Wall clock time and date at job start Mon Mar 30 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.06565 * 2 1 4 4 C 1.50782 * 109.92152 * 121.50107 * 2 1 3 5 5 O 1.21282 * 125.42353 * 299.35375 * 4 2 1 6 6 N 1.34302 * 109.14766 * 119.63290 * 4 2 1 7 7 C 1.46502 * 124.85018 * 179.76024 * 6 4 2 8 8 C 1.46218 * 110.29187 * 359.74139 * 6 4 2 9 9 N 1.46803 * 108.06052 * 359.97438 * 8 6 4 10 10 C 1.34777 * 127.03150 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99633 * 180.02562 * 10 9 8 12 12 C 1.50701 * 120.00115 * 0.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 H 1.09004 * 109.46806 * 181.43785 * 1 2 3 25 25 H 1.08994 * 109.47013 * 301.43579 * 1 2 3 26 26 H 1.08994 * 109.47111 * 61.43964 * 1 2 3 27 27 H 1.09001 * 109.47111 * 269.97869 * 7 6 4 28 28 H 1.08995 * 109.47151 * 29.97985 * 7 6 4 29 29 H 1.08997 * 109.46711 * 149.97744 * 7 6 4 30 30 H 1.08996 * 109.75352 * 240.33951 * 8 6 4 31 31 H 1.09002 * 109.75143 * 119.65699 * 8 6 4 32 32 H 1.09002 * 109.47060 * 60.00000 * 12 10 9 33 33 H 1.09001 * 109.46927 * 300.00196 * 12 10 9 34 34 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 35 35 H 1.09001 * 109.46832 * 300.00193 * 13 12 10 36 36 H 1.09002 * 109.47103 * 59.99753 * 14 13 12 37 37 H 1.08998 * 109.46862 * 300.00565 * 14 13 12 38 38 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 39 39 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0438 -0.7407 1.2087 5 8 1.8278 -0.4378 2.3630 6 7 2.7836 -1.7857 0.8033 7 6 3.4526 -2.7346 1.6969 8 6 2.8256 -1.8412 -0.6572 9 7 2.0332 -0.7205 -1.1781 10 6 1.8165 -0.4120 -2.4721 11 8 1.1366 0.5501 -2.7604 12 6 2.4191 -1.2623 -3.5607 13 6 2.0227 -0.6984 -4.9266 14 6 2.6339 -1.5620 -6.0317 15 6 2.2370 -0.9985 -7.3977 16 6 2.8396 -1.8488 -8.4862 17 1 3.4447 -2.7057 -8.2295 18 6 2.6175 -1.5334 -9.8100 19 7 1.8802 -0.4902 -10.1226 20 14 3.3637 -2.5878 -11.1592 21 1 4.1444 -3.6938 -10.5486 22 1 2.2797 -3.1541 -12.0016 23 1 4.2600 -1.7543 -12.0002 24 1 -0.3633 -1.0274 0.0258 25 1 -0.3633 0.5359 0.8768 26 1 -0.3633 0.4913 -0.9026 27 1 4.4577 -2.3767 1.9201 28 1 2.8847 -2.8239 2.6229 29 1 3.5130 -3.7091 1.2124 30 1 2.4012 -2.7839 -1.0024 31 1 3.8568 -1.7543 -0.9996 32 1 2.0516 -2.2844 -3.4686 33 1 3.5050 -1.2567 -3.4669 34 1 2.3905 0.3236 -5.0184 35 1 0.9368 -0.7036 -5.0206 36 1 2.2658 -2.5838 -5.9398 37 1 3.7198 -1.5573 -5.9378 38 1 2.6048 0.0235 -7.4899 39 1 1.1511 -1.0036 -7.4912 40 1 1.7243 -0.2681 -11.0538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592729718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:34 Heat of formation + Delta-G solvation = -94.372680 kcal Electronic energy + Delta-G solvation = -20135.266006 eV Core-core repulsion = 16949.044109 eV Total energy + Delta-G solvation = -3186.221897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.25718 -40.27969 -37.93213 -36.62429 -35.43668 -34.61577 -32.71778 -31.06952 -29.12515 -27.39406 -26.93779 -24.95079 -23.64848 -21.73549 -21.21691 -20.57605 -18.45919 -18.32910 -17.84011 -16.95022 -16.74591 -16.69017 -16.55257 -16.40731 -15.59569 -15.11398 -14.90456 -14.52614 -14.46225 -14.06746 -13.69674 -13.60551 -13.38951 -13.28264 -13.24621 -13.18149 -12.83702 -12.75159 -12.29303 -12.10930 -12.10347 -11.43116 -11.32441 -11.27192 -11.09418 -10.77118 -10.53041 -10.46427 -9.63350 -8.16450 -6.28068 1.20037 1.41325 1.42953 1.43143 1.50947 1.56521 1.80561 2.43911 2.98627 3.16859 3.42442 3.85615 3.92406 4.04595 4.13652 4.16139 4.32730 4.34911 4.44294 4.61944 4.65047 4.68484 4.73913 4.80842 4.87078 4.89630 4.93024 5.05041 5.22007 5.23457 5.38717 5.42903 5.61315 5.79099 5.83258 5.92495 6.23505 6.28605 6.80508 6.91561 7.00483 7.41762 8.95945 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.002942 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.113723 B = 9516.290874 C =10088.118056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 H 0.104 0.896 4 C 0.522 3.478 5 O -0.550 6.550 6 N -0.623 5.623 7 C 0.096 3.904 8 C 0.321 3.679 9 N -0.628 5.628 10 C 0.545 3.455 11 O -0.566 6.566 12 C -0.120 4.120 13 C -0.098 4.098 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.255 1.255 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.063 0.937 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -7.873 23.729 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 H 0.121 0.879 4 C 0.308 3.692 5 O -0.428 6.428 6 N -0.357 5.357 7 C -0.044 4.044 8 C 0.113 3.887 9 N -0.366 5.366 10 C 0.337 3.663 11 O -0.443 6.443 12 C -0.159 4.159 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.020 4.020 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.179 1.179 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.288 -7.187 23.998 25.415 hybrid contribution -0.112 0.274 -0.934 0.980 sum 4.176 -6.913 23.064 24.437 Atomic orbital electron populations 1.21850 0.91700 1.03169 1.03578 1.21422 0.97410 0.97770 0.84172 0.87868 1.20465 0.78119 0.81444 0.89165 1.90749 1.61059 1.70313 1.20677 1.48422 1.50553 1.28912 1.07855 1.21847 0.97113 0.92332 0.93085 1.21898 0.98278 0.90792 0.77683 1.48439 1.52926 1.30619 1.04631 1.20920 0.79436 0.84861 0.81092 1.90737 1.40791 1.30917 1.81903 1.21729 1.03834 1.00278 0.90094 1.21278 1.00140 0.98972 0.93249 1.21433 1.00118 0.98665 0.93009 1.19074 0.94587 0.94880 0.93478 1.21810 1.31227 1.12632 0.91968 0.91402 1.26080 0.95788 0.96636 1.01973 1.70138 1.40483 1.28781 1.18560 0.85363 0.78178 0.78815 0.78457 1.17895 1.20677 1.20675 0.91653 0.90265 0.91541 0.90839 0.91176 0.87017 0.86824 0.86832 0.85494 0.85523 0.93734 0.93701 0.91791 0.91805 0.99778 0.99757 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.29 71.98 0.67 -2.35 16 2 C 0.10 2.03 3.63 44.18 0.16 2.19 16 3 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.52 10.54 7.42 87.76 0.65 11.19 16 5 O -0.55 -14.98 17.67 -3.04 -0.05 -15.03 16 6 N -0.62 -7.83 3.33 -859.42 -2.86 -10.69 16 7 C 0.10 0.63 11.01 127.77 1.41 2.04 16 8 C 0.32 2.97 7.21 170.95 1.23 4.21 16 9 N -0.63 -11.24 3.10 -812.06 -2.52 -13.76 16 10 C 0.55 13.04 7.69 87.66 0.67 13.71 16 11 O -0.57 -19.26 15.12 -3.03 -0.05 -19.31 16 12 C -0.12 -2.40 4.98 29.85 0.15 -2.25 16 13 C -0.10 -3.19 4.50 30.59 0.14 -3.05 16 14 C -0.09 -3.55 5.15 30.59 0.16 -3.39 16 15 C 0.02 0.90 4.97 29.85 0.15 1.04 16 16 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 18 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 19 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 20 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.66 6.91 -2.39 -0.02 1.64 16 27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.66 7.98 -2.39 -0.02 0.64 16 29 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -79.38 336.78 3.92 -75.46 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.00 Total: 2.15 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.08 Total: -6.71 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -5.09 Total: -82.46 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.10 Total: -34.34 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -79.38 3.92 -75.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592729718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.913 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds