Wall clock time and date at job start Mon Mar 30 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 H 1.08996 * 109.47563 * 0.27920 * 3 2 1 5 5 C 1.53010 * 109.46881 * 120.27744 * 3 2 1 6 6 O 1.42901 * 109.47479 * 240.27631 * 3 2 1 7 7 N 1.41599 * 114.00079 * 155.00407 * 6 3 2 8 8 C 1.34778 * 119.99855 * 180.02562 * 7 6 3 9 9 O 1.21585 * 119.99911 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99713 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99699 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.01770 * 325.05560 * 11 10 8 13 13 C 1.53870 * 110.03870 * 86.44878 * 11 10 8 14 14 C 1.54267 * 106.60164 * 119.28193 * 13 11 10 15 15 C 1.54893 * 104.19429 * 23.61243 * 14 13 11 16 16 H 1.08996 * 110.75186 * 80.55615 * 15 14 13 17 17 C 1.50702 * 110.75679 * 203.74313 * 15 14 13 18 18 H 1.07998 * 119.99995 * 118.54743 * 17 15 14 19 19 C 1.37878 * 119.99824 * 298.54948 * 17 15 14 20 20 N 1.31513 * 120.00093 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99674 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46986 * 119.99674 * 21 19 17 24 24 H 1.48497 * 109.47170 * 239.99604 * 21 19 17 25 25 C 1.54267 * 110.02923 * 203.61870 * 11 10 8 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 28 28 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 29 29 H 1.08996 * 109.46879 * 59.99757 * 5 3 2 30 30 H 1.08996 * 109.46838 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.46811 * 299.99835 * 5 3 2 32 32 H 0.97004 * 120.00007 * 359.97438 * 7 6 3 33 33 H 0.96998 * 120.00114 * 359.97438 * 10 8 7 34 34 H 1.09002 * 110.03690 * 238.57134 * 13 11 10 35 35 H 1.09003 * 110.03093 * 359.95469 * 13 11 10 36 36 H 1.08993 * 110.48783 * 142.29230 * 14 13 11 37 37 H 1.09007 * 110.48746 * 264.93907 * 14 13 11 38 38 H 0.96997 * 119.99854 * 180.02562 * 20 19 17 39 39 H 1.08994 * 110.48484 * 335.77712 * 25 11 10 40 40 H 1.08999 * 110.48886 * 98.42870 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 6 2.9483 1.3831 1.2458 6 8 2.8801 1.3837 -1.1700 7 7 3.1830 2.7069 -1.5731 8 6 3.9458 2.9213 -2.6634 9 8 4.3742 1.9785 -3.3005 10 7 4.2344 4.1807 -3.0468 11 6 5.0631 4.4137 -4.2322 12 1 5.8221 3.6359 -4.3156 13 6 4.1841 4.4299 -5.4950 14 6 4.3508 5.8258 -6.1303 15 6 5.7198 6.3223 -5.6024 16 1 6.5366 5.8879 -6.1788 17 6 5.7895 7.8274 -5.6317 18 1 5.9246 8.3797 -4.7135 19 6 5.6809 8.4993 -6.8307 20 7 5.5169 7.8267 -7.9489 21 14 5.7681 10.3649 -6.8671 22 1 5.9557 10.8787 -5.4864 23 1 6.9114 10.7906 -7.7138 24 1 4.5060 10.9086 -7.4298 25 6 5.7334 5.8003 -4.1441 26 1 -0.5400 -0.9353 -0.0045 27 1 -0.5401 0.9353 0.0045 28 1 1.8500 -0.9353 -0.0046 29 1 3.6565 0.5546 1.2408 30 1 3.4929 2.3273 1.2461 31 1 2.3253 1.3232 2.1383 32 1 2.8409 3.4591 -1.0650 33 1 3.8930 4.9328 -2.5383 34 1 4.5170 3.6605 -6.1917 35 1 3.1410 4.2636 -5.2260 36 1 4.3656 5.7508 -7.2175 37 1 3.5519 6.4915 -5.8036 38 1 5.4408 8.2995 -8.7925 39 1 5.1577 6.4619 -3.4968 40 1 6.7573 5.7068 -3.7820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845619266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:38 Heat of formation + Delta-G solvation = -14.098098 kcal Electronic energy + Delta-G solvation = -20185.156274 eV Core-core repulsion = 17002.415344 eV Total energy + Delta-G solvation = -3182.740930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77540 -38.30796 -36.93180 -34.59941 -33.67192 -32.28280 -31.14882 -29.89396 -28.12022 -26.75689 -23.92185 -23.55018 -21.46108 -20.39212 -19.68622 -19.16374 -18.45734 -17.71942 -16.46986 -15.89312 -15.53730 -14.96572 -14.69153 -14.57027 -14.25302 -13.97294 -13.78279 -13.53778 -12.64281 -12.59559 -12.31261 -12.18631 -11.76507 -11.39040 -11.31467 -11.07843 -10.96606 -10.90871 -10.54448 -10.30496 -10.04158 -9.94404 -9.81289 -9.49277 -9.21914 -8.96599 -8.78005 -8.49162 -8.35853 -6.00155 -4.03750 1.40517 2.05169 3.29299 3.37768 3.40498 3.44079 3.98923 4.36460 4.41848 4.44516 4.53115 4.76188 4.95028 5.29560 5.32099 5.33850 5.51451 5.54955 5.70430 5.75171 5.86937 6.12429 6.20543 6.33624 6.37500 6.54139 6.68993 6.74451 6.83702 6.91266 6.95718 7.01994 7.30246 7.39763 7.74132 7.90346 8.04088 8.15077 8.43309 8.84130 8.98625 9.60434 11.08921 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.003111 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.086190 B = 8998.547779 C = 9130.206722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.078 0.922 5 C -0.173 4.173 6 O -0.120 6.120 7 N -0.620 5.620 8 C 0.717 3.283 9 O -0.575 6.575 10 N -0.725 5.725 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.137 4.137 14 C -0.100 4.100 15 C 0.051 3.949 16 H 0.033 0.967 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.120 4.120 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.394 0.606 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.259 0.741 39 H 0.061 0.939 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -10.073 17.004 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.027 3.973 4 H 0.095 0.905 5 C -0.231 4.231 6 O -0.123 6.123 7 N -0.326 5.326 8 C 0.417 3.583 9 O -0.450 6.450 10 N -0.383 5.383 11 C 0.056 3.944 12 H 0.100 0.900 13 C -0.176 4.176 14 C -0.138 4.138 15 C 0.032 3.968 16 H 0.051 0.949 17 C -0.552 4.552 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.158 4.158 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.377 -11.134 16.111 21.300 hybrid contribution -0.586 1.701 0.674 1.921 sum -8.963 -9.433 16.786 21.238 Atomic orbital electron populations 1.23970 0.95485 1.02572 0.98198 1.22620 0.95555 0.97216 1.01390 1.21658 0.92430 0.97047 0.86134 0.90451 1.22307 1.00445 1.03329 0.96980 1.90646 1.71821 1.04734 1.45121 1.46314 1.58029 0.97389 1.30877 1.15511 0.78861 0.84546 0.79351 1.90929 1.56951 1.41406 1.55728 1.45414 1.56456 1.04409 1.31987 1.21820 0.91530 0.98762 0.82301 0.90030 1.22690 0.98309 1.00243 0.96321 1.22310 0.99474 0.91394 1.00661 1.19567 0.93721 0.95213 0.88303 0.94871 1.21127 1.49934 0.91117 0.93019 0.92610 1.24981 0.95139 0.98051 0.95776 1.69971 1.49664 1.35031 0.97919 0.86592 0.77551 0.86156 0.77989 1.19860 1.21090 1.21139 1.22771 0.98510 0.92700 1.01864 0.87388 0.88261 0.86159 0.91260 0.91831 0.91219 0.76072 0.77268 0.92447 0.93142 0.91226 0.93536 0.93115 0.92021 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 14.32 29.02 0.42 -0.69 16 2 C -0.15 -1.22 9.15 -36.02 -0.33 -1.55 16 3 C 0.09 0.77 3.22 -27.88 -0.09 0.68 16 4 H 0.08 0.56 7.58 -51.93 -0.39 0.17 16 5 C -0.17 -1.29 9.55 37.16 0.35 -0.94 16 6 O -0.12 -1.64 10.73 -29.62 -0.32 -1.96 16 7 N -0.62 -8.01 6.38 27.63 0.18 -7.83 16 8 C 0.72 12.07 8.70 -86.91 -0.76 11.32 16 9 O -0.57 -12.49 16.43 -12.86 -0.21 -12.70 16 10 N -0.72 -11.05 5.00 -57.58 -0.29 -11.33 16 11 C 0.16 2.92 3.23 -66.82 -0.22 2.70 16 12 H 0.08 1.59 7.60 -51.93 -0.39 1.20 16 13 C -0.14 -2.71 6.59 -25.62 -0.17 -2.88 16 14 C -0.10 -2.29 5.57 -25.07 -0.14 -2.43 16 15 C 0.05 1.22 2.82 -89.77 -0.25 0.96 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.51 -13.61 8.54 -34.44 -0.29 -13.91 16 18 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 19 C 0.06 1.69 5.33 -17.82 -0.10 1.60 16 20 N -0.89 -25.14 12.02 55.43 0.67 -24.47 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 C -0.12 -2.33 5.94 -25.07 -0.15 -2.47 16 26 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 27 H 0.10 0.58 7.83 -52.49 -0.41 0.17 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 3.52 8.44 -40.82 -0.34 3.17 16 33 H 0.39 4.76 8.36 -40.82 -0.34 4.42 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 36 H 0.07 1.76 7.37 -51.93 -0.38 1.37 16 37 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -32.62 336.20 -8.07 -40.68 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.42 Total: 4.31 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.72 Total: -7.61 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.55 Total: -43.63 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.53 Total: -14.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.62 -8.07 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845619266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.586 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds