Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48498 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47224 * 299.99981 * 3 2 1 6 6 H 1.48494 * 109.47344 * 60.00002 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00251 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99785 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00401 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99790 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47101 * 179.97438 * 13 11 10 15 15 N 1.46501 * 109.47431 * 179.97438 * 14 13 11 16 16 C 1.34775 * 120.00606 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99487 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00203 * 180.02562 * 16 15 14 19 19 C 1.54894 * 110.48422 * 63.24037 * 18 16 15 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 16 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 0.96998 * 119.99809 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47247 * 59.99655 * 9 7 2 25 25 H 1.08996 * 109.47132 * 300.00261 * 9 7 2 26 26 H 0.96998 * 119.99717 * 359.97438 * 10 9 7 27 27 H 1.09005 * 109.47235 * 59.98948 * 13 11 10 28 28 H 1.08996 * 109.46733 * 299.99492 * 13 11 10 29 29 H 1.09005 * 109.47244 * 59.99800 * 14 13 11 30 30 H 1.08996 * 109.47602 * 299.99805 * 14 13 11 31 31 H 0.97005 * 119.99133 * 0.02562 * 15 14 13 32 32 H 1.09002 * 110.43350 * 300.69816 * 18 16 15 33 33 H 1.08996 * 110.75388 * 275.05970 * 19 18 16 34 34 H 1.08993 * 110.76071 * 38.44196 * 19 18 16 35 35 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 36 36 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 37 37 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 38 38 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 39 39 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 40 40 H 1.08995 * 110.03881 * 119.28625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 6 1.9679 -7.3538 0.0005 15 7 2.9198 -8.4674 0.0004 16 6 2.4706 -9.7381 -0.0002 17 8 1.2782 -9.9596 -0.0003 18 6 3.4499 -10.8835 0.0003 19 6 4.2976 -10.8712 1.2966 20 6 4.7560 -12.3497 1.4149 21 6 3.5333 -13.1646 0.9453 22 6 2.7028 -12.2325 0.0459 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1566 -3.4354 0.0002 27 1 3.3591 -5.9712 0.8910 28 1 3.3602 -5.9710 -0.8889 29 1 1.3416 -7.4117 -0.8898 30 1 1.3409 -7.4115 0.8902 31 1 3.8735 -8.2901 0.0008 32 1 4.0942 -10.8337 -0.8775 33 1 5.1545 -10.2058 1.1915 34 1 3.6883 -10.5859 2.1541 35 1 5.0011 -12.5912 2.4492 36 1 5.6121 -12.5385 0.7670 37 1 2.9415 -13.4788 1.8051 38 1 3.8601 -14.0365 0.3786 39 1 1.7079 -12.0942 0.4691 40 1 2.6272 -12.6514 -0.9574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701247778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = -107.475797 kcal Electronic energy + Delta-G solvation = -19596.503020 eV Core-core repulsion = 16409.712929 eV Total energy + Delta-G solvation = -3186.790091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23865 -38.92432 -37.39099 -35.19700 -34.20790 -32.38813 -31.22383 -29.31487 -28.94514 -27.23679 -24.23123 -22.40105 -21.75465 -20.79869 -20.06710 -19.49352 -17.67901 -17.04620 -16.30763 -15.98146 -15.70363 -15.27773 -15.13902 -14.82541 -14.38426 -14.15774 -13.73498 -13.66861 -13.16629 -12.73599 -12.21743 -12.00552 -11.89357 -11.82127 -11.60857 -11.47323 -11.43993 -11.29174 -11.12228 -10.97163 -10.92290 -10.72538 -10.34771 -9.87202 -9.41286 -9.13319 -9.12765 -8.77245 -7.93374 -6.19272 -4.26533 2.55733 3.00338 3.21463 3.28578 3.29098 3.31439 4.08764 4.15311 4.24365 4.35857 4.44473 4.77012 4.94334 5.01097 5.12802 5.14520 5.17252 5.17987 5.22917 5.31647 5.34782 5.46616 5.59990 5.65488 5.74346 5.82790 5.95502 5.97295 6.07054 6.09219 6.36697 7.26720 7.38002 7.39164 7.48545 7.62646 7.93984 8.14596 8.56735 8.73976 9.04102 9.40142 10.90963 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.055555 B = 0.002549 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.885384 B =10984.028099 C =11353.728453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.711 5.711 11 C 0.500 3.500 12 O -0.553 6.553 13 C -0.154 4.154 14 C 0.134 3.866 15 N -0.731 5.731 16 C 0.516 3.484 17 O -0.536 6.536 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.113 4.113 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.391 0.609 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.398 0.602 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.781 -22.058 1.138 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.360 5.360 11 C 0.284 3.716 12 O -0.432 6.432 13 C -0.194 4.194 14 C 0.010 3.990 15 N -0.382 5.382 16 C 0.302 3.698 17 O -0.412 6.412 18 C -0.136 4.136 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.151 4.151 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.223 0.777 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.232 0.768 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.853 -22.206 1.136 25.197 hybrid contribution 1.398 1.274 -0.067 1.893 sum 13.251 -20.932 1.068 24.796 Atomic orbital electron populations 1.69985 1.06117 1.27244 1.48841 1.24969 0.94931 0.99515 0.94696 0.86349 0.79776 0.82929 0.77779 1.19651 1.20785 1.20777 1.21253 0.93273 0.90426 1.53246 0.91841 1.19132 0.88334 0.81959 0.97844 1.46462 1.11168 1.06113 1.72230 1.20170 0.89244 0.84318 0.77841 1.90703 1.16854 1.84861 1.50768 1.21821 0.99309 0.93877 1.04424 1.21065 0.90973 0.82828 1.04093 1.46052 1.10368 1.05952 1.75865 1.20547 0.89674 0.83799 0.75767 1.90718 1.17002 1.84555 1.48955 1.22185 0.96874 0.94034 1.00473 1.22563 0.98884 0.97480 0.96340 1.22409 0.97904 0.94348 1.01437 1.22154 0.96485 0.98198 0.99473 1.22075 1.00180 0.92378 1.00475 0.92455 0.95470 0.95451 0.77653 0.88792 0.88797 0.90524 0.90522 0.76788 0.88190 0.90781 0.90814 0.91392 0.91373 0.91664 0.91737 0.89735 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.51 5.43 -5.20 -0.03 6.48 16 10 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 11 C 0.50 9.55 7.83 -10.98 -0.09 9.46 16 12 O -0.55 -13.18 15.98 5.56 0.09 -13.09 16 13 C -0.15 -1.90 5.81 -27.88 -0.16 -2.07 16 14 C 0.13 1.83 4.96 -4.04 -0.02 1.81 16 15 N -0.73 -7.52 5.52 -60.30 -0.33 -7.85 16 16 C 0.52 6.17 7.14 -10.99 -0.08 6.09 16 17 O -0.54 -8.94 15.44 5.56 0.09 -8.85 16 18 C -0.11 -0.93 3.24 -90.11 -0.29 -1.22 16 19 C -0.11 -0.74 6.32 -24.55 -0.16 -0.90 16 20 C -0.12 -0.71 6.84 -24.88 -0.17 -0.88 16 21 C -0.13 -0.84 6.80 -25.62 -0.17 -1.01 16 22 C -0.11 -0.98 6.17 -25.62 -0.16 -1.14 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.94 6.88 -51.93 -0.36 0.58 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -34.52 335.30 -7.96 -42.48 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.49 Total: 3.31 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.74 Total: 3.37 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.06 Total: -47.91 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.52 -7.96 -42.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701247778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.993 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds