Wall clock time and date at job start Mon Mar 30 2020 05:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99850 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47053 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47288 * 65.00104 * 12 11 10 14 14 C 1.46892 * 111.00060 * 179.97438 * 13 12 11 15 15 H 1.08995 * 110.43942 * 323.90637 * 14 13 12 16 16 C 1.54637 * 110.48415 * 201.22409 * 14 13 12 17 17 C 1.54480 * 101.76494 * 216.52101 * 16 14 13 18 18 N 1.46769 * 105.47192 * 25.41865 * 17 16 14 19 19 C 1.46500 * 124.34815 * 162.96026 * 18 17 16 20 20 C 1.53002 * 117.49770 * 188.74969 * 19 18 17 21 21 C 1.52998 * 117.49884 * 120.08954 * 19 18 17 22 22 C 1.34419 * 111.30095 * 342.98091 * 18 17 16 23 23 O 1.21276 * 124.94122 * 180.36864 * 22 18 17 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09000 * 109.47029 * 299.99627 * 11 10 9 28 28 H 1.09006 * 109.47421 * 59.99544 * 11 10 9 29 29 H 1.09006 * 109.46814 * 184.99737 * 12 11 10 30 30 H 1.08992 * 109.47132 * 304.99513 * 12 11 10 31 31 H 1.00907 * 110.99891 * 56.03975 * 13 12 11 32 32 H 1.08996 * 110.97224 * 334.64287 * 16 14 13 33 33 H 1.09004 * 110.96615 * 98.41020 * 16 14 13 34 34 H 1.09001 * 110.25030 * 266.41865 * 17 16 14 35 35 H 1.08998 * 110.31767 * 144.45493 * 17 16 14 36 36 H 1.09004 * 115.55114 * 334.41648 * 19 18 17 37 37 H 1.08996 * 117.49957 * 359.97438 * 20 19 18 38 38 H 1.08999 * 117.50075 * 145.01707 * 20 19 18 39 39 H 1.09004 * 117.49916 * 214.97900 * 21 19 18 40 40 H 1.09000 * 117.49991 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0021 12 6 5.8070 -4.1324 0.0025 13 7 5.3687 -4.7565 -1.2530 14 6 5.7319 -6.1794 -1.2883 15 1 6.6950 -6.3385 -0.8035 16 6 5.7653 -6.6933 -2.7464 17 6 5.2133 -8.1273 -2.5877 18 7 4.3860 -8.0965 -1.3757 19 6 3.3891 -9.1125 -1.0294 20 6 2.4720 -8.8254 0.1612 21 6 3.5818 -9.8724 0.2845 22 6 4.6604 -7.0160 -0.6246 23 8 4.1262 -6.7502 0.4312 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 5.8159 -2.1703 -0.8874 28 1 5.8146 -2.1708 0.8926 29 1 6.8898 -4.2194 0.0929 30 1 5.3306 -4.6353 0.8440 31 1 5.7459 -4.2673 -2.0509 32 1 5.1172 -6.0943 -3.3861 33 1 6.7850 -6.7083 -3.1314 34 1 6.0327 -8.8358 -2.4671 35 1 4.6062 -8.3970 -3.4519 36 1 2.9650 -9.6610 -1.8705 37 1 2.6107 -7.8808 0.6870 38 1 1.4447 -9.1853 0.1035 39 1 3.2843 -10.9208 0.3079 40 1 4.4507 -9.6167 0.8910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708925984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:05 Heat of formation + Delta-G solvation = -64.381995 kcal Electronic energy + Delta-G solvation = -20585.100988 eV Core-core repulsion = 17400.179585 eV Total energy + Delta-G solvation = -3184.921403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66903 -38.89899 -37.81761 -37.48477 -35.82652 -34.78810 -31.77455 -30.25389 -28.94572 -27.00116 -24.04301 -23.89847 -23.42240 -22.92093 -22.47485 -20.03069 -19.07217 -18.09741 -17.72833 -17.46366 -16.71235 -16.54987 -16.27527 -15.87072 -15.64500 -15.19920 -14.85481 -14.68299 -14.60316 -14.23215 -14.05762 -13.82347 -13.36243 -13.12336 -12.90235 -12.85974 -12.53926 -12.39147 -12.21407 -11.89179 -11.80569 -11.78081 -11.36963 -11.32309 -10.92537 -10.64811 -10.30705 -9.49979 -9.27918 -8.37508 -6.45956 1.31624 1.36663 1.47729 1.52321 1.94781 2.29633 2.86925 2.94525 3.10613 3.19833 3.34599 3.61287 3.83913 3.95357 4.00334 4.11494 4.19254 4.25844 4.29380 4.45447 4.52770 4.55709 4.62371 4.64878 4.73105 4.76713 4.95650 4.97110 5.01410 5.05910 5.14221 5.27370 5.44043 5.75573 5.90200 5.99445 6.14542 6.50187 6.58670 6.82982 7.19141 7.24961 8.80642 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.004053 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.957380 B = 6906.097595 C = 7549.389083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.245 1.245 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.019 0.981 9 C 0.179 3.821 10 O -0.399 6.399 11 C 0.052 3.948 12 C 0.071 3.929 13 N -0.683 5.683 14 C 0.056 3.944 15 H 0.097 0.903 16 C -0.122 4.122 17 C 0.106 3.894 18 N -0.600 5.600 19 C 0.084 3.916 20 C -0.221 4.221 21 C -0.174 4.174 22 C 0.505 3.495 23 O -0.564 6.564 24 H 0.273 0.727 25 H 0.014 0.986 26 H 0.009 0.991 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.360 0.640 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.774 -18.245 -8.566 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.169 1.169 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.037 0.963 9 C 0.104 3.896 10 O -0.319 6.319 11 C -0.025 4.025 12 C -0.057 4.057 13 N -0.319 5.319 14 C -0.057 4.057 15 H 0.114 0.886 16 C -0.160 4.160 17 C -0.015 4.015 18 N -0.332 5.332 19 C -0.019 4.019 20 C -0.259 4.259 21 C -0.213 4.213 22 C 0.292 3.708 23 O -0.442 6.442 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.182 0.818 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.180 0.820 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.546 -18.322 -7.803 26.542 hybrid contribution 0.423 0.967 0.410 1.132 sum 17.969 -17.355 -7.393 26.053 Atomic orbital electron populations 1.70060 1.08456 1.28841 1.51173 1.25943 0.95866 1.03656 0.93260 0.85501 0.79284 0.76850 0.79981 1.17914 1.16881 1.19725 1.21190 0.91311 0.93568 1.52455 0.96252 1.20295 0.93086 0.81366 0.94899 1.88032 1.21123 1.27586 1.95136 1.22694 0.82300 0.96856 1.00626 1.21977 0.98256 0.92755 0.92762 1.59879 1.65918 1.01054 1.05034 1.22264 0.95747 0.88717 0.98993 0.88556 1.22899 1.05230 0.95072 0.92782 1.22360 0.94976 0.97914 0.86289 1.47835 1.38350 1.22751 1.24295 1.21860 0.93305 0.93393 0.93383 1.23630 0.96940 1.02235 1.03089 1.23339 0.99751 0.98269 0.99900 1.21634 0.83588 0.81687 0.83856 1.90604 1.55578 1.73260 1.24776 0.91763 0.96799 0.97339 0.92118 0.92664 0.90228 0.92866 0.81818 0.89442 0.85045 0.88220 0.88098 0.81964 0.89540 0.87143 0.85210 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.44 13.96 21.45 0.30 -62.14 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.96 45.08 27.47 68.60 1.88 46.97 16 4 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -35.91 9.99 25.60 0.26 -35.65 16 8 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 9 C 0.18 9.66 4.76 71.24 0.34 10.00 16 10 O -0.40 -20.61 10.27 -148.98 -1.53 -22.14 16 11 C 0.05 1.87 6.22 71.98 0.45 2.32 16 12 C 0.07 2.20 5.87 86.30 0.51 2.71 16 13 N -0.68 -19.76 6.25 -491.63 -3.07 -22.83 16 14 C 0.06 1.25 3.24 44.91 0.15 1.40 16 15 H 0.10 1.75 7.87 -2.39 -0.02 1.73 16 16 C -0.12 -1.51 6.62 31.65 0.21 -1.30 16 17 C 0.11 1.26 7.35 86.83 0.64 1.89 16 18 N -0.60 -13.68 3.27 -794.03 -2.60 -16.28 16 19 C 0.08 1.78 6.88 44.99 0.31 2.09 16 20 C -0.22 -6.14 9.77 30.62 0.30 -5.84 16 21 C -0.17 -3.65 10.34 30.62 0.32 -3.33 16 22 C 0.50 15.81 7.50 87.90 0.66 16.47 16 23 O -0.56 -24.12 13.61 -3.02 -0.04 -24.16 16 24 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 25 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 26 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 1.74 8.08 -2.38 -0.02 1.72 16 30 H 0.05 2.07 7.12 -2.39 -0.02 2.05 16 31 H 0.36 8.26 8.46 -89.69 -0.76 7.50 16 32 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.16 2.21 8.14 -2.38 -0.02 2.20 16 37 H 0.09 3.35 5.30 -2.39 -0.01 3.34 16 38 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -90.38 328.92 -0.25 -90.64 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.21 Total: 18.08 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.59 Total: -8.15 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -5.37 Total: -101.24 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.57 Total: -46.30 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -90.38 -0.25 -90.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708925984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.255 kcal (2) G-P(sol) polarization free energy of solvation -90.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds