Wall clock time and date at job start Mon Mar 30 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.50706 * 109.46953 * 269.99930 * 3 2 1 5 5 H 1.07999 * 120.00193 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99398 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 11 11 H 1.48498 * 109.47295 * 60.00420 * 8 6 4 12 12 C 1.34782 * 119.99992 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00104 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99925 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47053 * 180.02562 * 14 12 2 16 16 C 1.46850 * 111.00199 * 294.21155 * 15 14 12 17 17 C 1.53042 * 109.52096 * 174.15840 * 16 15 14 18 18 C 1.53113 * 109.27669 * 59.18383 * 17 16 15 19 19 C 1.53121 * 109.16378 * 302.33974 * 18 17 16 20 20 H 1.08995 * 109.53732 * 297.70121 * 19 18 17 21 21 C 1.50696 * 109.50486 * 177.59620 * 19 18 17 22 22 O 1.20756 * 119.99787 * 120.20400 * 21 19 18 23 23 C 1.46847 * 110.99825 * 170.00314 * 15 14 12 24 24 H 1.08997 * 109.47511 * 89.99979 * 1 2 3 25 25 H 1.09003 * 109.46932 * 209.99484 * 1 2 3 26 26 H 1.08997 * 109.46966 * 329.99369 * 1 2 3 27 27 H 1.09000 * 109.47175 * 150.00360 * 3 2 1 28 28 H 1.08992 * 109.46764 * 30.00437 * 3 2 1 29 29 H 0.97000 * 119.99706 * 359.97438 * 7 6 4 30 30 H 1.08996 * 109.47526 * 300.01133 * 14 12 2 31 31 H 1.09007 * 109.46849 * 60.00926 * 14 12 2 32 32 H 1.08998 * 109.46397 * 294.17773 * 16 15 14 33 33 H 1.09001 * 109.46043 * 54.14668 * 16 15 14 34 34 H 1.08997 * 109.50520 * 299.23832 * 17 16 15 35 35 H 1.08995 * 109.53101 * 179.14375 * 17 16 15 36 36 H 1.09002 * 109.52595 * 182.43768 * 18 17 16 37 37 H 1.09001 * 109.58087 * 62.27773 * 18 17 16 38 38 H 1.07997 * 120.00042 * 300.19681 * 21 19 18 39 39 H 1.09003 * 109.46500 * 305.85407 * 23 15 14 40 40 H 1.09001 * 109.46335 * 65.83918 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4367 3.4175 -3.4339 9 1 4.1793 4.7035 -3.4339 10 1 4.2395 2.3830 -4.1343 11 1 2.1390 3.5948 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 7 2.3399 -3.5889 -0.0005 16 6 3.1093 -3.6236 -1.2509 17 6 4.1892 -4.7039 -1.1570 18 6 3.5261 -6.0610 -0.9062 19 6 2.6922 -5.9837 0.3757 20 1 3.3446 -5.7721 1.2228 21 6 1.9887 -7.2977 0.5983 22 8 2.1970 -7.9310 1.6052 23 6 1.6556 -4.8662 0.2375 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 3.1499 1.1384 0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.3916 3.3380 0.2414 30 1 0.7589 -2.5303 0.8895 31 1 0.7584 -2.5299 -0.8904 32 1 2.4413 -3.8489 -2.0822 33 1 3.5790 -2.6538 -1.4152 34 1 4.8657 -4.4718 -0.3345 35 1 4.7505 -4.7401 -2.0907 36 1 4.2939 -6.8268 -0.7955 37 1 2.8793 -6.3125 -1.7468 38 1 1.2983 -7.6729 -0.1425 39 1 1.0696 -4.7991 1.1541 40 1 0.9946 -5.0859 -0.6010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054218568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:48 Heat of formation + Delta-G solvation = -93.626304 kcal Electronic energy + Delta-G solvation = -20888.817486 eV Core-core repulsion = 17702.627954 eV Total energy + Delta-G solvation = -3186.189532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18655 -40.37445 -38.96446 -36.71970 -35.04533 -34.55164 -32.24411 -30.13139 -28.31894 -27.02494 -25.70410 -25.04628 -23.81142 -22.20592 -20.89529 -20.21073 -19.04762 -18.00363 -17.52785 -16.95026 -16.66055 -16.42581 -16.01263 -15.69196 -15.49879 -15.45843 -15.22337 -14.46915 -14.45392 -14.21545 -13.86053 -13.75125 -13.57452 -13.41292 -13.24153 -12.95168 -12.70607 -12.46604 -12.41896 -11.96588 -11.86136 -11.71041 -11.40763 -11.18310 -10.70478 -10.62385 -10.37876 -9.45518 -9.25396 -8.69655 -6.46107 0.99898 1.48519 1.57892 1.76940 1.80263 2.17845 2.53529 2.89442 3.09285 3.42499 3.68741 3.77493 3.79920 4.00208 4.16364 4.24643 4.29037 4.36136 4.43735 4.54429 4.59626 4.64391 4.70996 4.73542 4.75654 4.88956 4.92987 4.93327 4.96653 5.13942 5.24923 5.39535 5.56166 5.81483 5.92477 6.13058 6.16349 6.43682 6.44127 6.71760 7.30228 7.46308 8.64672 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.004095 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.139406 B = 6835.317353 C = 7321.367061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.611 5.611 3 C 0.247 3.753 4 C -0.615 4.615 5 H 0.046 0.954 6 C -0.033 4.033 7 N -0.933 5.933 8 Si 1.119 2.881 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.260 1.260 12 C 0.492 3.508 13 O -0.579 6.579 14 C 0.055 3.945 15 N -0.546 5.546 16 C 0.051 3.949 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.155 4.155 20 H 0.070 0.930 21 C 0.371 3.629 22 O -0.507 6.507 23 C 0.070 3.930 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.067 0.933 27 H -0.011 1.011 28 H 0.017 0.983 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -20.289 -2.910 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.125 3.875 4 C -0.654 4.654 5 H 0.064 0.936 6 C -0.231 4.231 7 N -0.570 5.570 8 Si 0.940 3.060 9 H -0.205 1.205 10 H -0.205 1.205 11 H -0.185 1.185 12 C 0.281 3.719 13 O -0.459 6.459 14 C -0.075 4.075 15 N -0.271 5.271 16 C -0.076 4.076 17 C -0.148 4.148 18 C -0.137 4.137 19 C -0.175 4.175 20 H 0.089 0.911 21 C 0.229 3.771 22 O -0.379 6.379 23 C -0.057 4.057 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.007 0.993 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.147 0.853 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.163 0.837 39 H 0.105 0.895 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.393 -19.363 -2.876 21.299 hybrid contribution -0.669 -0.475 0.732 1.100 sum -9.062 -19.838 -2.143 21.915 Atomic orbital electron populations 1.21928 0.77643 1.04090 1.02450 1.48047 1.08407 1.05930 1.71991 1.18849 0.90824 0.81484 0.96350 1.22533 1.40444 1.09515 0.92891 0.93603 1.27400 0.92635 0.93669 1.09420 1.70927 1.45598 1.40433 0.99998 0.82923 0.77708 0.76055 0.69353 1.20528 1.20498 1.18469 1.21364 0.88074 0.86363 0.76086 1.90620 1.16511 1.87699 1.51074 1.21932 0.93577 0.87068 1.04932 1.61372 1.25909 1.02865 1.36997 1.22167 0.96133 0.99937 0.89388 1.21483 0.97235 0.94173 1.01921 1.21458 0.99337 0.96749 0.96182 1.22170 0.98904 0.95547 1.00870 0.91128 1.26481 0.79627 0.84337 0.86627 1.90419 1.58185 1.58192 1.31148 1.21978 0.94475 0.86490 1.02759 0.92384 0.87829 0.91369 0.99286 0.96498 0.93621 0.85322 0.89640 0.93414 0.93126 0.93580 0.90186 0.90675 0.88493 0.83671 0.89496 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.29 127.77 1.31 3.61 16 2 N -0.61 -25.71 2.86 -851.13 -2.43 -28.15 16 3 C 0.25 13.39 4.52 85.63 0.39 13.77 16 4 C -0.62 -35.98 9.39 25.60 0.24 -35.74 16 5 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 6 C -0.03 -1.96 5.46 84.66 0.46 -1.50 16 7 N -0.93 -58.73 13.65 21.45 0.29 -58.43 16 8 Si 1.12 51.18 29.90 68.60 2.05 53.24 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 C 0.49 20.25 7.35 87.66 0.64 20.89 16 13 O -0.58 -30.25 13.90 -3.04 -0.04 -30.29 16 14 C 0.06 1.45 4.00 85.56 0.34 1.79 16 15 N -0.55 -14.39 4.40 -900.89 -3.96 -18.35 16 16 C 0.05 1.43 5.11 86.33 0.44 1.87 16 17 C -0.11 -2.52 6.09 30.65 0.19 -2.33 16 18 C -0.10 -1.48 5.27 30.67 0.16 -1.32 16 19 C -0.16 -2.55 2.77 -11.49 -0.03 -2.59 16 20 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 21 C 0.37 4.93 10.45 71.23 0.74 5.68 16 22 O -0.51 -11.82 17.90 -1.44 -0.03 -11.85 16 23 C 0.07 1.14 4.73 86.33 0.41 1.55 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 26 H 0.07 1.92 7.89 -2.39 -0.02 1.90 16 27 H -0.01 -0.68 7.29 -2.39 -0.02 -0.70 16 28 H 0.02 0.92 7.76 -2.39 -0.02 0.90 16 29 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 30 H 0.13 2.54 7.25 -2.39 -0.02 2.52 16 31 H 0.09 1.82 8.09 -2.38 -0.02 1.80 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.96 5.78 -2.39 -0.01 1.95 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.09 1.27 8.02 -2.39 -0.02 1.25 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.96 326.06 2.29 -81.67 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.11 Total: 6.48 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.30 Total: 5.68 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.10 Total: -104.93 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.07 Total: -42.14 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.24 kcal Total: -83.96 2.29 -81.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054218568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.959 kcal (2) G-P(sol) polarization free energy of solvation -83.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds