Wall clock time and date at job start Mon Mar 30 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.21155 * 2 1 4 4 C 1.52991 * 109.21352 * 119.33538 * 2 1 3 5 5 N 1.47267 * 108.18671 * 167.06137 * 4 2 1 6 6 C 1.34770 * 121.35486 * 118.76741 * 5 4 2 7 7 O 1.21278 * 119.99920 * 359.71822 * 6 5 4 8 8 C 1.50702 * 119.99934 * 179.71285 * 6 5 4 9 9 C 1.53008 * 109.46944 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46939 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00102 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00146 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99847 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47114 * 89.99784 * 15 13 11 17 17 H 1.48505 * 109.46748 * 209.99313 * 15 13 11 18 18 H 1.48495 * 109.47234 * 329.99534 * 15 13 11 19 19 C 1.47056 * 117.28969 * 298.49440 * 5 4 2 20 20 C 1.50436 * 108.88954 * 42.73872 * 19 5 4 21 21 O 1.21288 * 118.48536 * 167.31022 * 20 19 5 22 22 N 1.33376 * 123.02510 * 347.29390 * 20 19 5 23 23 C 1.46504 * 117.70345 * 184.33973 * 22 20 19 24 24 H 1.08994 * 109.47244 * 179.37689 * 1 2 3 25 25 H 1.08991 * 109.47377 * 299.38150 * 1 2 3 26 26 H 1.09005 * 109.46643 * 59.38060 * 1 2 3 27 27 H 1.09000 * 109.72259 * 47.38596 * 4 2 1 28 28 H 1.08996 * 109.72132 * 286.73258 * 4 2 1 29 29 H 1.08996 * 109.47467 * 300.00373 * 8 6 5 30 30 H 1.08999 * 109.46911 * 60.00776 * 8 6 5 31 31 H 1.09004 * 109.47119 * 300.00125 * 9 8 6 32 32 H 1.08997 * 109.47172 * 59.99948 * 9 8 6 33 33 H 1.08996 * 109.47281 * 300.00130 * 10 9 8 34 34 H 1.09005 * 109.47323 * 60.00150 * 10 9 8 35 35 H 0.96997 * 119.99812 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.56469 * 162.55918 * 19 5 4 37 37 H 1.08994 * 109.56705 * 282.79517 * 19 5 4 38 38 H 1.08996 * 109.47509 * 0.02562 * 23 22 20 39 39 H 1.09008 * 109.46672 * 119.99794 * 23 22 20 40 40 H 1.09000 * 109.47166 * 239.99448 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0335 -0.7078 1.2594 5 7 3.4724 -0.9737 1.0931 6 6 4.3850 -0.4436 1.9313 7 8 4.0276 0.2728 2.8423 8 6 5.8494 -0.7412 1.7367 9 6 6.6635 -0.0227 2.8147 10 6 8.1504 -0.3244 2.6167 11 6 8.9521 0.3827 3.6789 12 1 8.4513 0.9871 4.4207 13 6 10.3251 0.2589 3.7031 14 7 10.9350 -0.4767 2.7995 15 14 11.3190 1.1359 5.0193 16 1 11.4667 0.2491 6.2013 17 1 12.6620 1.4734 4.4828 18 1 10.6185 2.3824 5.4202 19 6 3.8725 -1.8461 -0.0210 20 6 3.0783 -1.4714 -1.2424 21 8 3.4257 -1.9144 -2.3167 22 7 2.0095 -0.6748 -1.1984 23 6 1.2653 -0.4641 -2.4426 24 1 -0.3633 -1.0275 -0.0112 25 1 -0.3633 0.5041 0.8954 26 1 -0.3633 0.5235 -0.8844 27 1 1.4986 -1.6482 1.3916 28 1 1.8756 -0.0690 2.1283 29 1 6.0151 -1.8158 1.8125 30 1 6.1630 -0.3938 0.7523 31 1 6.4979 1.0520 2.7392 32 1 6.3498 -0.3704 3.7990 33 1 8.3163 -1.3990 2.6919 34 1 8.4638 0.0237 1.6324 35 1 11.9009 -0.5641 2.8167 36 1 4.9357 -1.7161 -0.2228 37 1 3.6750 -2.8857 0.2403 38 1 1.7364 -1.0279 -3.2477 39 1 0.2379 -0.8051 -2.3136 40 1 1.2673 0.5970 -2.6920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594355627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:50 Heat of formation + Delta-G solvation = -97.377700 kcal Electronic energy + Delta-G solvation = -20625.730907 eV Core-core repulsion = 17439.378703 eV Total energy + Delta-G solvation = -3186.352205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01486 -40.46150 -38.04247 -36.26145 -36.13564 -34.06090 -32.67368 -30.23374 -29.55826 -28.33391 -26.48385 -25.11096 -23.64491 -22.23807 -21.00789 -19.49701 -18.69213 -18.38942 -18.13576 -17.12456 -17.02912 -16.73467 -16.46670 -16.38991 -15.38038 -15.24571 -14.67637 -14.40284 -14.22829 -14.14053 -13.81001 -13.63637 -13.24827 -13.13931 -13.03740 -12.87298 -12.64728 -12.53128 -12.49741 -12.36621 -12.27150 -11.57746 -11.53880 -11.40035 -11.22637 -10.77917 -10.53749 -9.94557 -9.76030 -8.19514 -6.29585 1.37318 1.40357 1.41458 1.48807 1.52875 1.61688 1.98888 2.42175 3.13638 3.25359 3.43064 3.64034 3.92868 4.03658 4.09297 4.16042 4.23739 4.32327 4.47685 4.51724 4.58592 4.67663 4.75444 4.83922 4.87001 4.94271 5.00196 5.07113 5.14194 5.20386 5.22153 5.42374 5.54463 5.75505 5.86676 6.06166 6.25537 6.28399 6.86150 6.92290 7.03177 7.39169 8.92025 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035102 B = 0.003490 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.479971 B = 8021.953836 C = 8556.405956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.071 0.929 4 C 0.097 3.903 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.567 6.567 8 C -0.134 4.134 9 C -0.081 4.081 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.053 0.947 13 C 0.002 3.998 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.097 3.903 20 C 0.506 3.494 21 O -0.583 6.583 22 N -0.598 5.598 23 C 0.064 3.936 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.002 0.998 34 H -0.002 1.002 35 H 0.264 0.736 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.334 -2.120 -8.110 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.089 0.911 4 C -0.025 4.025 5 N -0.355 5.355 6 C 0.318 3.682 7 O -0.445 6.445 8 C -0.174 4.174 9 C -0.119 4.119 10 C -0.012 4.012 11 C -0.585 4.585 12 H 0.071 0.929 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.028 4.028 20 C 0.294 3.706 21 O -0.463 6.463 22 N -0.330 5.330 23 C -0.078 4.078 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.180 -2.002 -8.204 25.613 hybrid contribution 0.958 0.405 0.477 1.144 sum -23.222 -1.596 -7.727 24.526 Atomic orbital electron populations 1.22116 0.90559 1.03973 1.04602 1.21469 0.97296 0.95954 0.83005 0.91130 1.22224 0.79319 1.02732 0.98256 1.48262 1.07456 1.49823 1.29952 1.20958 0.88722 0.78085 0.80432 1.90668 1.81959 1.38635 1.33287 1.21761 0.89708 1.03993 1.01932 1.21161 0.94822 0.98809 0.97095 1.19027 0.91164 0.95574 0.95476 1.21694 0.92586 1.30182 1.14008 0.92873 1.25920 0.99186 0.96174 0.98296 1.70071 1.09668 1.40913 1.36359 0.85493 0.77758 0.79058 0.79032 1.19662 1.20485 1.19164 1.22048 1.01451 0.97055 0.82231 1.20523 0.81022 0.78315 0.90723 1.90740 1.69014 1.55858 1.30720 1.47389 1.27672 1.46324 1.11643 1.21936 0.97222 1.02562 0.86058 0.90861 0.89324 0.90260 0.88020 0.87631 0.87018 0.87996 0.94011 0.93567 0.97964 0.98316 0.92699 0.85659 0.84995 0.90965 0.89209 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.26 71.98 0.59 -0.48 16 2 C 0.13 1.74 3.56 45.15 0.16 1.90 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C 0.10 1.57 5.83 86.23 0.50 2.07 16 5 N -0.62 -13.53 2.98 -823.29 -2.45 -15.98 16 6 C 0.53 15.86 7.72 87.66 0.68 16.53 16 7 O -0.57 -21.15 15.46 -3.02 -0.05 -21.20 16 8 C -0.13 -4.29 4.15 29.85 0.12 -4.17 16 9 C -0.08 -3.48 4.44 30.60 0.14 -3.35 16 10 C 0.02 1.30 4.97 29.85 0.15 1.45 16 11 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 12 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 13 C 0.00 0.12 5.46 84.66 0.46 0.59 16 14 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 15 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 C 0.10 1.86 6.40 85.44 0.55 2.40 16 20 C 0.51 11.27 7.58 87.79 0.67 11.94 16 21 O -0.58 -17.12 15.97 -3.05 -0.05 -17.17 16 22 N -0.60 -10.37 3.12 -827.00 -2.58 -12.95 16 23 C 0.06 0.88 9.36 127.77 1.20 2.08 16 24 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 0.42 6.90 -2.38 -0.02 0.41 16 27 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.11 1.95 7.06 -2.39 -0.02 1.93 16 29 H 0.11 3.11 8.13 -2.39 -0.02 3.09 16 30 H 0.10 3.02 7.56 -2.39 -0.02 3.00 16 31 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.13 2.45 6.27 -2.39 -0.01 2.44 16 37 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.33 6.59 -2.39 -0.02 1.31 16 39 H 0.09 0.76 6.90 -2.38 -0.02 0.75 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -76.02 325.26 3.65 -72.37 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.02 Total: 5.00 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.45 Total: -0.83 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.75 Total: -85.34 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.10 Total: -38.37 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.02 3.65 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594355627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.008 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds