Wall clock time and date at job start Mon Mar 30 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.06565 * 2 1 4 4 C 1.50782 * 109.92152 * 121.50107 * 2 1 3 5 5 O 1.21282 * 125.42353 * 299.35375 * 4 2 1 6 6 N 1.34302 * 109.14766 * 119.63290 * 4 2 1 7 7 C 1.46502 * 124.85018 * 179.76024 * 6 4 2 8 8 C 1.46218 * 110.29187 * 359.74139 * 6 4 2 9 9 N 1.46803 * 108.06052 * 359.97438 * 8 6 4 10 10 C 1.34777 * 127.03150 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99633 * 180.02562 * 10 9 8 12 12 C 1.50701 * 120.00115 * 0.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 H 1.09004 * 109.46806 * 181.43785 * 1 2 3 25 25 H 1.08994 * 109.47013 * 301.43579 * 1 2 3 26 26 H 1.08994 * 109.47111 * 61.43964 * 1 2 3 27 27 H 1.09001 * 109.47111 * 269.97869 * 7 6 4 28 28 H 1.08995 * 109.47151 * 29.97985 * 7 6 4 29 29 H 1.08997 * 109.46711 * 149.97744 * 7 6 4 30 30 H 1.08996 * 109.75352 * 240.33951 * 8 6 4 31 31 H 1.09002 * 109.75143 * 119.65699 * 8 6 4 32 32 H 1.09002 * 109.47060 * 60.00000 * 12 10 9 33 33 H 1.09001 * 109.46927 * 300.00196 * 12 10 9 34 34 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 35 35 H 1.09001 * 109.46832 * 300.00193 * 13 12 10 36 36 H 1.09002 * 109.47103 * 59.99753 * 14 13 12 37 37 H 1.08998 * 109.46862 * 300.00565 * 14 13 12 38 38 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 39 39 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0438 -0.7407 1.2087 5 8 1.8278 -0.4378 2.3630 6 7 2.7836 -1.7857 0.8033 7 6 3.4526 -2.7346 1.6969 8 6 2.8256 -1.8412 -0.6572 9 7 2.0332 -0.7205 -1.1781 10 6 1.8165 -0.4120 -2.4721 11 8 1.1366 0.5501 -2.7604 12 6 2.4191 -1.2623 -3.5607 13 6 2.0227 -0.6984 -4.9266 14 6 2.6339 -1.5620 -6.0317 15 6 2.2370 -0.9985 -7.3977 16 6 2.8396 -1.8488 -8.4862 17 1 3.4447 -2.7057 -8.2295 18 6 2.6175 -1.5334 -9.8100 19 7 1.8802 -0.4902 -10.1226 20 14 3.3637 -2.5878 -11.1592 21 1 4.1444 -3.6938 -10.5486 22 1 2.2797 -3.1541 -12.0016 23 1 4.2600 -1.7543 -12.0002 24 1 -0.3633 -1.0274 0.0258 25 1 -0.3633 0.5359 0.8768 26 1 -0.3633 0.4913 -0.9026 27 1 4.4577 -2.3767 1.9201 28 1 2.8847 -2.8239 2.6229 29 1 3.5130 -3.7091 1.2124 30 1 2.4012 -2.7839 -1.0024 31 1 3.8568 -1.7543 -0.9996 32 1 2.0516 -2.2844 -3.4686 33 1 3.5050 -1.2567 -3.4669 34 1 2.3905 0.3236 -5.0184 35 1 0.9368 -0.7036 -5.0206 36 1 2.2658 -2.5838 -5.9398 37 1 3.7198 -1.5573 -5.9378 38 1 2.6048 0.0235 -7.4899 39 1 1.1511 -1.0036 -7.4912 40 1 1.7243 -0.2681 -11.0538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592729718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:34 Heat of formation + Delta-G solvation = -71.429221 kcal Electronic energy + Delta-G solvation = -20134.271103 eV Core-core repulsion = 16949.044109 eV Total energy + Delta-G solvation = -3185.226994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47057 -39.30605 -37.05877 -35.09231 -34.63691 -32.76276 -31.62708 -29.58185 -28.48931 -26.25068 -25.75059 -23.86453 -22.20169 -20.49156 -20.07300 -19.65327 -17.56162 -17.08218 -16.23820 -16.15976 -15.90578 -15.68429 -15.65526 -14.48542 -14.44648 -14.33035 -14.00374 -13.53221 -13.33947 -12.84440 -12.70635 -12.66761 -12.52147 -12.21186 -11.94008 -11.75422 -11.62906 -11.03053 -10.60395 -10.52579 -10.47545 -10.46402 -9.93348 -9.71816 -9.64611 -9.27352 -9.00735 -8.95239 -8.33070 -5.97611 -4.00217 2.00729 2.11190 2.45465 2.54123 3.31488 3.38888 3.42375 3.72441 4.21710 4.46996 4.61136 4.67025 4.71606 4.79600 4.86770 4.99386 5.13942 5.21051 5.21942 5.25936 5.38013 5.49282 5.56480 5.68253 5.86071 5.92473 6.06070 6.22179 6.46213 6.49367 6.77563 6.94028 7.07626 7.16763 7.55704 7.71635 7.86758 7.93314 8.03618 8.45103 9.07758 9.63713 11.13732 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.002942 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.113723 B = 9516.290874 C =10088.118056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 H 0.112 0.888 4 C 0.523 3.477 5 O -0.512 6.512 6 N -0.631 5.631 7 C 0.102 3.898 8 C 0.330 3.670 9 N -0.633 5.633 10 C 0.544 3.456 11 O -0.514 6.514 12 C -0.133 4.133 13 C -0.105 4.105 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -4.881 23.173 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 H 0.129 0.871 4 C 0.310 3.690 5 O -0.386 6.386 6 N -0.368 5.368 7 C -0.039 4.039 8 C 0.121 3.879 9 N -0.373 5.373 10 C 0.335 3.665 11 O -0.387 6.387 12 C -0.173 4.173 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.181 -4.131 23.415 23.876 hybrid contribution 0.527 -0.663 -0.781 1.152 sum 2.708 -4.794 22.634 23.294 Atomic orbital electron populations 1.21947 0.91475 1.03090 1.04444 1.21458 0.97460 0.97783 0.83675 0.87068 1.20578 0.77733 0.80750 0.89976 1.90770 1.59322 1.69084 1.19460 1.48273 1.51809 1.29724 1.06957 1.21592 0.97253 0.91518 0.93565 1.21382 0.96949 0.91021 0.78538 1.48576 1.53287 1.29964 1.05507 1.20811 0.80055 0.85464 0.80213 1.90743 1.38380 1.28658 1.80958 1.21853 1.01928 0.99582 0.93957 1.21496 1.01739 1.00254 0.90793 1.21645 0.99060 0.97983 0.96058 1.19100 0.96821 0.96293 0.89558 1.21313 1.31283 1.12177 0.91095 0.92697 1.25044 0.95361 0.95285 0.98896 1.69982 1.38855 1.26719 1.17861 0.86561 0.79012 0.80456 0.82099 1.19776 1.21053 1.21048 0.92188 0.90576 0.89624 0.91863 0.90103 0.90256 0.89886 0.89808 0.88772 0.88772 0.91591 0.91597 0.93407 0.93401 0.96561 0.96560 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.29 37.16 0.35 -1.22 16 2 C 0.10 1.08 3.63 -68.78 -0.25 0.83 16 3 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.52 5.59 7.42 -11.16 -0.08 5.50 16 5 O -0.51 -7.01 17.67 5.56 0.10 -6.91 16 6 N -0.63 -4.92 3.33 -185.49 -0.62 -5.54 16 7 C 0.10 0.50 11.01 59.85 0.66 1.16 16 8 C 0.33 2.25 7.21 -63.73 -0.46 1.79 16 9 N -0.63 -6.38 3.10 -170.60 -0.53 -6.91 16 10 C 0.54 6.92 7.69 -10.98 -0.08 6.83 16 11 O -0.51 -8.57 15.12 5.56 0.08 -8.48 16 12 C -0.13 -1.56 4.98 -27.88 -0.14 -1.69 16 13 C -0.10 -1.73 4.50 -26.74 -0.12 -1.85 16 14 C -0.11 -2.13 5.15 -26.74 -0.14 -2.27 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.02 6.91 -51.93 -0.36 0.66 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.46 7.98 -51.93 -0.41 0.04 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -34.76 336.78 -7.64 -42.40 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -6.65 Total: -5.70 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.82 Total: -4.06 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.41 Total: -38.86 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.18 Total: -15.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.76 -7.64 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592729718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.029 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds