Wall clock time and date at job start Mon Mar 30 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99774 * 2 1 3 5 5 C 1.52994 * 109.47427 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47147 * 300.00053 * 5 4 2 7 7 C 1.53001 * 109.47000 * 59.99685 * 6 5 4 8 8 H 1.08996 * 109.47089 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47175 * 60.00132 * 7 6 5 10 10 C 1.46503 * 119.99898 * 1.07657 * 9 7 6 11 11 C 1.34779 * 120.00193 * 181.07620 * 9 7 6 12 12 O 1.21436 * 119.99817 * 3.13373 * 11 9 7 13 13 C 1.48829 * 119.99959 * 183.13499 * 11 9 7 14 14 O 1.21501 * 120.00087 * 353.91663 * 13 11 9 15 15 N 1.34777 * 119.99601 * 173.92298 * 13 11 9 16 16 C 1.36127 * 119.99592 * 179.97438 * 15 13 11 17 17 H 1.08001 * 120.00146 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99726 * 179.97438 * 16 15 13 19 19 N 1.31012 * 120.00302 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47357 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47075 * 120.00266 * 20 18 16 23 23 H 1.48501 * 109.47625 * 240.00441 * 20 18 16 24 24 C 1.53000 * 109.47072 * 239.99529 * 2 1 3 25 25 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47005 * 300.00306 * 1 2 3 27 27 H 1.09002 * 109.46948 * 60.00281 * 1 2 3 28 28 H 1.09002 * 109.47200 * 300.00303 * 4 2 1 29 29 H 1.09005 * 109.46994 * 59.99575 * 4 2 1 30 30 H 1.09005 * 109.47021 * 59.99410 * 5 4 2 31 31 H 1.08998 * 109.47685 * 179.97438 * 5 4 2 32 32 H 1.08991 * 109.46932 * 300.00106 * 6 5 4 33 33 H 1.08996 * 109.47317 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47099 * 23.83269 * 10 9 7 35 35 H 1.09000 * 109.47062 * 263.82658 * 10 9 7 36 36 H 1.09007 * 109.47081 * 143.82863 * 10 9 7 37 37 H 0.96999 * 120.00622 * 359.97438 * 15 13 11 38 38 H 0.97003 * 120.00486 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47079 * 60.00270 * 24 2 1 40 40 H 1.09000 * 109.47494 * 300.00290 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 7 4.0584 0.6610 -1.2486 10 6 4.9196 1.1335 -0.1617 11 6 3.7149 1.4972 -2.2483 12 8 2.9554 1.1230 -3.1189 13 6 4.2664 2.8790 -2.2852 14 8 4.9366 3.2906 -1.3591 15 7 4.0222 3.6738 -3.3459 16 6 4.5262 4.9379 -3.3794 17 1 5.1220 5.3037 -2.5563 18 6 4.2739 5.7609 -4.4782 19 7 3.5515 5.3170 -5.4770 20 14 4.9648 7.4958 -4.5240 21 1 5.7398 7.7529 -3.2835 22 1 5.8556 7.6429 -5.7030 23 1 3.8490 8.4707 -4.6219 24 6 2.0400 -0.7214 -1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2074 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 3.9329 0.3072 1.2498 31 1 3.9333 -1.2341 2.1399 32 1 3.7176 -2.4693 0.0002 33 1 5.1705 -1.4409 0.0004 34 1 5.4261 0.2838 0.2960 35 1 4.3129 1.6417 0.5878 36 1 5.6605 1.8266 -0.5604 37 1 3.4874 3.3452 -4.0854 38 1 3.3758 5.8891 -6.2405 39 1 1.6767 -0.2076 -2.1392 40 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042495246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:22 Heat of formation + Delta-G solvation = -82.038743 kcal Electronic energy + Delta-G solvation = -21741.109166 eV Core-core repulsion = 18555.422108 eV Total energy + Delta-G solvation = -3185.687057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94182 -40.05343 -38.60916 -36.65522 -35.60688 -33.49949 -33.00013 -31.59311 -28.26115 -27.65309 -26.79502 -25.07681 -23.15129 -21.97592 -21.22188 -20.37318 -19.66602 -18.26967 -17.55213 -17.05903 -16.87489 -16.35996 -15.91827 -15.57289 -15.45022 -15.25713 -14.73485 -14.41983 -14.28039 -13.95112 -13.68674 -13.29039 -13.18960 -13.08623 -12.97392 -12.93038 -12.54719 -12.51570 -12.36413 -12.08034 -11.86222 -11.70386 -11.61982 -11.26423 -11.06185 -10.86268 -10.25957 -9.82622 -9.54955 -8.64278 -6.09008 0.65557 1.40654 1.45607 1.56555 1.78654 2.28179 2.38598 3.13175 3.16564 3.72010 3.81148 3.83418 4.02159 4.14909 4.22511 4.34514 4.49190 4.51053 4.58329 4.66148 4.76028 4.78350 4.86550 4.92749 5.02899 5.10447 5.11393 5.19306 5.27054 5.33215 5.33267 5.38604 5.43605 5.57375 5.70612 5.77140 6.17643 6.36577 6.81841 7.02501 7.31585 7.82889 8.51996 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.004869 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.172244 B = 5748.786708 C = 6022.271746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.032 0.968 4 C -0.104 4.104 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.139 3.861 8 H 0.067 0.933 9 N -0.574 5.574 10 C 0.069 3.931 11 C 0.511 3.489 12 O -0.565 6.565 13 C 0.391 3.609 14 O -0.600 6.600 15 N -0.516 5.516 16 C -0.342 4.342 17 H 0.099 0.901 18 C -0.007 4.007 19 N -0.900 5.900 20 Si 1.010 2.990 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.129 4.129 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.398 0.602 38 H 0.287 0.713 39 H 0.050 0.950 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -12.883 11.532 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.051 0.949 4 C -0.141 4.141 5 C -0.187 4.187 6 C -0.152 4.152 7 C 0.038 3.962 8 H 0.085 0.915 9 N -0.307 5.307 10 C -0.072 4.072 11 C 0.295 3.705 12 O -0.445 6.445 13 C 0.177 3.823 14 O -0.490 6.490 15 N -0.150 5.150 16 C -0.472 4.472 17 H 0.117 0.883 18 C -0.210 4.210 19 N -0.538 5.538 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.192 1.192 24 C -0.167 4.167 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.172 -12.780 11.514 17.242 hybrid contribution -0.238 0.877 -0.955 1.319 sum -1.411 -11.903 10.559 15.974 Atomic orbital electron populations 1.21780 0.94789 1.02369 1.01006 1.21033 0.95854 0.98336 0.95672 0.94930 1.21524 0.95751 1.00837 0.96016 1.22214 0.95892 1.02730 0.97858 1.21811 1.01385 0.99971 0.92007 1.21370 0.94715 0.80113 1.00039 0.91522 1.47712 1.48721 1.11446 1.22798 1.22605 0.94639 1.00845 0.89075 1.20125 0.81470 0.86604 0.82283 1.90626 1.36750 1.77652 1.39462 1.19692 0.89120 0.87831 0.85691 1.90460 1.45152 1.75815 1.37527 1.41680 1.43190 1.12510 1.17639 1.19992 1.31891 0.89255 1.06074 0.88280 1.26526 0.95917 1.04893 0.93696 1.69564 1.36130 1.39876 1.08272 0.84646 0.78273 0.75028 0.78990 1.18663 1.19126 1.19246 1.21988 0.94594 1.01834 0.98330 0.90988 0.92187 0.94722 0.91814 0.90432 0.90646 0.89531 0.88049 0.90054 0.87796 0.92639 0.90229 0.76776 0.90263 0.93121 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 2 C -0.09 -2.36 2.56 -10.79 -0.03 -2.39 16 3 H 0.03 1.09 7.60 -2.39 -0.02 1.07 16 4 C -0.10 -1.97 5.20 30.59 0.16 -1.81 16 5 C -0.15 -2.69 5.27 30.59 0.16 -2.52 16 6 C -0.11 -2.07 4.91 30.60 0.15 -1.92 16 7 C 0.14 3.82 2.98 45.01 0.13 3.96 16 8 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 9 N -0.57 -20.07 2.25 -824.76 -1.86 -21.93 16 10 C 0.07 2.16 7.39 127.77 0.94 3.10 16 11 C 0.51 23.10 7.45 87.08 0.65 23.75 16 12 O -0.56 -27.43 14.40 -3.51 -0.05 -27.48 16 13 C 0.39 20.38 7.70 87.08 0.67 21.05 16 14 O -0.60 -31.95 12.70 -3.72 -0.05 -32.00 16 15 N -0.52 -28.90 5.24 -308.87 -1.62 -30.52 16 16 C -0.34 -19.48 9.67 84.35 0.82 -18.67 16 17 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 18 C -0.01 -0.36 5.51 85.14 0.47 0.11 16 19 N -0.90 -49.39 13.03 21.76 0.28 -49.11 16 20 Si 1.01 41.35 29.56 68.60 2.03 43.38 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 24 C -0.13 -3.60 4.51 30.61 0.14 -3.46 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 1.64 3.68 -2.38 -0.01 1.63 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.32 6.88 -2.39 -0.02 1.31 16 34 H 0.10 2.33 4.95 -2.39 -0.01 2.32 16 35 H 0.06 1.75 6.70 -2.39 -0.02 1.73 16 36 H 0.08 3.03 5.40 -2.40 -0.01 3.02 16 37 H 0.40 22.77 7.36 -92.71 -0.68 22.08 16 38 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 39 H 0.05 1.83 5.99 -2.39 -0.01 1.81 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.95 308.14 4.04 -61.91 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.37 Total: 37.24 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 4.92 Total: 18.51 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.19 Total: -101.56 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -0.10 Total: -59.48 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -65.95 4.04 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042495246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.130 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds