Wall clock time and date at job start Mon Mar 30 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.50706 * 109.46953 * 269.99930 * 3 2 1 5 5 H 1.07999 * 120.00193 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99398 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 11 11 H 1.48498 * 109.47295 * 60.00420 * 8 6 4 12 12 C 1.34782 * 119.99992 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00104 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99925 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47053 * 180.02562 * 14 12 2 16 16 C 1.46850 * 111.00199 * 294.21155 * 15 14 12 17 17 C 1.53042 * 109.52096 * 174.15840 * 16 15 14 18 18 C 1.53113 * 109.27669 * 59.18383 * 17 16 15 19 19 C 1.53121 * 109.16378 * 302.33974 * 18 17 16 20 20 H 1.08995 * 109.53732 * 297.70121 * 19 18 17 21 21 C 1.50696 * 109.50486 * 177.59620 * 19 18 17 22 22 O 1.20756 * 119.99787 * 120.20400 * 21 19 18 23 23 C 1.46847 * 110.99825 * 170.00314 * 15 14 12 24 24 H 1.08997 * 109.47511 * 89.99979 * 1 2 3 25 25 H 1.09003 * 109.46932 * 209.99484 * 1 2 3 26 26 H 1.08997 * 109.46966 * 329.99369 * 1 2 3 27 27 H 1.09000 * 109.47175 * 150.00360 * 3 2 1 28 28 H 1.08992 * 109.46764 * 30.00437 * 3 2 1 29 29 H 0.97000 * 119.99706 * 359.97438 * 7 6 4 30 30 H 1.08996 * 109.47526 * 300.01133 * 14 12 2 31 31 H 1.09007 * 109.46849 * 60.00926 * 14 12 2 32 32 H 1.08998 * 109.46397 * 294.17773 * 16 15 14 33 33 H 1.09001 * 109.46043 * 54.14668 * 16 15 14 34 34 H 1.08997 * 109.50520 * 299.23832 * 17 16 15 35 35 H 1.08995 * 109.53101 * 179.14375 * 17 16 15 36 36 H 1.09002 * 109.52595 * 182.43768 * 18 17 16 37 37 H 1.09001 * 109.58087 * 62.27773 * 18 17 16 38 38 H 1.07997 * 120.00042 * 300.19681 * 21 19 18 39 39 H 1.09003 * 109.46500 * 305.85407 * 23 15 14 40 40 H 1.09001 * 109.46335 * 65.83918 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4367 3.4175 -3.4339 9 1 4.1793 4.7035 -3.4339 10 1 4.2395 2.3830 -4.1343 11 1 2.1390 3.5948 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 7 2.3399 -3.5889 -0.0005 16 6 3.1093 -3.6236 -1.2509 17 6 4.1892 -4.7039 -1.1570 18 6 3.5261 -6.0610 -0.9062 19 6 2.6922 -5.9837 0.3757 20 1 3.3446 -5.7721 1.2228 21 6 1.9887 -7.2977 0.5983 22 8 2.1970 -7.9310 1.6052 23 6 1.6556 -4.8662 0.2375 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.3916 3.3380 0.2414 30 1 0.7589 -2.5303 0.8895 31 1 0.7584 -2.5299 -0.8904 32 1 2.4413 -3.8489 -2.0822 33 1 3.5790 -2.6538 -1.4152 34 1 4.8657 -4.4718 -0.3345 35 1 4.7505 -4.7401 -2.0907 36 1 4.2939 -6.8268 -0.7955 37 1 2.8793 -6.3125 -1.7468 38 1 1.2983 -7.6729 -0.1425 39 1 1.0696 -4.7991 1.1541 40 1 0.9946 -5.0859 -0.6010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054218568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:49 Heat of formation + Delta-G solvation = -67.507024 kcal Electronic energy + Delta-G solvation = -20887.684869 eV Core-core repulsion = 17702.627954 eV Total energy + Delta-G solvation = -3185.056915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11056 -39.19646 -37.88137 -34.96939 -33.69815 -32.80017 -31.35755 -28.49530 -26.93249 -25.42486 -24.84055 -23.46347 -22.45040 -21.33090 -20.06608 -18.65085 -16.98170 -16.62606 -16.53546 -15.82017 -15.46584 -15.20024 -14.92774 -14.63459 -14.23504 -13.99747 -13.71559 -13.49974 -13.10932 -12.94805 -12.71953 -12.33213 -12.32295 -11.87483 -11.71206 -11.50002 -11.31699 -10.93712 -10.89219 -10.82328 -10.61447 -10.53977 -10.11336 -9.79218 -9.12513 -8.97568 -8.39867 -8.25016 -7.62664 -6.39665 -4.11748 1.64861 3.33487 3.41497 3.45219 3.47795 3.63053 3.97838 4.18022 4.52056 4.54393 4.56491 4.75457 4.95494 5.08439 5.18977 5.26880 5.31357 5.33093 5.37157 5.37873 5.50892 5.57261 5.60738 5.76836 5.78929 5.85214 5.95820 6.07325 6.24152 6.33371 6.74884 6.95476 7.05905 7.09449 7.14422 7.39137 8.02569 8.27289 8.41261 8.76572 9.02450 9.58081 10.97709 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.004095 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.139406 B = 6835.317353 C = 7321.367061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.602 5.602 3 C 0.237 3.763 4 C -0.606 4.606 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 1.071 2.929 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.506 3.494 13 O -0.522 6.522 14 C 0.040 3.960 15 N -0.518 5.518 16 C 0.047 3.953 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.154 4.154 20 H 0.103 0.897 21 C 0.353 3.647 22 O -0.460 6.460 23 C 0.069 3.931 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.021 0.979 29 H 0.268 0.732 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -17.947 -1.123 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C 0.117 3.883 4 C -0.645 4.645 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.215 1.215 12 C 0.292 3.708 13 O -0.398 6.398 14 C -0.091 4.091 15 N -0.243 5.243 16 C -0.080 4.080 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.174 4.174 20 H 0.121 0.879 21 C 0.208 3.792 22 O -0.330 6.330 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.602 -16.991 -1.097 17.924 hybrid contribution -1.538 -1.202 0.130 1.956 sum -7.140 -18.193 -0.967 19.567 Atomic orbital electron populations 1.21613 0.81354 1.01617 1.01172 1.47964 1.06090 1.07439 1.71987 1.19340 0.92022 0.78851 0.98077 1.22231 1.40758 1.09584 0.91919 0.93187 1.25810 0.93325 0.93324 1.06027 1.70802 1.43990 1.39588 1.00128 0.83511 0.76398 0.76329 0.73840 1.20631 1.21416 1.21489 1.20123 0.88256 0.84634 0.77833 1.90641 1.13641 1.86711 1.48848 1.22005 0.94208 0.90636 1.02296 1.61478 1.24841 1.01133 1.36859 1.22333 0.95317 1.01986 0.88342 1.21519 0.97990 0.92876 1.02574 1.21509 0.98853 0.98785 0.95501 1.22178 0.99033 0.94432 1.01736 0.87876 1.26039 0.80362 0.85903 0.86867 1.90407 1.56532 1.57199 1.28886 1.21888 0.94333 0.88730 1.01000 0.93192 0.92611 0.91430 0.94812 0.96152 0.92202 0.88517 0.92378 0.95478 0.87813 0.90593 0.91092 0.91479 0.91564 0.89017 0.90475 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 10.29 59.84 0.62 1.95 16 2 N -0.60 -12.60 2.86 -182.96 -0.52 -13.12 16 3 C 0.24 6.14 4.52 -5.19 -0.02 6.12 16 4 C -0.61 -17.28 9.39 -34.44 -0.32 -17.60 16 5 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 6 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -27.73 13.65 55.43 0.76 -26.98 16 8 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.51 10.30 7.35 -10.98 -0.08 10.22 16 13 O -0.52 -12.88 13.90 5.55 0.08 -12.80 16 14 C 0.04 0.57 4.00 -4.98 -0.02 0.55 16 15 N -0.52 -7.26 4.40 -236.10 -1.04 -8.30 16 16 C 0.05 0.67 5.11 -3.83 -0.02 0.65 16 17 C -0.11 -1.30 6.09 -26.65 -0.16 -1.46 16 18 C -0.11 -0.96 5.27 -26.61 -0.14 -1.10 16 19 C -0.15 -1.47 2.77 -91.69 -0.25 -1.72 16 20 H 0.10 1.19 8.12 -51.93 -0.42 0.77 16 21 C 0.35 3.01 10.45 36.00 0.38 3.39 16 22 O -0.46 -5.83 17.90 6.00 0.11 -5.72 16 23 C 0.07 0.69 4.73 -3.83 -0.02 0.67 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 26 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 27 H 0.03 0.98 7.29 -51.93 -0.38 0.60 16 28 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 29 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 30 H 0.10 1.16 7.25 -51.93 -0.38 0.79 16 31 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 1.91 5.78 -51.93 -0.30 1.61 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.08 0.72 8.02 -51.93 -0.42 0.31 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -35.23 326.06 -7.28 -42.51 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.34 Total: -2.98 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.15 Total: 2.13 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.80 Total: -48.40 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.23 -7.28 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054218568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.996 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds