Wall clock time and date at job start Mon Mar 30 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 C 1.52995 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.53620 * 303.62697 * 4 3 2 6 6 N 1.47311 * 110.59758 * 66.45585 * 4 3 2 7 7 C 1.34532 * 106.62117 * 118.68247 * 6 4 3 8 8 O 1.21541 * 123.76801 * 179.97438 * 7 6 4 9 9 N 1.33788 * 112.45553 * 0.02562 * 7 6 4 10 10 C 1.46500 * 124.17730 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47299 * 90.01712 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.34769 * 111.64320 * 0.22739 * 9 7 6 23 23 O 1.21238 * 127.15265 * 179.73737 * 22 9 7 24 24 H 1.09003 * 109.47087 * 60.00126 * 1 2 3 25 25 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46965 * 300.00076 * 1 2 3 27 27 H 1.09005 * 109.46659 * 239.99912 * 2 1 3 28 28 H 1.08998 * 109.47030 * 120.00344 * 2 1 3 29 29 H 1.08997 * 109.47262 * 60.00106 * 3 2 1 30 30 H 1.08998 * 109.47448 * 300.00088 * 3 2 1 31 31 H 0.97004 * 126.69153 * 298.64754 * 6 4 3 32 32 H 1.09001 * 109.46596 * 330.01942 * 10 9 7 33 33 H 1.09002 * 109.47129 * 210.02297 * 10 9 7 34 34 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 35 35 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 36 36 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 37 37 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 40 40 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9520 0.8773 0.8508 6 7 4.0888 0.8914 -1.2632 7 6 4.8035 1.8712 -1.8455 8 8 5.3739 1.7490 -2.9118 9 7 4.8172 2.9946 -1.1191 10 6 5.5177 4.2200 -1.5116 11 6 4.5774 5.1042 -2.3331 12 6 5.3089 6.3841 -2.7425 13 6 4.3684 7.2687 -3.5634 14 6 5.0890 8.5291 -3.9672 15 1 6.1153 8.6837 -3.6685 16 6 4.4385 9.4846 -4.7188 17 7 3.1888 9.2961 -5.0829 18 14 5.3315 11.0473 -5.2187 19 1 6.5216 10.6976 -6.0351 20 1 4.4191 11.9051 -6.0166 21 1 5.7640 11.7810 -4.0022 22 6 4.1115 2.8581 0.0209 23 8 3.9431 3.6943 0.8824 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9437 -0.0035 -1.6081 32 1 6.3910 3.9630 -2.1112 33 1 5.8356 4.7586 -0.6189 34 1 3.7041 5.3611 -1.7335 35 1 4.2595 4.5656 -3.2258 36 1 5.6264 6.9226 -1.8495 37 1 6.1824 6.1276 -3.3419 38 1 4.0505 6.7304 -4.4564 39 1 3.4951 7.5253 -2.9638 40 1 2.7313 9.9681 -5.6120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385180316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:36 Heat of formation + Delta-G solvation = -100.823814 kcal Electronic energy + Delta-G solvation = -20309.966843 eV Core-core repulsion = 17123.465204 eV Total energy + Delta-G solvation = -3186.501639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48774 -39.71408 -37.90903 -37.29681 -36.08643 -34.92366 -33.80773 -30.67275 -30.15489 -27.29345 -25.77888 -24.33994 -23.49264 -22.12265 -21.91853 -21.25511 -19.07811 -18.50259 -18.00750 -17.61482 -16.69464 -16.62486 -16.42453 -16.21184 -15.95093 -15.31740 -15.10262 -14.83365 -14.49677 -14.12214 -13.82380 -13.80780 -13.64155 -12.87688 -12.84365 -12.62902 -12.49278 -12.44010 -12.28427 -12.13556 -11.89899 -11.54383 -11.51267 -11.49065 -11.29073 -11.15379 -10.76340 -10.56428 -10.44893 -8.20991 -6.32874 0.54336 1.16560 1.39231 1.43140 1.50964 1.91605 2.17078 2.40594 2.91345 3.11827 3.57573 3.75478 3.92502 3.93417 4.16016 4.17643 4.26405 4.33657 4.39379 4.60613 4.62171 4.74001 4.76424 4.80718 4.92885 4.99730 5.04743 5.18151 5.23547 5.25763 5.33383 5.47209 5.50294 5.71441 5.80459 5.83359 6.02851 6.22674 6.33834 6.84093 7.08009 7.36535 8.91023 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.003389 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.491943 B = 8259.488505 C = 8600.353537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.108 3.892 5 H 0.168 0.832 6 N -0.702 5.702 7 C 0.697 3.303 8 O -0.582 6.582 9 N -0.580 5.580 10 C 0.123 3.877 11 C -0.119 4.119 12 C -0.094 4.094 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.064 0.936 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.517 3.483 23 O -0.494 6.494 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.452 0.548 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.059 0.941 38 H -0.013 1.013 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -22.683 13.939 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.157 4.157 4 C 0.000 4.000 5 H 0.185 0.815 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.458 6.458 9 N -0.325 5.325 10 C 0.002 3.998 11 C -0.158 4.158 12 C -0.132 4.132 13 C -0.013 4.013 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.190 1.190 22 C 0.305 3.695 23 O -0.365 6.365 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.300 0.700 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.346 -22.140 13.754 26.100 hybrid contribution -0.032 0.820 -0.861 1.190 sum -1.378 -21.321 12.893 24.954 Atomic orbital electron populations 1.21786 0.95594 1.02317 1.01750 1.21494 0.96185 0.93923 1.03697 1.21868 0.89453 1.00360 1.03991 1.22300 0.97637 0.90061 0.90013 0.81524 1.45483 1.53291 1.15317 1.22650 1.16070 0.80096 0.81081 0.83033 1.91007 1.50367 1.82410 1.22017 1.46566 1.49441 1.14418 1.22104 1.21740 0.95064 0.81953 1.01017 1.21788 0.98663 0.96254 0.99070 1.21352 0.98349 0.93983 0.99523 1.18999 0.94515 0.94018 0.93812 1.21709 0.99250 1.04121 1.33289 0.91802 1.26055 0.95725 1.02426 0.95927 1.70110 1.12318 1.36594 1.38570 0.85449 0.78326 0.78352 0.78623 1.19075 1.20809 1.18963 1.21542 0.76811 0.91006 0.80096 1.90807 1.57636 1.48881 1.39213 0.93674 0.91583 0.92431 0.91028 0.89314 0.88824 0.92329 0.70012 0.88246 0.87667 0.92923 0.93235 0.92002 0.92272 0.99508 0.99297 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -0.77 5.84 30.59 0.18 -0.59 16 3 C -0.12 -1.35 5.00 30.59 0.15 -1.20 16 4 C 0.11 1.36 3.66 44.37 0.16 1.52 16 5 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 6 N -0.70 -10.23 5.97 -459.62 -2.74 -12.97 16 7 C 0.70 17.71 8.62 179.44 1.55 19.26 16 8 O -0.58 -19.67 17.48 -3.84 -0.07 -19.74 16 9 N -0.58 -15.15 2.60 -773.11 -2.01 -17.16 16 10 C 0.12 3.60 5.70 86.38 0.49 4.09 16 11 C -0.12 -4.36 5.54 30.59 0.17 -4.19 16 12 C -0.09 -4.00 5.15 30.59 0.16 -3.84 16 13 C 0.02 1.31 4.97 29.85 0.15 1.46 16 14 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 15 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 18 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.52 11.81 7.67 87.94 0.67 12.49 16 23 O -0.49 -14.26 17.75 -2.90 -0.05 -14.31 16 24 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.39 7.43 -2.38 -0.02 0.37 16 28 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.45 4.04 8.42 -92.70 -0.78 3.25 16 32 H 0.10 2.83 7.86 -2.39 -0.02 2.82 16 33 H 0.11 2.82 8.00 -2.39 -0.02 2.80 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.79 338.20 2.77 -74.02 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 0.24 Total: 4.76 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.09 Total: -3.40 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -4.47 Total: -88.75 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.12 Total: -34.04 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.79 2.77 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385180316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.803 kcal (2) G-P(sol) polarization free energy of solvation -76.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds