Wall clock time and date at job start Mon Mar 30 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.21139 * 2 1 4 4 C 1.52508 * 109.26528 * 240.72960 * 2 1 3 5 5 N 1.47266 * 108.44427 * 193.08097 * 4 2 1 6 6 C 1.34769 * 121.35272 * 241.51960 * 5 4 2 7 7 O 1.21281 * 120.00094 * 359.71291 * 6 5 4 8 8 C 1.50709 * 120.00152 * 179.71276 * 6 5 4 9 9 C 1.52996 * 109.47079 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46683 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47426 * 119.99743 * 15 13 11 18 18 H 1.48501 * 109.46833 * 239.99986 * 15 13 11 19 19 C 1.47053 * 117.29489 * 61.24477 * 5 4 2 20 20 C 1.50448 * 108.88695 * 317.51535 * 19 5 4 21 21 O 1.21278 * 118.48541 * 192.73281 * 20 19 5 22 22 N 1.33373 * 123.02649 * 12.70449 * 20 19 5 23 23 C 1.46492 * 117.70744 * 175.65857 * 22 20 19 24 24 H 1.09001 * 109.47328 * 300.62455 * 1 2 3 25 25 H 1.08994 * 109.47287 * 60.62713 * 1 2 3 26 26 H 1.09003 * 109.47209 * 180.62292 * 1 2 3 27 27 H 1.08996 * 109.60259 * 73.31824 * 4 2 1 28 28 H 1.09004 * 109.58726 * 312.82634 * 4 2 1 29 29 H 1.09000 * 109.46736 * 59.99849 * 8 6 5 30 30 H 1.08994 * 109.47114 * 300.00084 * 8 6 5 31 31 H 1.09000 * 109.47441 * 60.00304 * 9 8 6 32 32 H 1.09002 * 109.47087 * 299.99750 * 9 8 6 33 33 H 1.09001 * 109.47671 * 60.00109 * 10 9 8 34 34 H 1.08998 * 109.47454 * 300.00107 * 10 9 8 35 35 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.56730 * 77.33072 * 19 5 4 37 37 H 1.08998 * 109.56914 * 197.57823 * 19 5 4 38 38 H 1.08998 * 109.47215 * 0.02562 * 23 22 20 39 39 H 1.09007 * 109.47050 * 120.00567 * 23 22 20 40 40 H 1.09002 * 109.47072 * 240.00046 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0331 -0.7039 -1.2559 5 7 3.4714 -0.9752 -1.0933 6 6 4.3845 -0.4413 -1.9284 7 8 4.0273 0.2750 -2.8396 8 6 5.8495 -0.7341 -1.7300 9 6 6.6641 -0.0119 -2.8050 10 6 8.1513 -0.3098 -2.6039 11 6 8.9537 0.4011 -3.6631 12 1 8.4529 1.0045 -4.4057 13 6 10.3275 0.2852 -3.6812 14 7 10.9376 -0.4453 -2.7736 15 14 11.3221 1.1669 -4.9937 16 1 10.4052 1.9174 -5.8887 17 1 12.2672 2.1122 -4.3470 18 1 12.0846 0.1712 -5.7891 19 6 3.8714 -1.8475 0.0210 20 6 3.0777 -1.4719 1.2426 21 8 3.4256 -1.9141 2.3170 22 7 2.0093 -0.6747 1.1986 23 6 1.2656 -0.4632 2.4428 24 1 -0.3634 0.5235 0.8843 25 1 -0.3633 0.5040 -0.8955 26 1 -0.3634 -1.0276 0.0112 27 1 1.8756 -0.0622 -2.1227 28 1 1.4947 -1.6422 -1.3894 29 1 6.0189 -1.8082 -1.8065 30 1 6.1592 -0.3868 -0.7443 31 1 6.4948 1.0622 -2.7288 32 1 6.3543 -0.3597 -3.7905 33 1 8.3204 -1.3839 -2.6803 34 1 8.4615 0.0376 -1.6184 35 1 11.9042 -0.5266 -2.7860 36 1 3.6711 -2.8869 -0.2390 37 1 4.9352 -1.7196 0.2211 38 1 1.7371 -1.0262 3.2482 39 1 1.2683 0.5981 2.6918 40 1 0.2381 -0.8035 2.3143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594355629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:53 Heat of formation + Delta-G solvation = -73.975224 kcal Electronic energy + Delta-G solvation = -20627.719179 eV Core-core repulsion = 17442.381782 eV Total energy + Delta-G solvation = -3185.337397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11855 -39.31909 -37.16183 -35.27790 -34.26028 -32.26126 -31.78446 -28.98144 -28.48444 -27.30378 -25.30451 -23.58043 -22.85446 -20.59613 -19.80542 -18.58117 -17.60068 -17.35134 -16.24696 -16.18279 -16.09388 -15.62873 -15.35345 -14.44199 -14.20947 -14.17860 -13.73179 -13.56164 -13.13005 -12.80156 -12.59081 -12.45930 -12.27975 -12.17694 -11.96269 -11.76332 -11.63336 -11.38316 -10.83196 -10.61027 -10.53891 -10.46948 -9.75232 -9.69723 -9.30066 -9.13239 -9.02179 -8.84079 -8.32239 -5.97423 -3.99008 2.26857 2.46277 2.68911 2.86903 3.33976 3.41325 3.46740 4.04359 4.25081 4.48658 4.52432 4.56843 4.81878 4.85613 5.02965 5.09122 5.13646 5.18540 5.25449 5.38722 5.41874 5.43450 5.58652 5.61562 5.64014 5.68126 5.91530 6.12929 6.23008 6.68763 6.89195 7.05562 7.11797 7.17428 7.70596 7.79107 7.82771 8.02892 8.20205 8.46486 9.08249 9.65102 11.14064 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035031 B = 0.003492 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.103479 B = 8015.394794 C = 8548.662780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.080 0.920 4 C 0.100 3.900 5 N -0.629 5.629 6 C 0.523 3.477 7 O -0.528 6.528 8 C -0.140 4.140 9 C -0.095 4.095 10 C 0.019 3.981 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.098 3.902 20 C 0.510 3.490 21 O -0.545 6.545 22 N -0.601 5.601 23 C 0.066 3.934 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.816 -2.185 8.276 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.098 0.902 4 C -0.023 4.023 5 N -0.366 5.366 6 C 0.313 3.687 7 O -0.403 6.403 8 C -0.180 4.180 9 C -0.133 4.133 10 C -0.018 4.018 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.027 4.027 20 C 0.298 3.702 21 O -0.422 6.422 22 N -0.334 5.334 23 C -0.076 4.076 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.612 -2.070 8.345 24.191 hybrid contribution 0.541 0.425 -0.576 0.897 sum -22.071 -1.645 7.770 23.457 Atomic orbital electron populations 1.22144 0.93313 1.03095 1.03451 1.21310 0.95260 0.97041 0.84316 0.90227 1.21878 0.81060 1.01461 0.97886 1.48367 1.06692 1.50625 1.30961 1.21335 0.88762 0.78203 0.80369 1.90680 1.81521 1.36721 1.31370 1.21932 0.89265 1.03445 1.03352 1.21464 0.96967 0.99065 0.95764 1.19142 0.88409 0.97010 0.97194 1.21296 0.91525 1.29554 1.13228 0.92522 1.25023 0.98020 0.95514 0.95982 1.69973 1.09019 1.40055 1.34596 0.86538 0.80132 0.79534 0.81842 1.19690 1.21048 1.21042 1.21909 1.01589 0.96070 0.83173 1.20366 0.80607 0.78205 0.91036 1.90747 1.67799 1.54124 1.29526 1.47246 1.28356 1.47328 1.10489 1.21812 0.96367 1.02036 0.87397 0.91320 0.90494 0.91655 0.86923 0.90483 0.88999 0.89165 0.92655 0.92580 0.96530 0.96545 0.93103 0.87631 0.85543 0.88999 0.92154 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.25 37.16 0.31 -0.52 16 2 C 0.13 1.00 3.54 -68.64 -0.24 0.76 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.10 0.92 5.80 -3.88 -0.02 0.90 16 5 N -0.63 -7.37 2.99 -174.43 -0.52 -7.89 16 6 C 0.52 8.05 7.72 -10.98 -0.08 7.96 16 7 O -0.53 -9.88 15.46 5.56 0.09 -9.79 16 8 C -0.14 -2.27 4.14 -27.88 -0.12 -2.38 16 9 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.10 1.02 6.41 -5.01 -0.03 0.99 16 20 C 0.51 6.01 7.58 -11.73 -0.09 5.92 16 21 O -0.54 -8.11 15.97 5.56 0.09 -8.02 16 22 N -0.60 -5.77 3.12 -175.37 -0.55 -6.32 16 23 C 0.07 0.52 9.36 59.84 0.56 1.08 16 24 H 0.07 0.31 6.90 -51.93 -0.36 -0.05 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.11 1.13 7.06 -51.93 -0.37 0.76 16 28 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 31 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.13 1.32 6.26 -51.93 -0.33 0.99 16 38 H 0.09 0.88 6.59 -51.93 -0.34 0.54 16 39 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.06 0.36 6.90 -51.93 -0.36 0.01 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -34.83 325.21 -6.99 -41.82 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.33 Total: -4.54 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.39 Total: -0.77 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.33 Total: -40.55 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.83 -6.99 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594355629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.156 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds