Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.53007 * 109.47098 * 240.00636 * 2 1 3 5 5 N 1.46490 * 109.47249 * 59.99599 * 4 2 1 6 6 C 1.34783 * 120.00226 * 180.02562 * 5 4 2 7 7 O 1.21687 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.46369 * 120.00228 * 179.97438 * 6 5 4 9 9 H 1.08001 * 120.00224 * 0.02562 * 8 6 5 10 10 C 1.40051 * 120.00038 * 179.97438 * 8 6 5 11 11 N 1.30665 * 119.99662 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99906 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47285 * 90.00140 * 12 10 8 14 14 H 1.48506 * 109.46890 * 209.99983 * 12 10 8 15 15 H 1.48497 * 109.47402 * 329.99730 * 12 10 8 16 16 C 1.50694 * 109.47388 * 120.00400 * 2 1 3 17 17 O 1.21279 * 120.00136 * 116.12030 * 16 2 1 18 18 N 1.34778 * 120.00134 * 295.84553 * 16 2 1 19 19 C 1.47023 * 125.64479 * 354.35229 * 18 16 2 20 20 C 1.54317 * 107.27682 * 180.96479 * 19 18 16 21 21 C 1.55157 * 102.85933 * 22.52498 * 20 19 18 22 22 C 1.47418 * 125.65236 * 174.65571 * 18 16 2 23 23 H 1.09003 * 109.47247 * 305.63700 * 1 2 3 24 24 H 1.09001 * 109.47346 * 65.63788 * 1 2 3 25 25 H 1.09001 * 109.47063 * 185.63940 * 1 2 3 26 26 H 1.09001 * 109.47568 * 164.10617 * 3 2 1 27 27 H 1.09004 * 109.47698 * 284.10753 * 3 2 1 28 28 H 1.09003 * 109.47208 * 44.10420 * 3 2 1 29 29 H 1.08997 * 109.47018 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.46637 * 299.99703 * 4 2 1 31 31 H 0.97002 * 120.00397 * 359.97438 * 5 4 2 32 32 H 0.97008 * 119.99967 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.88253 * 300.51161 * 19 18 16 34 34 H 1.08999 * 109.88315 * 61.67748 * 19 18 16 35 35 H 1.08996 * 110.92587 * 264.11236 * 20 19 18 36 36 H 1.09000 * 110.59008 * 140.78315 * 20 19 18 37 37 H 1.09002 * 111.00569 * 206.22601 * 21 20 19 38 38 H 1.09004 * 111.00583 * 82.37964 * 21 20 19 39 39 H 1.09004 * 110.36746 * 274.67636 * 22 18 16 40 40 H 1.09004 * 110.36974 * 36.88880 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.5516 -0.0305 -2.4454 6 6 1.8768 -0.4912 -3.6696 7 8 2.5764 -1.4805 -3.7813 8 6 1.3883 0.1986 -4.8647 9 1 0.7677 1.0769 -4.7655 10 6 1.7267 -0.2798 -6.1367 11 7 2.4779 -1.3422 -6.2566 12 14 1.1039 0.6009 -7.6618 13 1 2.0819 1.6426 -8.0660 14 1 0.9389 -0.3783 -8.7661 15 1 -0.2043 1.2382 -7.3659 16 6 2.0323 -0.7105 1.2303 17 8 2.6704 -1.7359 1.1204 18 7 1.7773 -0.2033 2.4527 19 6 1.1273 1.0867 2.7266 20 6 1.0708 1.2551 4.2595 21 6 2.2058 0.3187 4.7519 22 6 2.1094 -0.8473 3.7366 23 1 -0.3634 0.5988 0.8352 24 1 -0.3634 0.4239 -0.9362 25 1 -0.3633 -1.0227 0.1010 26 1 3.0929 1.4556 0.2814 27 1 1.9249 1.8686 -0.9967 28 1 1.4653 2.0310 0.7152 29 1 3.1299 -0.7215 -1.2491 30 1 1.6766 -1.7488 -1.2494 31 1 0.9936 0.7579 -2.3564 32 1 2.7120 -1.6738 -7.1377 33 1 1.7082 1.8958 2.2840 34 1 0.1167 1.0867 2.3182 35 1 0.1066 0.9315 4.6515 36 1 1.2749 2.2886 4.5394 37 1 2.0124 -0.0296 5.7664 38 1 3.1753 0.8130 4.6884 39 1 1.3205 -1.5404 4.0287 40 1 3.0638 -1.3689 3.6637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600489206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = -102.701449 kcal Electronic energy + Delta-G solvation = -21094.010741 eV Core-core repulsion = 17907.427681 eV Total energy + Delta-G solvation = -3186.583060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70150 -39.54727 -38.44207 -37.12739 -34.70435 -33.75433 -32.18883 -29.98751 -28.86141 -28.38276 -26.91247 -25.43803 -22.68034 -22.03733 -21.27991 -20.24674 -19.18709 -17.80592 -17.59316 -17.28191 -16.48192 -16.22694 -16.07855 -15.66654 -15.27295 -14.75555 -14.63186 -14.39521 -14.16773 -14.06987 -13.96485 -13.38284 -13.27609 -13.16533 -12.95077 -12.73922 -12.63172 -12.55469 -12.28564 -12.11409 -12.09988 -12.00286 -11.59023 -11.46471 -10.93043 -10.81669 -9.90060 -9.67296 -9.52603 -8.28638 -6.86126 1.41355 1.43905 1.48783 1.59424 1.87004 2.26392 2.47454 3.07149 3.34864 3.59167 3.59917 3.70681 3.81113 3.85728 4.07497 4.10611 4.26748 4.45374 4.54797 4.60505 4.69269 4.72631 4.80646 4.82420 4.88633 4.96853 4.98877 5.05604 5.14774 5.21384 5.25293 5.32260 5.33122 5.44779 5.86088 6.17460 6.25546 6.41505 6.86316 7.04733 7.55249 8.49455 8.68153 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045568 B = 0.003883 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.315645 B = 7210.060639 C = 7591.975575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 C -0.144 4.144 4 C 0.167 3.833 5 N -0.743 5.743 6 C 0.533 3.467 7 O -0.638 6.638 8 C -0.569 4.569 9 H 0.095 0.905 10 C 0.024 3.976 11 N -0.826 5.826 12 Si 1.004 2.996 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.244 1.244 16 C 0.537 3.463 17 O -0.592 6.592 18 N -0.614 5.614 19 C 0.073 3.927 20 C -0.123 4.123 21 C -0.124 4.124 22 C 0.091 3.909 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.399 0.601 32 H 0.274 0.726 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 12.756 21.673 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.201 4.201 4 C 0.041 3.959 5 N -0.400 5.400 6 C 0.338 3.662 7 O -0.525 6.525 8 C -0.605 4.605 9 H 0.113 0.887 10 C -0.191 4.191 11 N -0.455 5.455 12 Si 0.823 3.177 13 H -0.185 1.185 14 H -0.201 1.201 15 H -0.167 1.167 16 C 0.325 3.675 17 O -0.472 6.472 18 N -0.347 5.347 19 C -0.048 4.048 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.031 4.031 23 H 0.122 0.878 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.130 0.870 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.235 0.765 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.931 11.355 21.406 25.203 hybrid contribution 0.210 -0.393 -0.873 0.980 sum -6.721 10.962 20.533 24.227 Atomic orbital electron populations 1.21954 0.89911 1.02698 1.04787 1.20820 0.99339 0.97743 0.90230 1.22142 1.01393 0.91865 1.04722 1.20410 0.96284 0.94346 0.84829 1.45744 1.57097 1.33046 1.04100 1.18783 0.79996 0.83875 0.83588 1.90572 1.44019 1.30805 1.87139 1.21427 1.34603 1.14601 0.89875 0.88668 1.27102 0.92924 0.94659 1.04418 1.70230 1.28788 1.20985 1.25533 0.84930 0.79887 0.77984 0.74894 1.18543 1.20129 1.16653 1.20402 0.78490 0.84014 0.84562 1.90703 1.42090 1.27503 1.86925 1.48480 1.59517 1.22224 1.04452 1.22883 0.98836 0.84347 0.98730 1.22699 0.99661 1.01781 0.91916 1.22771 1.00004 0.94757 0.98628 1.22442 1.00506 0.97254 0.82888 0.87808 0.90432 0.93743 0.93226 0.91016 0.86964 0.96408 0.96369 0.76514 0.91636 0.89235 0.89171 0.89139 0.87583 0.87673 0.90666 0.91026 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.17 71.98 0.59 -2.72 16 2 C -0.08 -2.40 0.50 -52.93 -0.03 -2.43 16 3 C -0.14 -3.40 7.61 71.98 0.55 -2.86 16 4 C 0.17 7.62 3.86 86.38 0.33 7.95 16 5 N -0.74 -34.98 4.74 -467.42 -2.21 -37.19 16 6 C 0.53 32.52 7.75 86.36 0.67 33.19 16 7 O -0.64 -46.05 15.02 -4.31 -0.06 -46.11 16 8 C -0.57 -32.71 9.54 24.83 0.24 -32.47 16 9 H 0.10 4.76 7.85 -2.91 -0.02 4.74 16 10 C 0.02 1.34 5.50 85.31 0.47 1.81 16 11 N -0.83 -52.48 11.83 21.84 0.26 -52.22 16 12 Si 1.00 41.29 29.56 68.60 2.03 43.32 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 14 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 16 C 0.54 17.80 6.51 87.65 0.57 18.37 16 17 O -0.59 -26.34 16.21 -3.03 -0.05 -26.39 16 18 N -0.61 -13.91 3.32 -811.83 -2.70 -16.61 16 19 C 0.07 0.90 5.09 86.73 0.44 1.34 16 20 C -0.12 -0.84 6.95 31.78 0.22 -0.62 16 21 C -0.12 -1.25 7.08 31.98 0.23 -1.02 16 22 C 0.09 1.76 6.94 86.86 0.60 2.36 16 23 H 0.10 1.61 5.13 -2.39 -0.01 1.59 16 24 H 0.08 1.88 6.72 -2.39 -0.02 1.86 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 27 H 0.07 1.81 6.56 -2.38 -0.02 1.79 16 28 H 0.11 1.61 4.98 -2.39 -0.01 1.60 16 29 H 0.02 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 31 H 0.40 15.24 6.20 -92.71 -0.57 14.67 16 32 H 0.27 15.74 8.29 -92.70 -0.77 14.97 16 33 H 0.09 0.96 5.71 -2.39 -0.01 0.95 16 34 H 0.09 0.88 5.59 -2.39 -0.01 0.87 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 40 H 0.05 1.29 7.98 -2.39 -0.02 1.27 16 Total: -1.00 -91.15 315.59 2.62 -88.53 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.48 Total: 23.77 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 4.88 Total: 22.90 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.65 Total: -106.02 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: -0.11 Total: -72.50 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -91.15 2.62 -88.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600489206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.170 kcal (2) G-P(sol) polarization free energy of solvation -91.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds