Wall clock time and date at job start Mon Mar 30 2020 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99850 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47053 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47288 * 65.00104 * 12 11 10 14 14 C 1.46892 * 111.00060 * 179.97438 * 13 12 11 15 15 H 1.08995 * 110.43942 * 323.90637 * 14 13 12 16 16 C 1.54637 * 110.48415 * 201.22409 * 14 13 12 17 17 C 1.54480 * 101.76494 * 216.52101 * 16 14 13 18 18 N 1.46769 * 105.47192 * 25.41865 * 17 16 14 19 19 C 1.46500 * 124.34815 * 162.96026 * 18 17 16 20 20 C 1.53002 * 117.49770 * 188.74969 * 19 18 17 21 21 C 1.52998 * 117.49884 * 120.08954 * 19 18 17 22 22 C 1.34419 * 111.30095 * 342.98091 * 18 17 16 23 23 O 1.21276 * 124.94122 * 180.36864 * 22 18 17 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09000 * 109.47029 * 299.99627 * 11 10 9 28 28 H 1.09006 * 109.47421 * 59.99544 * 11 10 9 29 29 H 1.09006 * 109.46814 * 184.99737 * 12 11 10 30 30 H 1.08992 * 109.47132 * 304.99513 * 12 11 10 31 31 H 1.00907 * 110.99891 * 56.03975 * 13 12 11 32 32 H 1.08996 * 110.97224 * 334.64287 * 16 14 13 33 33 H 1.09004 * 110.96615 * 98.41020 * 16 14 13 34 34 H 1.09001 * 110.25030 * 266.41865 * 17 16 14 35 35 H 1.08998 * 110.31767 * 144.45493 * 17 16 14 36 36 H 1.09004 * 115.55114 * 334.41648 * 19 18 17 37 37 H 1.08996 * 117.49957 * 359.97438 * 20 19 18 38 38 H 1.08999 * 117.50075 * 145.01707 * 20 19 18 39 39 H 1.09004 * 117.49916 * 214.97900 * 21 19 18 40 40 H 1.09000 * 117.49991 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0021 12 6 5.8070 -4.1324 0.0025 13 7 5.3687 -4.7565 -1.2530 14 6 5.7319 -6.1794 -1.2883 15 1 6.6950 -6.3385 -0.8035 16 6 5.7653 -6.6933 -2.7464 17 6 5.2133 -8.1273 -2.5877 18 7 4.3860 -8.0965 -1.3757 19 6 3.3891 -9.1125 -1.0294 20 6 2.4720 -8.8254 0.1612 21 6 3.5818 -9.8724 0.2845 22 6 4.6604 -7.0160 -0.6246 23 8 4.1262 -6.7502 0.4312 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 5.8159 -2.1703 -0.8874 28 1 5.8146 -2.1708 0.8926 29 1 6.8898 -4.2194 0.0929 30 1 5.3306 -4.6353 0.8440 31 1 5.7459 -4.2673 -2.0509 32 1 5.1172 -6.0943 -3.3861 33 1 6.7850 -6.7083 -3.1314 34 1 6.0327 -8.8358 -2.4671 35 1 4.6062 -8.3970 -3.4519 36 1 2.9650 -9.6610 -1.8705 37 1 2.6107 -7.8808 0.6870 38 1 1.4447 -9.1853 0.1035 39 1 3.2843 -10.9208 0.3079 40 1 4.4507 -9.6167 0.8910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708925984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:06 Heat of formation + Delta-G solvation = -34.531531 kcal Electronic energy + Delta-G solvation = -20583.806575 eV Core-core repulsion = 17400.179585 eV Total energy + Delta-G solvation = -3183.626990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70792 -37.41532 -36.60181 -36.37486 -34.63026 -32.51997 -30.61538 -28.71514 -27.39570 -25.85851 -23.10737 -22.45050 -21.87157 -21.73919 -21.41125 -19.02729 -17.24628 -16.83912 -16.64594 -15.74863 -15.49454 -15.07913 -14.89052 -14.74558 -14.07948 -13.98975 -13.91391 -13.54511 -13.11451 -12.78408 -12.62019 -12.43630 -12.34814 -11.90723 -11.58676 -11.45022 -11.20735 -11.05955 -10.87177 -10.66590 -10.47791 -10.37683 -9.78303 -9.52913 -9.06418 -8.73786 -8.56910 -8.35395 -8.22923 -6.02075 -3.99939 2.58942 2.80628 3.29924 3.36474 3.38626 3.78063 4.08970 4.19793 4.35027 4.43054 4.68943 4.74235 4.76198 4.83823 4.93573 5.02301 5.15117 5.23424 5.28822 5.44823 5.48393 5.53461 5.60848 5.67063 5.75655 5.88662 5.97032 5.98733 6.25226 6.35028 6.68223 6.69521 6.97346 7.08406 7.10606 7.44840 7.70286 8.16570 8.30050 8.79722 9.13036 9.57761 11.11326 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.004053 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.957380 B = 6906.097595 C = 7549.389083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.362 6.362 11 C 0.063 3.937 12 C 0.062 3.938 13 N -0.655 5.655 14 C 0.055 3.945 15 H 0.077 0.923 16 C -0.136 4.136 17 C 0.111 3.889 18 N -0.599 5.599 19 C 0.082 3.918 20 C -0.188 4.188 21 C -0.194 4.194 22 C 0.529 3.471 23 O -0.502 6.502 24 H 0.265 0.735 25 H -0.004 1.004 26 H 0.000 1.000 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.346 0.654 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.480 -18.392 -6.397 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.091 3.909 10 O -0.280 6.280 11 C -0.016 4.016 12 C -0.067 4.067 13 N -0.288 5.288 14 C -0.058 4.058 15 H 0.095 0.905 16 C -0.174 4.174 17 C -0.012 4.012 18 N -0.333 5.333 19 C -0.022 4.022 20 C -0.225 4.225 21 C -0.233 4.233 22 C 0.316 3.684 23 O -0.375 6.375 24 H 0.075 0.925 25 H 0.013 0.987 26 H 0.017 0.983 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.219 -18.421 -5.581 23.930 hybrid contribution 1.521 1.159 -0.269 1.931 sum 15.740 -17.262 -5.849 24.082 Atomic orbital electron populations 1.69888 1.06042 1.26894 1.50827 1.24773 0.94780 0.98642 0.94853 0.86853 0.80351 0.83889 0.78635 1.20032 1.19179 1.20865 1.20926 0.88376 0.95323 1.50479 0.89889 1.20588 0.96236 0.80038 0.93990 1.88074 1.16613 1.28520 1.94827 1.22288 0.85953 0.94461 0.98864 1.22129 0.96254 0.94961 0.93331 1.60066 1.64510 0.99252 1.05012 1.22159 0.96452 0.90871 0.96351 0.90545 1.22839 1.02931 0.95669 0.95921 1.21977 0.94364 0.97291 0.87559 1.47557 1.38468 1.23681 1.23567 1.21472 0.94306 0.93861 0.92563 1.23784 0.95166 1.03026 1.00528 1.23350 1.01879 0.97409 1.00637 1.20774 0.83047 0.80460 0.84158 1.90619 1.53223 1.71596 1.22033 0.92497 0.98655 0.98252 0.94723 0.93943 0.94665 0.88966 0.83394 0.88547 0.89152 0.91196 0.90198 0.85590 0.84752 0.88487 0.88455 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.71 13.96 55.43 0.77 -27.93 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -16.08 9.99 -34.44 -0.34 -16.42 16 8 H 0.08 2.88 8.06 -52.49 -0.42 2.46 16 9 C 0.17 4.48 4.76 36.00 0.17 4.65 16 10 O -0.36 -9.08 10.27 -35.23 -0.36 -9.45 16 11 C 0.06 1.15 6.22 37.16 0.23 1.38 16 12 C 0.06 0.97 5.87 -3.83 -0.02 0.94 16 13 N -0.65 -9.64 6.25 -106.74 -0.67 -10.30 16 14 C 0.06 0.65 3.24 -67.72 -0.22 0.43 16 15 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 16 C -0.14 -1.06 6.62 -25.09 -0.17 -1.22 16 17 C 0.11 0.85 7.35 -3.12 -0.02 0.83 16 18 N -0.60 -7.07 3.27 -164.84 -0.54 -7.61 16 19 C 0.08 0.90 6.88 -67.93 -0.47 0.43 16 20 C -0.19 -2.42 9.77 -26.69 -0.26 -2.69 16 21 C -0.19 -2.06 10.34 -26.69 -0.28 -2.33 16 22 C 0.53 8.01 7.50 -10.86 -0.08 7.93 16 23 O -0.50 -9.76 13.61 5.56 0.08 -9.68 16 24 H 0.27 7.82 8.31 -40.82 -0.34 7.49 16 25 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 26 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.09 1.70 7.12 -51.93 -0.37 1.33 16 31 H 0.35 4.28 8.46 -39.29 -0.33 3.94 16 32 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 2.29 5.30 -51.93 -0.28 2.01 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -37.21 328.92 -8.37 -45.58 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.39 Total: 1.00 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.56 Total: -4.00 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.43 Total: -45.85 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.29 Total: -19.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.21 -8.37 -45.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708925984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.053 kcal (2) G-P(sol) polarization free energy of solvation -37.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds