Wall clock time and date at job start Mon Mar 30 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99774 * 2 1 3 5 5 C 1.52994 * 109.47427 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47147 * 300.00053 * 5 4 2 7 7 C 1.53001 * 109.47000 * 59.99685 * 6 5 4 8 8 H 1.08996 * 109.47089 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47175 * 60.00132 * 7 6 5 10 10 C 1.46503 * 119.99898 * 1.07657 * 9 7 6 11 11 C 1.34779 * 120.00193 * 181.07620 * 9 7 6 12 12 O 1.21436 * 119.99817 * 3.13373 * 11 9 7 13 13 C 1.48829 * 119.99959 * 183.13499 * 11 9 7 14 14 O 1.21501 * 120.00087 * 353.91663 * 13 11 9 15 15 N 1.34777 * 119.99601 * 173.92298 * 13 11 9 16 16 C 1.36127 * 119.99592 * 179.97438 * 15 13 11 17 17 H 1.08001 * 120.00146 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99726 * 179.97438 * 16 15 13 19 19 N 1.31012 * 120.00302 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47075 * 120.00266 * 20 18 16 23 23 H 1.48501 * 109.47625 * 240.00441 * 20 18 16 24 24 C 1.53000 * 109.47072 * 239.99529 * 2 1 3 25 25 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47005 * 300.00306 * 1 2 3 27 27 H 1.09002 * 109.46948 * 60.00281 * 1 2 3 28 28 H 1.09002 * 109.47200 * 300.00303 * 4 2 1 29 29 H 1.09005 * 109.46994 * 59.99575 * 4 2 1 30 30 H 1.09005 * 109.47021 * 59.99410 * 5 4 2 31 31 H 1.08998 * 109.47685 * 179.97438 * 5 4 2 32 32 H 1.08991 * 109.46932 * 300.00106 * 6 5 4 33 33 H 1.08996 * 109.47317 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47099 * 23.83269 * 10 9 7 35 35 H 1.09000 * 109.47062 * 263.82658 * 10 9 7 36 36 H 1.09007 * 109.47081 * 143.82863 * 10 9 7 37 37 H 0.96999 * 120.00622 * 359.97438 * 15 13 11 38 38 H 0.97003 * 120.00486 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47079 * 60.00270 * 24 2 1 40 40 H 1.09000 * 109.47494 * 300.00290 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 7 4.0584 0.6610 -1.2486 10 6 4.9196 1.1335 -0.1617 11 6 3.7149 1.4972 -2.2483 12 8 2.9554 1.1230 -3.1189 13 6 4.2664 2.8790 -2.2852 14 8 4.9366 3.2906 -1.3591 15 7 4.0222 3.6738 -3.3459 16 6 4.5262 4.9379 -3.3794 17 1 5.1220 5.3037 -2.5563 18 6 4.2739 5.7609 -4.4782 19 7 3.5515 5.3170 -5.4770 20 14 4.9648 7.4958 -4.5240 21 1 5.7398 7.7529 -3.2835 22 1 5.8556 7.6429 -5.7030 23 1 3.8490 8.4707 -4.6219 24 6 2.0400 -0.7214 -1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2074 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 3.9329 0.3072 1.2498 31 1 3.9333 -1.2341 2.1399 32 1 3.7176 -2.4693 0.0002 33 1 5.1705 -1.4409 0.0004 34 1 5.4261 0.2838 0.2960 35 1 4.3129 1.6417 0.5878 36 1 5.6605 1.8266 -0.5604 37 1 3.4874 3.3452 -4.0854 38 1 3.3758 5.8891 -6.2405 39 1 1.6767 -0.2076 -2.1392 40 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042495246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:23 Heat of formation + Delta-G solvation = -63.698010 kcal Electronic energy + Delta-G solvation = -21740.313852 eV Core-core repulsion = 18555.422108 eV Total energy + Delta-G solvation = -3184.891744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46636 -38.43599 -36.85726 -34.97688 -33.93699 -32.03974 -31.35729 -30.41660 -26.91353 -25.99800 -25.44606 -23.43801 -22.01064 -20.79113 -19.79615 -18.58566 -17.94703 -16.51625 -15.97003 -15.63373 -15.17729 -14.92440 -14.38359 -14.24359 -13.89650 -13.83586 -13.27904 -12.95995 -12.93403 -12.35357 -12.33171 -12.10131 -11.90198 -11.78360 -11.72698 -11.44367 -11.30570 -11.20625 -10.65187 -10.45702 -10.40111 -10.29282 -10.18300 -10.04238 -9.73861 -9.66534 -8.26557 -8.14837 -7.87134 -6.65825 -3.98288 2.49455 3.14399 3.16121 3.22145 3.35391 4.05380 4.28348 4.66862 4.79991 4.82828 4.98311 5.18627 5.19008 5.21751 5.45625 5.51388 5.54437 5.59037 5.66590 5.74732 5.84876 5.92249 5.96056 6.00910 6.05897 6.08999 6.14282 6.24457 6.31826 6.38576 6.55267 6.59110 6.64067 7.08390 7.32321 7.72248 7.83090 8.34764 8.65009 8.97971 9.34077 9.86888 10.49129 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.004869 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.172244 B = 5748.786708 C = 6022.271746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.150 4.150 6 C -0.122 4.122 7 C 0.149 3.851 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.066 3.934 11 C 0.513 3.487 12 O -0.545 6.545 13 C 0.395 3.605 14 O -0.590 6.590 15 N -0.500 5.500 16 C -0.305 4.305 17 H 0.113 0.887 18 C 0.031 3.969 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.132 4.132 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.404 0.596 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 -11.311 9.799 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.187 4.187 6 C -0.160 4.160 7 C 0.046 3.954 8 H 0.088 0.912 9 N -0.325 5.325 10 C -0.075 4.075 11 C 0.299 3.701 12 O -0.422 6.422 13 C 0.180 3.820 14 O -0.479 6.479 15 N -0.134 5.134 16 C -0.436 4.436 17 H 0.130 0.870 18 C -0.176 4.176 19 N -0.508 5.508 20 Si 0.763 3.237 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.170 4.170 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.534 -11.178 9.748 14.911 hybrid contribution -0.108 0.510 -0.489 0.715 sum -1.642 -10.667 9.259 14.220 Atomic orbital electron populations 1.21799 0.95596 1.01199 1.01586 1.21052 0.95058 1.00223 0.94509 0.91092 1.21552 0.95476 1.00083 0.97573 1.22225 0.96160 1.03456 0.96845 1.21786 1.00675 0.99213 0.94324 1.21001 0.94418 0.82124 0.97820 0.91173 1.47622 1.49973 1.10684 1.24214 1.22584 0.95461 0.99617 0.89856 1.20618 0.81194 0.87249 0.81041 1.90632 1.35780 1.77561 1.38266 1.18994 0.89978 0.86598 0.86432 1.90464 1.45065 1.74948 1.37416 1.41578 1.42495 1.12150 1.17187 1.19911 1.30148 0.88244 1.05292 0.86958 1.25572 0.96256 1.01014 0.94754 1.69491 1.35457 1.38162 1.07682 0.85686 0.78741 0.80459 0.78825 1.18736 1.20331 1.20324 1.22046 0.94720 1.00680 0.99595 0.93105 0.93076 0.92603 0.92422 0.92550 0.88882 0.92328 0.90877 0.91266 0.92109 0.92726 0.87178 0.76067 0.91017 0.89190 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.09 -1.23 2.56 -90.62 -0.23 -1.46 16 3 H 0.07 1.17 7.60 -51.93 -0.39 0.78 16 4 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.15 -1.64 5.27 -26.73 -0.14 -1.78 16 6 C -0.12 -1.36 4.91 -26.73 -0.13 -1.49 16 7 C 0.15 2.17 2.98 -67.90 -0.20 1.97 16 8 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 9 N -0.59 -10.35 2.25 -174.64 -0.39 -10.74 16 10 C 0.07 1.06 7.39 59.85 0.44 1.50 16 11 C 0.51 11.19 7.45 -11.88 -0.09 11.10 16 12 O -0.54 -12.65 14.40 5.42 0.08 -12.57 16 13 C 0.40 9.83 7.70 -11.88 -0.09 9.74 16 14 O -0.59 -15.12 12.70 5.36 0.07 -15.05 16 15 N -0.50 -13.31 5.24 -11.59 -0.06 -13.38 16 16 C -0.31 -8.35 9.67 -15.14 -0.15 -8.49 16 17 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 18 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 19 N -0.87 -23.34 13.03 55.53 0.72 -22.62 16 20 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16 21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 24 C -0.13 -1.91 4.51 -26.70 -0.12 -2.03 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.14 3.68 -51.93 -0.19 0.95 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 34 H 0.06 0.77 4.95 -51.93 -0.26 0.51 16 35 H 0.05 0.87 6.70 -51.93 -0.35 0.52 16 36 H 0.11 2.08 5.40 -51.93 -0.28 1.80 16 37 H 0.40 10.92 7.36 -40.82 -0.30 10.62 16 38 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 39 H 0.09 1.59 5.99 -51.93 -0.31 1.27 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -28.94 308.14 -6.32 -35.26 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.75 Total: 12.50 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.60 Total: 6.95 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.27 Total: -46.74 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.15 Total: -27.62 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.94 -6.32 -35.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042495246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.438 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds