Wall clock time and date at job start Mon Mar 30 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47149 * 2 1 4 4 H 1.09002 * 109.47312 * 54.99789 * 3 2 1 5 5 C 1.52997 * 109.47504 * 175.00128 * 3 2 1 6 6 C 1.53778 * 113.61277 * 279.13792 * 5 3 2 7 7 C 1.53954 * 87.01987 * 220.04450 * 6 5 3 8 8 C 1.53778 * 87.11102 * 25.36205 * 7 6 5 9 9 N 1.46500 * 109.46939 * 294.99950 * 3 2 1 10 10 C 1.46501 * 120.00143 * 300.00309 * 9 3 2 11 11 C 1.34776 * 119.99984 * 119.99641 * 9 3 2 12 12 O 1.21439 * 119.99890 * 5.35922 * 11 9 3 13 13 C 1.48839 * 120.00139 * 185.35591 * 11 9 3 14 14 O 1.21500 * 119.99470 * 5.98836 * 13 11 9 15 15 N 1.34770 * 120.00178 * 185.98889 * 13 11 9 16 16 C 1.36114 * 120.00057 * 180.02562 * 15 13 11 17 17 H 1.08004 * 120.00007 * 359.97438 * 16 15 13 18 18 C 1.39592 * 120.00215 * 180.02562 * 16 15 13 19 19 N 1.31014 * 120.00280 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99593 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46920 * 90.00739 * 20 18 16 22 22 H 1.48502 * 109.46851 * 210.00104 * 20 18 16 23 23 H 1.48492 * 109.47480 * 330.00446 * 20 18 16 24 24 H 1.09004 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47384 * 300.00263 * 1 2 3 26 26 H 1.08996 * 109.47567 * 60.00265 * 1 2 3 27 27 H 1.09006 * 109.47468 * 119.99693 * 2 1 3 28 28 H 1.09001 * 109.47384 * 239.99737 * 2 1 3 29 29 H 1.09007 * 112.84659 * 50.32549 * 5 3 2 30 30 H 1.09000 * 113.61685 * 334.56469 * 6 5 3 31 31 H 1.09000 * 113.62164 * 105.46818 * 6 5 3 32 32 H 1.08999 * 113.53604 * 270.81127 * 7 6 5 33 33 H 1.09001 * 113.74828 * 139.93827 * 7 6 5 34 34 H 1.09005 * 113.61539 * 220.09340 * 8 7 6 35 35 H 1.08999 * 113.61901 * 89.18715 * 8 7 6 36 36 H 1.09001 * 109.47539 * 95.24398 * 10 9 3 37 37 H 1.08996 * 109.47043 * 215.25131 * 10 9 3 38 38 H 1.09004 * 109.47134 * 335.24792 * 10 9 3 39 39 H 0.96998 * 119.99867 * 359.97438 * 15 13 11 40 40 H 0.96991 * 119.99945 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 6 4.0641 1.2620 1.5686 7 6 5.1394 2.3149 1.2444 8 6 4.1773 2.8542 0.1728 9 7 1.6524 2.0975 -1.2518 10 6 2.1138 1.5589 -2.5337 11 6 0.8712 3.1954 -1.2242 12 8 0.5688 3.6988 -0.1612 13 6 0.3793 3.7910 -2.4964 14 8 0.5899 3.2278 -3.5521 15 7 -0.2997 4.9551 -2.4773 16 6 -0.7500 5.4995 -3.6407 17 1 -0.5628 4.9988 -4.5792 18 6 -1.4528 6.7054 -3.6210 19 7 -1.8858 7.2296 -4.7409 20 14 -1.7759 7.5716 -1.9978 21 1 -0.6586 8.5046 -1.7037 22 1 -3.0469 8.3343 -2.0883 23 1 -1.8791 6.5647 -0.9113 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 4.0494 0.7815 -0.5912 30 1 3.3478 1.5874 2.3230 31 1 4.4693 0.2700 1.7684 32 1 6.0555 1.8896 0.8344 33 1 5.3255 3.0170 2.0571 34 1 4.6737 3.1458 -0.7528 35 1 3.4919 3.6158 0.5448 36 1 1.3490 0.9022 -2.9484 37 1 2.3023 2.3795 -3.2259 38 1 3.0335 0.9942 -2.3807 39 1 -0.4681 5.4045 -1.6344 40 1 -2.3745 8.0673 -4.7271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325229267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:21 Heat of formation + Delta-G solvation = -68.410256 kcal Electronic energy + Delta-G solvation = -21485.082114 eV Core-core repulsion = 18299.986032 eV Total energy + Delta-G solvation = -3185.096082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79902 -40.17015 -38.90551 -37.17603 -36.11254 -34.06039 -33.61379 -29.37197 -28.22358 -27.45712 -26.47751 -24.89415 -23.98892 -21.68070 -21.13540 -20.26630 -20.04005 -18.28042 -18.00433 -17.23337 -16.96844 -16.37869 -16.02029 -15.84738 -15.28048 -15.24392 -14.79807 -14.46310 -14.39217 -14.10275 -13.80537 -13.34615 -13.30827 -13.21274 -13.02609 -12.90037 -12.56962 -12.54943 -12.31699 -12.14810 -11.97668 -11.71511 -11.69210 -11.47406 -11.21353 -11.05538 -10.46647 -10.04404 -9.63640 -8.62447 -6.15376 0.54963 1.26547 1.30188 1.36146 1.66767 2.08668 2.28034 2.90090 3.06927 3.56987 3.72347 3.77983 3.79073 3.99963 4.14541 4.19712 4.26177 4.33712 4.53763 4.66774 4.77188 4.87173 4.88561 4.93396 4.94436 5.03297 5.06733 5.10899 5.12445 5.20643 5.27060 5.34060 5.36920 5.56683 5.63487 5.75407 6.07574 6.30986 6.58660 6.88985 7.16368 7.63712 8.52285 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.005255 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.283031 B = 5326.522462 C = 5625.539133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.141 3.859 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.133 4.133 8 C -0.146 4.146 9 N -0.569 5.569 10 C 0.088 3.912 11 C 0.516 3.484 12 O -0.567 6.567 13 C 0.407 3.593 14 O -0.588 6.588 15 N -0.538 5.538 16 C -0.336 4.336 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.894 5.894 20 Si 0.944 3.056 21 H -0.252 1.252 22 H -0.256 1.256 23 H -0.252 1.252 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.390 0.610 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -12.912 13.925 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.039 3.961 4 H 0.099 0.901 5 C -0.134 4.134 6 C -0.157 4.157 7 C -0.170 4.170 8 C -0.183 4.183 9 N -0.301 5.301 10 C -0.053 4.053 11 C 0.300 3.700 12 O -0.447 6.447 13 C 0.192 3.808 14 O -0.474 6.474 15 N -0.176 5.176 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.193 4.193 19 N -0.531 5.531 20 Si 0.764 3.236 21 H -0.176 1.176 22 H -0.180 1.180 23 H -0.176 1.176 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.226 0.774 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.356 -12.875 13.652 21.934 hybrid contribution -0.756 1.088 0.138 1.332 sum 10.600 -11.787 13.790 21.011 Atomic orbital electron populations 1.21730 0.96738 1.01959 1.00455 1.21850 0.95355 0.94447 1.04344 1.21526 0.95240 0.94045 0.85277 0.90102 1.22953 0.92719 0.97948 0.99805 1.22874 0.97930 1.00412 0.94511 1.22827 0.97430 0.98552 0.98221 1.22861 0.99023 0.96674 0.99786 1.47648 1.47234 1.25860 1.09322 1.21992 0.99855 1.00118 0.83383 1.19982 0.79587 0.81838 0.88548 1.90642 1.59479 1.62297 1.32285 1.19700 0.86884 0.84286 0.89931 1.90573 1.61530 1.62404 1.32937 1.41731 1.46885 1.19944 1.09085 1.19149 1.34569 1.06129 0.86711 0.90291 1.26013 0.94953 0.96462 1.01847 1.69540 1.34766 1.20038 1.28790 0.85648 0.80212 0.79710 0.78011 1.17619 1.18001 1.17599 0.90799 0.93537 0.95672 0.87980 0.90307 0.87116 0.90435 0.88973 0.88728 0.91436 0.92395 0.92751 0.92939 0.91376 0.88514 0.77416 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.80 71.98 0.71 -2.86 16 2 C -0.12 -2.34 5.35 30.59 0.16 -2.18 16 3 C 0.14 3.48 1.77 44.99 0.08 3.56 16 4 H 0.08 2.36 6.75 -2.39 -0.02 2.35 16 5 C -0.12 -2.20 2.69 -10.27 -0.03 -2.23 16 6 C -0.12 -1.78 7.58 31.18 0.24 -1.55 16 7 C -0.13 -2.16 8.09 31.18 0.25 -1.91 16 8 C -0.15 -3.33 7.43 31.12 0.23 -3.10 16 9 N -0.57 -18.41 2.00 -824.85 -1.65 -20.07 16 10 C 0.09 2.63 8.16 127.77 1.04 3.67 16 11 C 0.52 21.62 7.71 87.08 0.67 22.29 16 12 O -0.57 -25.00 15.82 -3.53 -0.06 -25.06 16 13 C 0.41 20.27 7.63 87.08 0.66 20.94 16 14 O -0.59 -31.29 12.93 -3.71 -0.05 -31.33 16 15 N -0.54 -28.14 5.05 -308.87 -1.56 -29.70 16 16 C -0.34 -19.70 10.16 84.36 0.86 -18.84 16 17 H 0.08 5.27 7.37 -2.91 -0.02 5.25 16 18 C 0.01 0.66 5.51 85.14 0.47 1.13 16 19 N -0.89 -51.46 13.94 21.77 0.30 -51.15 16 20 Si 0.94 40.37 27.74 68.60 1.90 42.27 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.25 -10.36 6.53 99.48 0.65 -9.71 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.02 0.74 7.75 -2.39 -0.02 0.72 16 27 H 0.10 1.42 8.09 -2.38 -0.02 1.40 16 28 H 0.08 1.36 7.51 -2.39 -0.02 1.34 16 29 H 0.11 1.73 7.25 -2.38 -0.02 1.72 16 30 H 0.08 1.26 7.99 -2.39 -0.02 1.24 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 36 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 2.48 5.95 -2.39 -0.01 2.46 16 38 H 0.10 2.02 6.73 -2.39 -0.02 2.01 16 39 H 0.39 18.96 5.23 -92.71 -0.49 18.47 16 40 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 Total: -1.00 -68.21 324.07 4.73 -63.48 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.49 Total: 32.64 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.35 Total: 18.92 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -2.91 Total: -100.92 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.10 Total: -56.39 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.90 Total: 42.27 kcal Total: -68.21 4.73 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325229267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.928 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds