Wall clock time and date at job start Mon Mar 30 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99373 * 2 1 4 4 C 1.50699 * 109.46825 * 269.99940 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.34770 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00541 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99486 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.47113 * 179.97438 * 14 12 2 16 16 C 1.50333 * 111.00221 * 289.37664 * 15 14 12 17 17 C 1.50942 * 101.80040 * 212.10758 * 16 15 14 18 18 H 1.09000 * 110.69486 * 292.16426 * 17 16 15 19 19 C 1.50169 * 126.41407 * 154.48595 * 17 16 15 20 20 O 1.45599 * 105.09806 * 218.20663 * 19 17 16 21 21 C 1.46101 * 108.95685 * 7.51725 * 20 19 17 22 22 C 1.50669 * 102.43987 * 25.53065 * 21 20 19 23 23 H 1.08995 * 110.19613 * 69.19592 * 22 21 20 24 24 C 1.49943 * 111.00235 * 169.99970 * 15 14 12 25 25 H 1.08998 * 109.47520 * 90.00210 * 1 2 3 26 26 H 1.09010 * 109.46689 * 209.99917 * 1 2 3 27 27 H 1.09003 * 109.47452 * 329.99593 * 1 2 3 28 28 H 1.09004 * 109.46958 * 150.00352 * 3 2 1 29 29 H 1.08997 * 109.47731 * 30.00028 * 3 2 1 30 30 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47629 * 300.00004 * 14 12 2 32 32 H 1.09003 * 109.47335 * 60.00360 * 14 12 2 33 33 H 1.09004 * 110.95997 * 330.23580 * 16 15 14 34 34 H 1.08998 * 110.96708 * 93.97867 * 16 15 14 35 35 H 1.09002 * 110.32110 * 337.11459 * 19 17 16 36 36 H 1.08999 * 110.31680 * 99.30280 * 19 17 16 37 37 H 1.08999 * 110.81162 * 267.29183 * 21 20 19 38 38 H 1.08993 * 110.81341 * 143.76929 * 21 20 19 39 39 H 1.08998 * 110.44046 * 232.67780 * 24 15 14 40 40 H 1.08997 * 110.43423 * 355.18805 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1266 2.8776 -1.6728 7 7 3.3453 3.2575 -2.9128 8 14 3.7347 3.9282 -0.2531 9 1 5.1081 3.5061 0.1224 10 1 2.8290 3.7588 0.9116 11 1 3.7504 5.3551 -0.6643 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.0432 -3.6951 -1.3263 17 6 3.2707 -5.1832 -1.4364 18 1 3.9901 -5.5192 -0.6896 19 6 3.4326 -5.9687 -2.7060 20 8 2.7333 -7.2233 -2.4675 21 6 2.0225 -7.1358 -1.1941 22 6 1.8067 -5.6522 -1.0441 23 1 1.0878 -5.2998 -1.7837 24 6 1.6418 -4.8932 0.2413 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 3.1499 1.1386 0.5138 29 1 1.6083 2.0285 0.5138 30 1 3.8227 4.0831 -3.0901 31 1 0.7592 -2.5303 0.8896 32 1 0.7585 -2.5298 -0.8903 33 1 2.4066 -3.3370 -2.1355 34 1 3.9903 -3.1560 -1.3096 35 1 2.9791 -5.4355 -3.5415 36 1 4.4882 -6.1555 -2.9035 37 1 2.6363 -7.5222 -0.3805 38 1 1.0696 -7.6625 -1.2455 39 1 2.1141 -5.4304 1.0637 40 1 0.5855 -4.7259 0.4516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718251201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:02 Heat of formation + Delta-G solvation = -35.590444 kcal Electronic energy + Delta-G solvation = -21083.202521 eV Core-core repulsion = 17899.529613 eV Total energy + Delta-G solvation = -3183.672908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94874 -39.00698 -36.83110 -34.84991 -32.63838 -31.98795 -30.67453 -28.93845 -27.07818 -26.84276 -25.75096 -23.35144 -21.79282 -20.85259 -20.40342 -18.56599 -17.28852 -16.96795 -16.34077 -15.82587 -15.56923 -15.35631 -14.88774 -14.74264 -14.31008 -13.78640 -13.62169 -13.39152 -12.88737 -12.71250 -12.42679 -12.35238 -12.13142 -11.93586 -11.65872 -11.60512 -11.50034 -11.21427 -11.03229 -10.89595 -10.52657 -10.37850 -10.13535 -9.80316 -9.55458 -9.03133 -8.59355 -8.32979 -7.69280 -6.09472 -4.08126 3.28840 3.34161 3.35592 3.36813 3.44486 3.54169 3.63659 4.11897 4.39253 4.42922 4.74455 4.95293 5.00498 5.04494 5.13717 5.19551 5.25712 5.29900 5.31589 5.37149 5.46193 5.52650 5.58308 5.62175 5.72927 5.81452 5.85933 6.03727 6.10586 6.18876 6.48420 6.63640 6.72372 6.83433 6.97597 7.34521 7.60763 8.24925 8.46489 8.92275 9.01747 9.51036 11.03996 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.004277 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.132944 B = 6545.193627 C = 6975.449773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.285 1.285 12 C 0.508 3.492 13 O -0.522 6.522 14 C 0.030 3.970 15 N -0.504 5.504 16 C 0.068 3.932 17 C -0.148 4.148 18 H 0.096 0.904 19 C 0.070 3.930 20 O -0.392 6.392 21 C 0.074 3.926 22 C -0.173 4.173 23 H 0.085 0.915 24 C 0.062 3.938 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -17.278 5.878 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.211 1.211 12 C 0.294 3.706 13 O -0.397 6.397 14 C -0.102 4.102 15 N -0.228 5.228 16 C -0.059 4.059 17 C -0.168 4.168 18 H 0.114 0.886 19 C -0.007 4.007 20 O -0.312 6.312 21 C -0.002 4.002 22 C -0.193 4.193 23 H 0.103 0.897 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.848 -17.154 6.056 19.108 hybrid contribution -0.459 0.845 -0.003 0.961 sum -6.306 -16.309 6.052 18.503 Atomic orbital electron populations 1.21634 0.81117 1.01631 1.01414 1.47835 1.06154 1.07113 1.72416 1.19660 0.92488 0.79906 0.98299 1.21320 1.36913 1.07143 0.91285 0.90925 1.24862 0.95231 0.97352 0.95588 1.69898 1.41512 1.23608 1.18678 0.86836 0.80161 0.79706 0.82889 1.19866 1.19090 1.21084 1.20102 0.88236 0.84566 0.77727 1.90659 1.13613 1.86825 1.48625 1.22281 0.94417 0.91138 1.02326 1.65179 1.25406 1.01058 1.31144 1.22357 1.00933 0.93134 0.89445 1.23033 0.97265 0.97452 0.99023 0.88618 1.22188 0.97495 0.84696 0.96326 1.89357 1.67168 1.35783 1.38875 1.22401 0.96780 0.94148 0.86892 1.23309 0.98595 0.96902 1.00502 0.89704 1.22100 0.98397 0.90040 0.96029 0.92972 0.92588 0.91326 0.94540 0.95301 0.92566 0.88401 0.92223 0.92943 0.88042 0.91127 0.90031 0.91408 0.89426 0.89675 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.28 59.85 0.62 1.90 16 2 N -0.60 -12.26 2.86 -182.95 -0.52 -12.79 16 3 C 0.22 5.31 4.27 -5.19 -0.02 5.29 16 4 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 5 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.51 10.22 7.48 -10.99 -0.08 10.14 16 13 O -0.52 -12.74 14.76 5.56 0.08 -12.66 16 14 C 0.03 0.43 3.73 -4.97 -0.02 0.42 16 15 N -0.50 -7.14 4.98 -233.32 -1.16 -8.30 16 16 C 0.07 0.98 5.59 -2.93 -0.02 0.97 16 17 C -0.15 -1.71 3.02 -89.93 -0.27 -1.98 16 18 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 19 C 0.07 0.76 7.62 35.75 0.27 1.03 16 20 O -0.39 -4.67 11.60 -35.23 -0.41 -5.08 16 21 C 0.07 0.69 7.62 35.99 0.27 0.96 16 22 C -0.17 -1.73 2.97 -90.06 -0.27 -1.99 16 23 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 24 C 0.06 0.63 6.70 -3.52 -0.02 0.61 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.62 6.44 -51.92 -0.33 0.29 16 27 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 28 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 29 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.10 1.15 7.24 -51.93 -0.38 0.77 16 32 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 33 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 34 H 0.10 1.75 7.49 -51.93 -0.39 1.36 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.57 7.58 -51.93 -0.39 0.17 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -34.44 318.56 -7.48 -41.93 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.40 Total: -1.69 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 0.02 Total: 3.80 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.91 Total: -48.06 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.33 Total: -17.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.44 -7.48 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718251201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.335 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds