -10.6893 -3.8361 18 14 4.9314 -10.2778 -4.9860 19 1 5.1421 -9.5752 -6.2772 20 1 4.8523 -11.7412 -5.2259 21 1 3.6653 -9.8084 -4.3680 22 6 2.1448 -0.9316 -1.0603 23 1 -0.3633 0.3312 0.9729 24 1 -0.3633 0.6770 -0.7732 25 1 -0.3633 -1.0080 -0.1996 26 1 3.1942 1.3533 -0.1995 27 1 1.6414 2.0077 -0.7732 28 1 1.9600 1.8734 0.9729 29 1 1.4945 -1.1068 1.9155 30 1 3.1591 -0.6486 1.3494 31 1 1.1574 -2.6019 0.0033 32 1 4.2074 -2.3617 -0.2592 33 1 3.4590 -3.3802 0.9943 34 1 4.9204 -4.9303 -0.6559 35 1 3.0426 -6.6355 -1.8979 36 1 3.7911 -5.6177 -3.1517 37 1 4.4539 -8.1946 -3.5822 38 1 7.4581 -11.4538 -4.4318 39 1 3.1575 -0.6531 -1.3518 40 1 1.4923 -1.1133 -1.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354411254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = -93.781338 kcal Electronic energy + Delta-G solvation = -19945.149637 eV Core-core repulsion = 16758.953383 eV Total energy + Delta-G solvation = -3186.196255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31331 -40.51706 -39.61410 -36.29499 -35.27233 -33.85408 -33.22391 -30.14842 -28.34605 -28.19571 -26.55441 -26.08756 -22.35867 -21.48119 -21.03616 -20.43277 -19.17964 -18.39111 -17.41048 -16.94968 -16.88643 -16.58386 -16.13287 -15.66365 -15.32525 -15.10384 -14.96411 -14.66181 -14.31831 -14.14577 -13.97015 -13.64362 -13.54696 -13.08673 -12.96021 -12.76633 -12.64038 -12.46233 -12.23594 -12.01672 -11.67178 -11.59667 -11.41081 -10.99977 -10.84912 -10.75464 -10.64956 -10.34801 -10.13958 -8.46999 -6.09028 1.29806 1.32726 1.42658 1.66008 1.79048 2.08356 2.19301 2.88565 3.09178 3.58502 3.68877 3.78535 3.83382 3.97186 4.10528 4.32159 4.39176 4.42077 4.47497 4.62471 4.71707 4.82098 4.83409 4.92999 4.95930 5.04838 5.07102 5.08412 5.22849 5.28457 5.33326 5.38549 5.47778 5.62840 5.72282 5.86807 6.46842 6.56127 6.76821 7.20848 7.29910 7.76532 8.69461 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.002971 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.240335 B = 9421.871251 C = 9752.659310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.118 4.118 5 C -0.095 4.095 6 C -0.124 4.124 7 C 0.511 3.489 8 O -0.579 6.579 9 N -0.715 5.715 10 C 0.117 3.883 11 C 0.445 3.555 12 O -0.614 6.614 13 N -0.579 5.579 14 C -0.332 4.332 15 H 0.064 0.936 16 C -0.008 4.008 17 N -0.925 5.925 18 Si 0.959 3.041 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.234 1.234 22 C -0.129 4.129 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.413 0.587 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.392 0.608 38 H 0.281 0.719 39 H 0.083 0.917 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 20.453 6.423 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.190 4.190 4 C -0.155 4.155 5 C -0.114 4.114 6 C -0.164 4.164 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.369 5.369 10 C -0.011 4.011 11 C 0.232 3.768 12 O -0.500 6.500 13 N -0.219 5.219 14 C -0.461 4.461 15 H 0.082 0.918 16 C -0.208 4.208 17 N -0.565 5.565 18 Si 0.779 3.221 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.157 1.157 22 C -0.167 4.167 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.307 20.370 6.372 25.695 hybrid contribution 0.171 -0.978 -0.689 1.208 sum -14.136 19.393 5.682 24.662 Atomic orbital electron populations 1.21602 0.93273 1.01522 1.02229 1.21806 0.95635 0.94830 0.96698 1.21713 1.00531 0.94772 1.02010 1.23105 1.02002 0.94329 0.96099 1.22233 0.97071 0.94039 0.98039 1.21754 1.01169 0.94702 0.98756 1.21381 0.81940 0.82681 0.83983 1.90658 1.29471 1.76193 1.49629 1.45869 1.22267 1.27455 1.41325 1.20849 0.95459 0.89423 0.95357 1.20540 0.89740 0.83447 0.83049 1.90522 1.41170 1.74128 1.44188 1.41950 1.18121 1.25069 1.36729 1.19034 0.96786 1.07415 1.22860 0.91826 1.26071 1.00711 0.94847 0.99187 1.69780 1.30612 1.16865 1.39250 0.85438 0.78602 0.79085 0.78950 1.18080 1.19763 1.15715 1.23185 1.00978 0.96015 0.96514 0.91499 0.92330 0.93367 0.92316 0.92752 0.91836 0.90832 0.88663 0.90210 0.86933 0.86751 0.74853 0.88193 0.88126 0.77261 0.90893 0.89852 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.07 71.98 0.65 -1.22 16 2 C -0.09 -1.32 1.39 -51.60 -0.07 -1.39 16 3 C -0.13 -1.63 9.20 71.98 0.66 -0.96 16 4 C -0.12 -1.62 6.79 31.12 0.21 -1.41 16 5 C -0.09 -1.76 2.76 -10.27 -0.03 -1.79 16 6 C -0.12 -2.31 5.52 29.85 0.16 -2.15 16 7 C 0.51 14.03 7.83 87.66 0.69 14.71 16 8 O -0.58 -19.53 15.79 -3.04 -0.05 -19.58 16 9 N -0.71 -21.24 5.53 -466.78 -2.58 -23.82 16 10 C 0.12 3.84 6.15 85.63 0.53 4.36 16 11 C 0.44 19.38 7.85 87.66 0.69 20.07 16 12 O -0.61 -31.52 15.24 -3.05 -0.05 -31.57 16 13 N -0.58 -26.69 5.09 -306.98 -1.56 -28.25 16 14 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 15 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 16 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 17 N -0.93 -54.36 13.96 21.66 0.30 -54.05 16 18 Si 0.96 38.17 27.74 68.60 1.90 40.07 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 22 C -0.13 -2.41 6.76 31.18 0.21 -2.20 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.81 7.34 -2.39 -0.02 0.79 16 26 H 0.06 0.69 7.96 -2.39 -0.02 0.67 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.93 8.10 -2.38 -0.02 0.91 16 30 H 0.09 1.08 8.06 -2.39 -0.02 1.06 16 31 H 0.08 1.81 7.25 -2.38 -0.02 1.79 16 32 H 0.11 1.71 7.88 -2.39 -0.02 1.69 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 12.21 7.44 -92.71 -0.69 11.52 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 38 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.08 1.44 7.75 -2.39 -0.02 1.43 16 40 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -71.57 331.38 2.75 -68.82 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -0.24 Total: 38.33 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.02 Total: 10.05 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.84 Total: -106.13 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.07 kcal Total: -71.57 2.75 -68.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354411254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.961 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds