Wall clock time and date at job start Mon Mar 30 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47169 * 2 1 4 4 C 1.50699 * 109.47469 * 239.99970 * 2 1 3 5 5 H 1.08006 * 119.99427 * 245.49493 * 4 2 1 6 6 C 1.37869 * 120.00176 * 65.48761 * 4 2 1 7 7 N 1.31517 * 120.00276 * 5.21114 * 6 4 2 8 8 Si 1.86807 * 120.00130 * 185.21291 * 6 4 2 9 9 H 1.48502 * 109.47215 * 94.99800 * 8 6 4 10 10 H 1.48499 * 109.47131 * 215.00071 * 8 6 4 11 11 H 1.48502 * 109.46635 * 334.99829 * 8 6 4 12 12 N 1.46494 * 109.47154 * 119.99292 * 2 1 3 13 13 N 1.40097 * 120.00237 * 270.00377 * 12 2 1 14 14 C 1.28015 * 120.00068 * 184.89095 * 13 12 2 15 15 C 1.51275 * 120.84849 * 354.36466 * 14 13 12 16 16 C 1.53228 * 108.69324 * 231.41865 * 15 14 13 17 17 C 1.52958 * 109.40513 * 305.27529 * 16 15 14 18 18 H 1.09003 * 109.41423 * 303.56886 * 17 16 15 19 19 C 1.50694 * 109.41542 * 183.70746 * 17 16 15 20 20 O 1.20835 * 120.00220 * 240.00030 * 19 17 16 21 21 O 1.34231 * 120.00291 * 59.99819 * 19 17 16 22 22 C 1.52959 * 109.81834 * 63.59973 * 17 16 15 23 23 H 1.09002 * 109.48370 * 176.40737 * 22 17 16 24 24 C 1.53005 * 109.48111 * 56.38051 * 22 17 16 25 25 C 1.51666 * 121.10137 * 174.51846 * 14 13 12 26 26 H 1.09000 * 109.47158 * 294.96018 * 1 2 3 27 27 H 1.09006 * 109.47020 * 54.95852 * 1 2 3 28 28 H 1.08995 * 109.47208 * 174.95762 * 1 2 3 29 29 H 0.97005 * 120.00299 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99705 * 90.00177 * 12 2 1 31 31 H 1.08997 * 109.62197 * 111.60867 * 15 14 13 32 32 H 1.09000 * 109.62602 * 351.22768 * 15 14 13 33 33 H 1.08997 * 109.48346 * 65.25251 * 16 15 14 34 34 H 1.09002 * 109.47799 * 185.30146 * 16 15 14 35 35 H 0.96694 * 117.00056 * 180.02562 * 21 19 17 36 36 H 1.08998 * 109.46574 * 60.00378 * 24 22 17 37 37 H 1.09000 * 109.46930 * 180.02562 * 24 22 17 38 38 H 1.08996 * 109.47003 * 300.00090 * 24 22 17 39 39 H 1.09003 * 109.55446 * 8.87202 * 25 14 13 40 40 H 1.09001 * 109.75291 * 248.45509 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5782 -1.6374 -1.1337 6 6 1.7952 -0.1771 -2.4795 7 7 1.2215 1.0008 -2.5935 8 14 2.2887 -1.1277 -4.0100 9 1 1.1238 -1.9018 -4.5091 10 1 2.7381 -0.1778 -5.0593 11 1 3.3966 -2.0593 -3.6783 12 7 2.0183 -0.6904 1.1962 13 7 2.2518 0.0302 2.3747 14 6 2.7665 -0.5541 3.3909 15 6 3.0130 -2.0466 3.3852 16 6 2.3915 -2.6518 4.6482 17 6 2.9407 -1.9310 5.8804 18 1 4.0289 -1.9934 5.8816 19 6 2.4001 -2.5851 7.1258 20 8 1.7386 -1.9430 7.9069 21 8 2.6534 -3.8809 7.3674 22 6 2.5173 -0.4615 5.8532 23 1 2.8569 0.0316 6.7641 24 6 0.9926 -0.3713 5.7622 25 6 3.1436 0.2263 4.6355 26 1 -0.3633 0.4337 0.9317 27 1 -0.3633 0.5901 -0.8414 28 1 -0.3633 -1.0236 -0.0903 29 1 1.0543 1.3758 -3.4724 30 1 2.1800 -1.6466 1.1722 31 1 4.0856 -2.2404 3.3759 32 1 2.5531 -2.4902 2.5021 33 1 1.3083 -2.5357 4.6119 34 1 2.6422 -3.7111 4.7049 35 1 2.2852 -4.2564 8.1788 36 1 0.5474 -0.8616 6.6279 37 1 0.6912 0.6760 5.7423 38 1 0.6533 -0.8640 4.8510 39 1 2.7651 1.2454 4.5558 40 1 4.2280 0.2459 4.7436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814880776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:15 Heat of formation + Delta-G solvation = -68.034171 kcal Electronic energy + Delta-G solvation = -20861.784258 eV Core-core repulsion = 17676.704484 eV Total energy + Delta-G solvation = -3185.079774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86533 -38.61069 -36.44791 -35.81259 -33.82489 -31.82444 -31.40390 -28.91267 -27.43921 -26.16171 -25.11100 -22.99370 -22.51246 -20.63914 -19.66646 -18.31852 -18.05624 -17.26473 -16.55909 -15.96203 -15.47936 -15.03678 -14.34309 -14.26376 -13.99631 -13.60083 -13.47840 -12.76143 -12.69039 -12.50118 -12.23587 -11.81872 -11.78745 -11.61386 -11.41496 -11.37199 -10.98610 -10.96611 -10.73249 -10.70404 -10.61385 -10.34989 -10.21494 -10.17874 -9.94052 -9.19180 -8.91407 -8.48267 -6.81850 -6.12371 -4.17953 2.04844 2.83121 3.03455 3.25055 3.32044 3.34477 3.94079 4.38625 4.49722 4.60636 4.88809 5.05188 5.17745 5.21717 5.24127 5.31250 5.54442 5.56984 5.64460 5.71915 5.85958 5.94919 6.02689 6.12757 6.16814 6.25310 6.34439 6.51337 6.61056 6.78889 6.98085 7.10041 7.16327 7.60150 7.73868 7.79888 7.84636 8.22120 8.37113 8.91624 9.47663 9.50925 10.95738 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036577 B = 0.003811 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.316939 B = 7346.096969 C = 7670.840403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.298 3.702 3 H 0.045 0.955 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.638 5.638 13 N -0.205 5.205 14 C -0.008 4.008 15 C -0.102 4.102 16 C -0.103 4.103 17 C -0.073 4.073 18 H 0.110 0.890 19 C 0.482 3.518 20 O -0.512 6.512 21 O -0.518 6.518 22 C -0.069 4.069 23 H 0.080 0.920 24 C -0.156 4.156 25 C -0.039 4.039 26 H 0.015 0.985 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.264 0.736 30 H 0.366 0.634 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -7.172 17.395 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.196 3.804 3 H 0.063 0.937 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.377 5.377 13 N -0.014 5.014 14 C -0.202 4.202 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.092 4.092 18 H 0.128 0.872 19 C 0.325 3.675 20 O -0.400 6.400 21 O -0.329 6.329 22 C -0.088 4.088 23 H 0.099 0.901 24 C -0.213 4.213 25 C -0.078 4.078 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.204 0.796 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.110 -5.677 16.570 17.789 hybrid contribution 0.186 -1.981 -0.226 2.002 sum 3.296 -7.658 16.343 18.347 Atomic orbital electron populations 1.22147 0.99699 0.99375 0.99154 1.18442 0.89560 0.93863 0.78578 0.93744 1.21217 1.36526 1.08621 0.90452 0.92357 1.24857 0.95035 0.94760 0.98897 1.69953 1.42544 1.15804 1.24042 0.86473 0.78718 0.79677 0.82469 1.20605 1.21077 1.19878 1.48931 1.74726 1.07698 1.06364 1.73430 1.06017 1.27705 0.94288 1.24154 1.06685 0.93140 0.96186 1.20949 1.01316 0.94500 0.97423 1.21521 1.01280 0.99092 0.92226 1.21128 1.02338 0.95831 0.89888 0.87236 1.23714 0.76793 0.79448 0.87547 1.90682 1.36946 1.64204 1.48127 1.84566 1.73156 1.27520 1.47680 1.21010 0.97272 0.91834 0.98713 0.90123 1.22031 0.94503 1.02427 1.02297 1.20390 0.99854 0.98551 0.89022 0.96627 0.90954 0.95401 0.92652 0.79566 0.90705 0.90968 0.90900 0.90721 0.73545 0.91525 0.92441 0.92315 0.90000 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.29 37.16 0.35 -3.20 16 2 C 0.30 7.64 3.10 -69.09 -0.21 7.43 16 3 H 0.04 1.28 8.12 -51.93 -0.42 0.86 16 4 C -0.53 -14.28 8.67 -34.44 -0.30 -14.58 16 5 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 6 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 7 N -0.89 -25.04 12.00 55.43 0.66 -24.38 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.64 -14.04 5.98 -5.88 -0.04 -14.07 16 13 N -0.21 -4.10 11.44 35.97 0.41 -3.69 16 14 C -0.01 -0.12 5.58 -78.15 -0.44 -0.56 16 15 C -0.10 -1.33 5.85 -27.48 -0.16 -1.49 16 16 C -0.10 -1.12 4.90 -26.63 -0.13 -1.25 16 17 C -0.07 -0.73 2.30 -91.82 -0.21 -0.94 16 18 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.48 5.02 7.34 36.00 0.26 5.28 16 20 O -0.51 -6.63 14.63 -18.76 -0.27 -6.90 16 21 O -0.52 -4.15 13.25 -39.26 -0.52 -4.67 16 22 C -0.07 -0.77 2.33 -90.52 -0.21 -0.98 16 23 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 24 C -0.16 -1.98 8.31 37.16 0.31 -1.67 16 25 C -0.04 -0.48 5.65 -27.29 -0.15 -0.63 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 1.90 6.85 -51.93 -0.36 1.54 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.37 7.50 6.11 -182.60 -1.12 6.38 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.05 5.68 -51.93 -0.30 0.75 16 33 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 34 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 35 H 0.41 1.58 9.10 45.56 0.41 2.00 16 36 H 0.07 0.88 5.83 -51.93 -0.30 0.57 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.83 5.61 -51.93 -0.29 0.54 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -30.81 319.36 -6.98 -37.78 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.02 Total: 6.15 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.99 Total: -10.87 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.04 Total: -42.14 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.79 Total: -11.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.81 -6.98 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814880776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.250 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds