Wall clock time and date at job start Mon Mar 30 2020 04:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.53007 * 109.47098 * 240.00636 * 2 1 3 5 5 N 1.46490 * 109.47249 * 59.99599 * 4 2 1 6 6 C 1.34783 * 120.00226 * 180.02562 * 5 4 2 7 7 O 1.21687 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.46369 * 120.00228 * 179.97438 * 6 5 4 9 9 H 1.08001 * 120.00224 * 0.02562 * 8 6 5 10 10 C 1.40051 * 120.00038 * 179.97438 * 8 6 5 11 11 N 1.30665 * 119.99662 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99906 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47285 * 90.00140 * 12 10 8 14 14 H 1.48506 * 109.46890 * 209.99983 * 12 10 8 15 15 H 1.48497 * 109.47402 * 329.99730 * 12 10 8 16 16 C 1.50694 * 109.47388 * 120.00400 * 2 1 3 17 17 O 1.21279 * 120.00136 * 116.12030 * 16 2 1 18 18 N 1.34778 * 120.00134 * 295.84553 * 16 2 1 19 19 C 1.47023 * 125.64479 * 354.35229 * 18 16 2 20 20 C 1.54317 * 107.27682 * 180.96479 * 19 18 16 21 21 C 1.55157 * 102.85933 * 22.52498 * 20 19 18 22 22 C 1.47418 * 125.65236 * 174.65571 * 18 16 2 23 23 H 1.09003 * 109.47247 * 305.63700 * 1 2 3 24 24 H 1.09001 * 109.47346 * 65.63788 * 1 2 3 25 25 H 1.09001 * 109.47063 * 185.63940 * 1 2 3 26 26 H 1.09001 * 109.47568 * 164.10617 * 3 2 1 27 27 H 1.09004 * 109.47698 * 284.10753 * 3 2 1 28 28 H 1.09003 * 109.47208 * 44.10420 * 3 2 1 29 29 H 1.08997 * 109.47018 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46637 * 299.99703 * 4 2 1 31 31 H 0.97002 * 120.00397 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99967 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.88253 * 300.51161 * 19 18 16 34 34 H 1.08999 * 109.88315 * 61.67748 * 19 18 16 35 35 H 1.08996 * 110.92587 * 264.11236 * 20 19 18 36 36 H 1.09000 * 110.59008 * 140.78315 * 20 19 18 37 37 H 1.09002 * 111.00569 * 206.22601 * 21 20 19 38 38 H 1.09004 * 111.00583 * 82.37964 * 21 20 19 39 39 H 1.09004 * 110.36746 * 274.67636 * 22 18 16 40 40 H 1.09004 * 110.36974 * 36.88880 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.5516 -0.0305 -2.4454 6 6 1.8768 -0.4912 -3.6696 7 8 2.5764 -1.4805 -3.7813 8 6 1.3883 0.1986 -4.8647 9 1 0.7677 1.0769 -4.7655 10 6 1.7267 -0.2798 -6.1367 11 7 2.4779 -1.3422 -6.2566 12 14 1.1039 0.6009 -7.6618 13 1 2.0819 1.6426 -8.0660 14 1 0.9389 -0.3783 -8.7661 15 1 -0.2043 1.2382 -7.3659 16 6 2.0323 -0.7105 1.2303 17 8 2.6704 -1.7359 1.1204 18 7 1.7773 -0.2033 2.4527 19 6 1.1273 1.0867 2.7266 20 6 1.0708 1.2551 4.2595 21 6 2.2058 0.3187 4.7519 22 6 2.1094 -0.8473 3.7366 23 1 -0.3634 0.5988 0.8352 24 1 -0.3634 0.4239 -0.9362 25 1 -0.3633 -1.0227 0.1010 26 1 3.0929 1.4556 0.2814 27 1 1.9249 1.8686 -0.9967 28 1 1.4653 2.0310 0.7152 29 1 3.1299 -0.7215 -1.2491 30 1 1.6766 -1.7488 -1.2494 31 1 0.9936 0.7579 -2.3564 32 1 2.7120 -1.6738 -7.1377 33 1 1.7082 1.8958 2.2840 34 1 0.1167 1.0867 2.3182 35 1 0.1066 0.9315 4.6515 36 1 1.2749 2.2886 4.5394 37 1 2.0124 -0.0296 5.7664 38 1 3.1753 0.8130 4.6884 39 1 1.3205 -1.5404 4.0287 40 1 3.0638 -1.3689 3.6637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600489206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:41 Heat of formation + Delta-G solvation = -73.435156 kcal Electronic energy + Delta-G solvation = -21092.741659 eV Core-core repulsion = 17907.427681 eV Total energy + Delta-G solvation = -3185.313978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53358 -37.91525 -37.07225 -35.47953 -32.63028 -32.00634 -31.03157 -29.19068 -27.31581 -26.87342 -25.30079 -24.23382 -21.61381 -21.13561 -19.45779 -18.92107 -17.31554 -16.69274 -16.45375 -15.45333 -15.07680 -14.85397 -14.38892 -14.21707 -13.69904 -13.67288 -13.51175 -13.29877 -13.03799 -12.77659 -12.32305 -12.21776 -11.94238 -11.82067 -11.48879 -11.43040 -11.40195 -11.07965 -11.01360 -10.92479 -10.60306 -10.47776 -10.36670 -10.17588 -9.51953 -8.80580 -8.68257 -7.54288 -7.41317 -6.12866 -4.58775 2.73259 2.90911 3.17029 3.23482 3.26904 4.12879 4.20031 4.29444 4.56483 4.64863 4.65758 4.80815 4.94543 5.03050 5.06835 5.15706 5.29543 5.37010 5.41152 5.51055 5.55682 5.63207 5.73377 5.81429 5.82596 5.86554 5.87654 6.01675 6.16965 6.28232 6.34291 6.62996 6.74727 7.46250 7.47817 7.97998 8.13113 8.25930 8.37879 9.07397 9.60213 10.66650 10.85960 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045568 B = 0.003883 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.315645 B = 7210.060639 C = 7591.975575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.150 4.150 4 C 0.159 3.841 5 N -0.765 5.765 6 C 0.554 3.446 7 O -0.578 6.578 8 C -0.546 4.546 9 H 0.067 0.933 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.908 3.092 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.544 3.456 17 O -0.529 6.529 18 N -0.621 5.621 19 C 0.088 3.912 20 C -0.134 4.134 21 C -0.134 4.134 22 C 0.103 3.897 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.378 0.622 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 8.956 20.443 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.207 4.207 4 C 0.034 3.966 5 N -0.423 5.423 6 C 0.358 3.642 7 O -0.460 6.460 8 C -0.583 4.583 9 H 0.085 0.915 10 C -0.133 4.133 11 N -0.396 5.396 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.190 1.190 16 C 0.332 3.668 17 O -0.404 6.404 18 N -0.357 5.357 19 C -0.035 4.035 20 C -0.172 4.172 21 C -0.172 4.172 22 C -0.019 4.019 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.210 0.790 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.364 7.462 20.078 21.860 hybrid contribution -0.592 0.821 -0.613 1.183 sum -4.956 8.282 19.466 21.727 Atomic orbital electron populations 1.21939 0.92342 1.02688 1.02890 1.20957 0.97608 0.97013 0.93544 1.22122 1.01175 0.93710 1.03711 1.20579 0.98456 0.95233 0.82346 1.46203 1.57926 1.32920 1.05219 1.18218 0.80327 0.84266 0.81391 1.90618 1.41334 1.28198 1.85854 1.20861 1.34161 1.13729 0.89574 0.91503 1.25709 0.93434 0.94123 1.00002 1.70030 1.27038 1.18573 1.24004 0.86383 0.79744 0.79571 0.81074 1.19806 1.20517 1.18965 1.20328 0.78787 0.84625 0.83043 1.90731 1.39029 1.24746 1.85890 1.48439 1.61011 1.21007 1.05286 1.22496 0.98388 0.86375 0.96244 1.22670 0.99485 1.00663 0.94331 1.22781 0.99368 0.96260 0.98762 1.22199 1.01501 0.95523 0.82715 0.92141 0.90527 0.92173 0.92352 0.90399 0.91558 0.92758 0.92565 0.78966 0.92147 0.90310 0.90718 0.90550 0.90018 0.89929 0.90585 0.91649 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.17 37.16 0.30 -1.53 16 2 C -0.09 -1.35 0.50 -155.66 -0.08 -1.43 16 3 C -0.15 -1.91 7.61 37.16 0.28 -1.62 16 4 C 0.16 3.39 3.86 -4.04 -0.02 3.38 16 5 N -0.77 -17.43 4.74 -61.73 -0.29 -17.72 16 6 C 0.55 16.23 7.75 -12.99 -0.10 16.13 16 7 O -0.58 -19.58 15.02 5.20 0.08 -19.50 16 8 C -0.55 -15.62 9.54 -35.63 -0.34 -15.96 16 9 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 10 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 11 N -0.77 -23.60 11.83 55.55 0.66 -22.94 16 12 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.54 8.76 6.51 -10.99 -0.07 8.69 16 17 O -0.53 -10.87 16.21 5.56 0.09 -10.78 16 18 N -0.62 -7.43 3.32 -170.53 -0.57 -8.00 16 19 C 0.09 0.72 5.09 -3.07 -0.02 0.70 16 20 C -0.13 -0.78 6.95 -24.90 -0.17 -0.95 16 21 C -0.13 -0.88 7.08 -24.58 -0.17 -1.06 16 22 C 0.10 1.04 6.94 -2.53 -0.02 1.02 16 23 H 0.06 0.60 5.13 -51.93 -0.27 0.33 16 24 H 0.08 1.01 6.72 -51.93 -0.35 0.66 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 27 H 0.08 1.05 6.56 -51.93 -0.34 0.71 16 28 H 0.07 0.62 4.98 -51.93 -0.26 0.36 16 29 H 0.05 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 31 H 0.38 7.31 6.20 -40.82 -0.25 7.06 16 32 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 33 H 0.08 0.61 5.71 -51.93 -0.30 0.32 16 34 H 0.07 0.57 5.59 -51.93 -0.29 0.27 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.90 7.98 -51.93 -0.41 0.48 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -37.77 315.59 -6.61 -44.37 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.81 Total: 4.74 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.50 Total: 9.74 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.20 Total: -48.66 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: 0.17 Total: -30.28 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -37.77 -6.61 -44.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600489206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.062 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds