Wall clock time and date at job start Mon Mar 30 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 H 1.08996 * 109.47563 * 0.27920 * 3 2 1 5 5 C 1.53010 * 109.46881 * 120.27744 * 3 2 1 6 6 O 1.42901 * 109.47479 * 240.27631 * 3 2 1 7 7 N 1.41599 * 114.00079 * 155.00407 * 6 3 2 8 8 C 1.34778 * 119.99855 * 180.02562 * 7 6 3 9 9 O 1.21585 * 119.99911 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99713 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99699 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.01770 * 325.05560 * 11 10 8 13 13 C 1.53870 * 110.03870 * 86.44878 * 11 10 8 14 14 C 1.54267 * 106.60164 * 119.28193 * 13 11 10 15 15 C 1.54893 * 104.19429 * 23.61243 * 14 13 11 16 16 H 1.08996 * 110.75186 * 80.55615 * 15 14 13 17 17 C 1.50702 * 110.75679 * 203.74313 * 15 14 13 18 18 H 1.07998 * 119.99995 * 118.54743 * 17 15 14 19 19 C 1.37878 * 119.99824 * 298.54948 * 17 15 14 20 20 N 1.31513 * 120.00093 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99674 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46986 * 119.99674 * 21 19 17 24 24 H 1.48497 * 109.47170 * 239.99604 * 21 19 17 25 25 C 1.54267 * 110.02923 * 203.61870 * 11 10 8 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 28 28 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 29 29 H 1.08996 * 109.46879 * 59.99757 * 5 3 2 30 30 H 1.08996 * 109.46838 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.46811 * 299.99835 * 5 3 2 32 32 H 0.97004 * 120.00007 * 359.97438 * 7 6 3 33 33 H 0.96998 * 120.00114 * 359.97438 * 10 8 7 34 34 H 1.09002 * 110.03690 * 238.57134 * 13 11 10 35 35 H 1.09003 * 110.03093 * 359.95469 * 13 11 10 36 36 H 1.08993 * 110.48783 * 142.29230 * 14 13 11 37 37 H 1.09007 * 110.48746 * 264.93907 * 14 13 11 38 38 H 0.96997 * 119.99854 * 180.02562 * 20 19 17 39 39 H 1.08994 * 110.48484 * 335.77712 * 25 11 10 40 40 H 1.08999 * 110.48886 * 98.42870 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 6 2.9483 1.3831 1.2458 6 8 2.8801 1.3837 -1.1700 7 7 3.1830 2.7069 -1.5731 8 6 3.9458 2.9213 -2.6634 9 8 4.3742 1.9785 -3.3005 10 7 4.2344 4.1807 -3.0468 11 6 5.0631 4.4137 -4.2322 12 1 5.8221 3.6359 -4.3156 13 6 4.1841 4.4299 -5.4950 14 6 4.3508 5.8258 -6.1303 15 6 5.7198 6.3223 -5.6024 16 1 6.5366 5.8879 -6.1788 17 6 5.7895 7.8274 -5.6317 18 1 5.9246 8.3797 -4.7135 19 6 5.6809 8.4993 -6.8307 20 7 5.5169 7.8267 -7.9489 21 14 5.7681 10.3649 -6.8671 22 1 5.9557 10.8787 -5.4864 23 1 6.9114 10.7906 -7.7138 24 1 4.5060 10.9086 -7.4298 25 6 5.7334 5.8003 -4.1441 26 1 -0.5400 -0.9353 -0.0045 27 1 -0.5401 0.9353 0.0045 28 1 1.8500 -0.9353 -0.0046 29 1 3.6565 0.5546 1.2408 30 1 3.4929 2.3273 1.2461 31 1 2.3253 1.3232 2.1383 32 1 2.8409 3.4591 -1.0650 33 1 3.8930 4.9328 -2.5383 34 1 4.5170 3.6605 -6.1917 35 1 3.1410 4.2636 -5.2260 36 1 4.3656 5.7508 -7.2175 37 1 3.5519 6.4915 -5.8036 38 1 5.4408 8.2995 -8.7925 39 1 5.1577 6.4619 -3.4968 40 1 6.7573 5.7068 -3.7820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845619266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:38 Heat of formation + Delta-G solvation = -34.682844 kcal Electronic energy + Delta-G solvation = -20186.048896 eV Core-core repulsion = 17002.415344 eV Total energy + Delta-G solvation = -3183.633552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09171 -39.35007 -38.43560 -35.43170 -35.30116 -33.97167 -32.31865 -30.63437 -29.89998 -28.41283 -25.75646 -24.27848 -22.71255 -21.39462 -21.13780 -20.74884 -19.52080 -18.91499 -18.34589 -16.97495 -16.79049 -16.54322 -16.03206 -15.86915 -15.58387 -15.21175 -14.58816 -14.45484 -14.41289 -13.98473 -13.60426 -13.15280 -13.00570 -12.84813 -12.79355 -12.59476 -12.34775 -12.08461 -12.06843 -11.92775 -11.64015 -11.36970 -11.29666 -11.03728 -10.76000 -10.56964 -10.43217 -10.23746 -9.70845 -8.06254 -6.16437 0.48854 1.34394 1.44419 1.46931 1.57410 2.12094 2.47676 2.87074 3.24863 3.62280 3.75013 3.93821 3.95535 4.07535 4.12597 4.24895 4.40952 4.72174 4.75308 4.77460 4.79908 4.95394 4.98332 5.06133 5.11193 5.18701 5.21169 5.29625 5.44912 5.58732 5.59904 5.65943 5.71156 5.73140 5.97214 6.04572 6.06135 6.41240 6.94660 7.03997 7.51370 7.60293 9.02372 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.003111 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.086190 B = 8998.547779 C = 9130.206722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.174 4.174 3 C 0.080 3.920 4 H 0.098 0.902 5 C -0.169 4.169 6 O -0.151 6.151 7 N -0.601 5.601 8 C 0.716 3.284 9 O -0.628 6.628 10 N -0.710 5.710 11 C 0.173 3.827 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.089 4.089 15 C 0.039 3.961 16 H 0.000 1.000 17 C -0.525 4.525 18 H 0.061 0.939 19 C 0.009 3.991 20 N -0.921 5.921 21 Si 0.953 3.047 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.284 1.284 25 C -0.104 4.104 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.422 0.578 33 H 0.413 0.587 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 -9.300 19.374 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.194 4.194 3 C 0.023 3.977 4 H 0.116 0.884 5 C -0.227 4.227 6 O -0.155 6.155 7 N -0.307 5.307 8 C 0.417 3.583 9 O -0.507 6.507 10 N -0.369 5.369 11 C 0.068 3.932 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.127 4.127 15 C 0.020 3.980 16 H 0.018 0.982 17 C -0.563 4.563 18 H 0.079 0.921 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.780 3.220 22 H -0.186 1.186 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.142 4.142 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.250 0.750 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.715 -10.322 18.562 23.355 hybrid contribution -0.248 1.407 -0.020 1.429 sum -9.963 -8.915 18.542 22.859 Atomic orbital electron populations 1.24218 0.94968 1.03837 0.95599 1.22649 0.96179 0.96792 1.03739 1.21961 0.92594 0.98173 0.84981 0.88404 1.22283 1.00347 1.02850 0.97181 1.90649 1.72915 1.04723 1.47221 1.45929 1.56625 0.98400 1.29772 1.15591 0.78898 0.84044 0.79799 1.90900 1.59081 1.43052 1.57705 1.45015 1.55885 1.04851 1.31171 1.21412 0.91246 0.97825 0.82750 0.91159 1.22565 0.99351 0.97840 0.96798 1.22080 0.98760 0.93136 0.98759 1.19556 0.93011 0.94310 0.91156 0.98151 1.21516 1.49140 0.92472 0.93173 0.92061 1.25784 0.95068 1.02503 0.95569 1.70114 1.50839 1.36702 0.98405 0.85574 0.77265 0.80850 0.78346 1.18606 1.21220 1.20987 1.22564 0.99678 0.93116 0.98883 0.86034 0.87084 0.86709 0.92506 0.91695 0.89172 0.73518 0.75004 0.93249 0.91976 0.94446 0.94098 0.93285 0.90223 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 14.32 67.79 0.97 -0.65 16 2 C -0.17 -2.58 9.15 25.65 0.23 -2.35 16 3 C 0.08 1.28 3.22 29.85 0.10 1.38 16 4 H 0.10 1.12 7.58 -2.39 -0.02 1.11 16 5 C -0.17 -2.21 9.55 71.99 0.69 -1.52 16 6 O -0.15 -3.94 10.73 -21.43 -0.23 -4.17 16 7 N -0.60 -14.29 6.38 -184.74 -1.18 -15.47 16 8 C 0.72 23.09 8.70 179.05 1.56 24.65 16 9 O -0.63 -27.15 16.43 13.37 0.22 -26.93 16 10 N -0.71 -20.15 5.00 -454.36 -2.27 -22.42 16 11 C 0.17 6.14 3.23 45.71 0.15 6.29 16 12 H 0.07 2.72 7.60 -2.39 -0.02 2.70 16 13 C -0.13 -4.99 6.59 31.32 0.21 -4.78 16 14 C -0.09 -4.14 5.57 31.67 0.18 -3.96 16 15 C 0.04 1.87 2.82 -10.24 -0.03 1.84 16 16 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 17 C -0.52 -27.67 8.54 25.60 0.22 -27.45 16 18 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 19 C 0.01 0.50 5.33 84.66 0.45 0.95 16 20 N -0.92 -53.25 12.02 21.45 0.26 -53.00 16 21 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C -0.10 -3.89 5.94 31.67 0.19 -3.70 16 26 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 27 H 0.11 0.94 7.83 -2.91 -0.02 0.91 16 28 H 0.11 1.77 8.06 -2.91 -0.02 1.74 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.42 6.13 8.44 -92.71 -0.78 5.34 16 33 H 0.41 8.62 8.36 -92.71 -0.77 7.85 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.29 7.92 -2.39 -0.02 2.27 16 36 H 0.04 1.95 7.37 -2.39 -0.02 1.93 16 37 H 0.04 1.91 8.04 -2.38 -0.02 1.89 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.08 2.68 7.63 -2.39 -0.02 2.67 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -71.48 336.20 3.20 -68.28 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.53 Total: 18.35 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.91 Total: -9.30 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -3.19 Total: -90.88 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.01 Total: -31.10 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.48 3.20 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845619266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.597 kcal (2) G-P(sol) polarization free energy of solvation -71.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds