Wall clock time and date at job start Mon Mar 30 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99373 * 2 1 4 4 C 1.50699 * 109.46825 * 269.99940 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.34770 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00541 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99486 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.47113 * 179.97438 * 14 12 2 16 16 C 1.50333 * 111.00221 * 289.37664 * 15 14 12 17 17 C 1.50942 * 101.80040 * 212.10758 * 16 15 14 18 18 H 1.09000 * 110.69486 * 292.16426 * 17 16 15 19 19 C 1.50169 * 126.41407 * 154.48595 * 17 16 15 20 20 O 1.45599 * 105.09806 * 218.20663 * 19 17 16 21 21 C 1.46101 * 108.95685 * 7.51725 * 20 19 17 22 22 C 1.50669 * 102.43987 * 25.53065 * 21 20 19 23 23 H 1.08995 * 110.19613 * 69.19592 * 22 21 20 24 24 C 1.49943 * 111.00235 * 169.99970 * 15 14 12 25 25 H 1.08998 * 109.47520 * 90.00210 * 1 2 3 26 26 H 1.09010 * 109.46689 * 209.99917 * 1 2 3 27 27 H 1.09003 * 109.47452 * 329.99593 * 1 2 3 28 28 H 1.09004 * 109.46958 * 150.00352 * 3 2 1 29 29 H 1.08997 * 109.47731 * 30.00028 * 3 2 1 30 30 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47629 * 300.00004 * 14 12 2 32 32 H 1.09003 * 109.47335 * 60.00360 * 14 12 2 33 33 H 1.09004 * 110.95997 * 330.23580 * 16 15 14 34 34 H 1.08998 * 110.96708 * 93.97867 * 16 15 14 35 35 H 1.09002 * 110.32110 * 337.11459 * 19 17 16 36 36 H 1.08999 * 110.31680 * 99.30280 * 19 17 16 37 37 H 1.08999 * 110.81162 * 267.29183 * 21 20 19 38 38 H 1.08993 * 110.81341 * 143.76929 * 21 20 19 39 39 H 1.08998 * 110.44046 * 232.67780 * 24 15 14 40 40 H 1.08997 * 110.43423 * 355.18805 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1266 2.8776 -1.6728 7 7 3.3453 3.2575 -2.9128 8 14 3.7347 3.9282 -0.2531 9 1 5.1081 3.5061 0.1224 10 1 2.8290 3.7588 0.9116 11 1 3.7504 5.3551 -0.6643 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.0432 -3.6951 -1.3263 17 6 3.2707 -5.1832 -1.4364 18 1 3.9901 -5.5192 -0.6896 19 6 3.4326 -5.9687 -2.7060 20 8 2.7333 -7.2233 -2.4675 21 6 2.0225 -7.1358 -1.1941 22 6 1.8067 -5.6522 -1.0441 23 1 1.0878 -5.2998 -1.7837 24 6 1.6418 -4.8932 0.2413 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 3.1499 1.1386 0.5138 29 1 1.6083 2.0285 0.5138 30 1 3.8227 4.0831 -3.0901 31 1 0.7592 -2.5303 0.8896 32 1 0.7585 -2.5298 -0.8903 33 1 2.4066 -3.3370 -2.1355 34 1 3.9903 -3.1560 -1.3096 35 1 2.9791 -5.4355 -3.5415 36 1 4.4882 -6.1555 -2.9035 37 1 2.6363 -7.5222 -0.3805 38 1 1.0696 -7.6625 -1.2455 39 1 2.1141 -5.4304 1.0637 40 1 0.5855 -4.7259 0.4516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718251201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:02 Heat of formation + Delta-G solvation = -62.666803 kcal Electronic energy + Delta-G solvation = -21084.376640 eV Core-core repulsion = 17899.529613 eV Total energy + Delta-G solvation = -3184.847027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89055 -40.49157 -37.86717 -36.52788 -34.72417 -33.13929 -31.54569 -30.72642 -28.30438 -27.74467 -27.20738 -24.80851 -23.29236 -21.76260 -21.30819 -20.05170 -19.16229 -18.36968 -17.65095 -17.09563 -16.74018 -16.62892 -16.12214 -15.90973 -15.75742 -15.10742 -14.69335 -14.60033 -14.54779 -14.03864 -13.77603 -13.63276 -13.61483 -13.27280 -12.92720 -12.79099 -12.66193 -12.52887 -12.43861 -12.13394 -12.01741 -11.92577 -11.76187 -11.29541 -10.84215 -10.63774 -10.57817 -9.44012 -9.35223 -8.35334 -6.40330 1.31941 1.36453 1.44678 1.83174 2.19403 2.30263 2.64952 2.73954 2.96690 2.99551 3.56505 3.77808 3.87076 4.10192 4.14831 4.22478 4.24462 4.30123 4.33284 4.47453 4.49247 4.63081 4.68681 4.73937 4.78000 4.84601 4.89486 4.91357 4.93719 4.97376 5.02436 5.20090 5.45076 5.61507 5.64592 5.70473 5.85070 6.23648 6.60572 6.73295 7.21144 7.47846 8.81807 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.004277 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.132944 B = 6545.193627 C = 6975.449773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.224 3.776 4 C -0.536 4.536 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.237 1.237 11 H -0.275 1.275 12 C 0.495 3.505 13 O -0.578 6.578 14 C 0.044 3.956 15 N -0.526 5.526 16 C 0.071 3.929 17 C -0.148 4.148 18 H 0.094 0.906 19 C 0.071 3.929 20 O -0.410 6.410 21 C 0.074 3.926 22 C -0.157 4.157 23 H 0.081 0.919 24 C 0.066 3.934 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 -18.494 8.277 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.102 3.898 4 C -0.574 4.574 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.160 1.160 11 H -0.200 1.200 12 C 0.283 3.717 13 O -0.457 6.457 14 C -0.088 4.088 15 N -0.251 5.251 16 C -0.057 4.057 17 C -0.168 4.168 18 H 0.112 0.888 19 C -0.006 4.006 20 O -0.331 6.331 21 C -0.002 4.002 22 C -0.176 4.176 23 H 0.100 0.900 24 C -0.060 4.060 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.977 -18.400 8.467 21.769 hybrid contribution 0.169 1.168 -0.831 1.444 sum -7.808 -17.232 7.636 20.401 Atomic orbital electron populations 1.21958 0.77599 1.04660 1.02070 1.47974 1.08441 1.05898 1.72074 1.19326 0.92772 0.82582 0.95137 1.21566 1.36710 1.06688 0.92460 0.95615 1.25872 0.95282 0.98976 0.98644 1.70054 1.42772 1.24543 1.21341 0.85694 0.79540 0.77711 0.79863 1.20320 1.15961 1.19966 1.21251 0.88057 0.86311 0.76059 1.90630 1.16323 1.87801 1.50974 1.22241 0.93847 0.87850 1.04824 1.65070 1.26544 1.02884 1.30581 1.22118 0.99074 0.94650 0.89826 1.22876 0.98961 0.95398 0.99526 0.88812 1.22176 0.97922 0.84552 0.95943 1.89340 1.67533 1.35863 1.40316 1.22594 0.97799 0.93620 0.86182 1.23249 0.96725 0.97407 1.00259 0.90022 1.22181 0.99764 0.87804 0.96217 0.93455 0.87797 0.90149 0.96533 0.93108 0.92278 0.84418 0.90580 0.93928 0.92229 0.91372 0.89446 0.90219 0.87240 0.88507 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 10.28 127.77 1.31 3.45 16 2 N -0.61 -24.44 2.86 -851.12 -2.43 -26.87 16 3 C 0.22 10.97 4.27 85.63 0.37 11.34 16 4 C -0.54 -31.83 9.94 25.60 0.25 -31.58 16 5 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 8 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.49 19.82 7.48 87.66 0.66 20.47 16 13 O -0.58 -29.28 14.76 -3.02 -0.04 -29.33 16 14 C 0.04 1.15 3.73 85.56 0.32 1.47 16 15 N -0.53 -14.15 4.98 -892.09 -4.44 -18.59 16 16 C 0.07 2.10 5.59 84.96 0.48 2.58 16 17 C -0.15 -3.35 3.02 -10.35 -0.03 -3.39 16 18 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.07 1.52 7.62 71.07 0.54 2.06 16 20 O -0.41 -9.10 11.60 -148.98 -1.73 -10.83 16 21 C 0.07 1.15 7.62 71.23 0.54 1.69 16 22 C -0.16 -2.72 2.97 -10.43 -0.03 -2.75 16 23 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 24 C 0.07 1.12 6.70 84.80 0.57 1.69 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.80 6.44 -2.38 -0.02 1.78 16 27 H 0.08 1.99 7.89 -2.39 -0.02 1.97 16 28 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 29 H 0.05 2.26 6.95 -2.39 -0.02 2.24 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.14 2.53 7.24 -2.39 -0.02 2.51 16 32 H 0.08 1.79 7.82 -2.39 -0.02 1.77 16 33 H 0.04 1.31 7.72 -2.38 -0.02 1.29 16 34 H 0.06 2.24 7.49 -2.39 -0.02 2.22 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.12 7.58 -2.39 -0.02 1.10 16 Total: -1.00 -80.04 318.56 -0.06 -80.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.96 Total: 10.87 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.44 Total: 8.09 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -6.57 Total: -105.60 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.77 Total: -40.15 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -80.04 -0.06 -80.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718251201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.437 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds