Wall clock time and date at job start Mon Mar 30 2020 04:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00583 * 2 1 3 5 5 H 1.08004 * 119.99749 * 119.99503 * 4 2 1 6 6 C 1.37871 * 119.99826 * 299.99951 * 4 2 1 7 7 N 1.31522 * 120.00048 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00245 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47236 * 89.99890 * 8 6 4 10 10 H 1.48499 * 109.47275 * 209.99925 * 8 6 4 11 11 H 1.48500 * 109.46915 * 329.99843 * 8 6 4 12 12 N 1.46906 * 109.46957 * 240.00443 * 2 1 3 13 13 C 1.46900 * 111.00145 * 183.95264 * 12 2 1 14 14 C 1.46904 * 110.99620 * 60.00304 * 12 2 1 15 15 C 1.53006 * 109.46673 * 190.00005 * 14 12 2 16 16 H 1.08993 * 110.46875 * 307.62812 * 15 14 12 17 17 C 1.54089 * 110.51731 * 184.99869 * 15 14 12 18 18 N 1.47092 * 103.77657 * 241.36838 * 17 15 14 19 19 C 1.46498 * 125.56208 * 180.02562 * 18 17 15 20 20 C 1.53004 * 117.50220 * 188.62078 * 19 18 17 21 21 C 1.53005 * 60.00158 * 252.51154 * 20 19 18 22 22 C 1.34009 * 108.88294 * 0.02562 * 18 17 15 23 23 O 1.21507 * 123.07186 * 179.97438 * 22 18 17 24 24 O 1.33766 * 113.85232 * 0.02562 * 22 18 17 25 25 H 1.08994 * 109.47902 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46931 * 299.99824 * 1 2 3 27 27 H 1.09003 * 109.47387 * 59.99263 * 1 2 3 28 28 H 0.96999 * 120.00110 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47267 * 296.04846 * 13 12 2 30 30 H 1.09004 * 109.46910 * 56.04737 * 13 12 2 31 31 H 1.08998 * 109.47187 * 176.04785 * 13 12 2 32 32 H 1.08992 * 109.47335 * 70.00243 * 14 12 2 33 33 H 1.08997 * 109.46819 * 309.99878 * 14 12 2 34 34 H 1.08999 * 110.56802 * 359.93863 * 17 15 14 35 35 H 1.09001 * 110.56598 * 122.79637 * 17 15 14 36 36 H 1.08996 * 115.55058 * 334.33592 * 19 18 17 37 37 H 1.08998 * 117.49655 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.49938 * 145.02236 * 20 19 18 39 39 H 1.08996 * 117.49802 * 252.50723 * 21 20 19 40 40 H 1.08993 * 117.51302 * 107.47839 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1374 -0.8599 3.5564 8 14 0.6260 1.2796 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9773 1.9949 3.9072 11 1 0.8492 2.1772 1.4925 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7945 -1.1872 14 6 1.5485 -0.0261 -2.4211 15 6 1.8625 -0.9040 -3.6343 16 1 2.9157 -1.1846 -3.6393 17 6 1.4918 -0.1740 -4.9396 18 7 0.4654 -1.0370 -5.5442 19 6 -0.2201 -0.7844 -6.8140 20 6 -1.3976 -1.6925 -7.1742 21 6 -0.0685 -1.8316 -7.9193 22 6 0.2596 -2.0920 -4.7440 23 8 -0.5399 -2.9710 -4.9981 24 8 1.0141 -2.0885 -3.6394 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.9034 -0.5284 4.4375 29 1 3.9191 0.2043 -1.2301 30 1 3.8069 -1.2916 -0.2721 31 1 3.8162 -1.3720 -2.0503 32 1 2.0518 0.9348 -2.5280 33 1 0.4722 0.1327 -2.3563 34 1 1.0831 0.8131 -4.7236 35 1 2.3598 -0.0952 -5.5942 36 1 -0.2796 0.2612 -7.1162 37 1 -1.6625 -2.4777 -6.4661 38 1 -2.2323 -1.2444 -7.7133 39 1 -0.0288 -1.4750 -8.9485 40 1 0.5414 -2.7082 -7.7016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844304814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:50 Heat of formation + Delta-G solvation = -10.272372 kcal Electronic energy + Delta-G solvation = -21254.493857 eV Core-core repulsion = 18071.918823 eV Total energy + Delta-G solvation = -3182.575034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63678 -38.23282 -37.19653 -36.56340 -33.85332 -32.90659 -30.92759 -29.64494 -26.71368 -24.60790 -24.09116 -23.93706 -22.58274 -22.01279 -20.25545 -19.44782 -17.64664 -17.10749 -16.69177 -16.30911 -15.87662 -15.21988 -14.66608 -14.60970 -14.11980 -13.97151 -13.84584 -13.45250 -13.12180 -12.89292 -12.56964 -12.36855 -12.10969 -11.78651 -11.77015 -11.34974 -11.15102 -11.04867 -10.76042 -10.70025 -10.55456 -10.17464 -10.14462 -10.09846 -9.52770 -9.07500 -8.82906 -8.59370 -7.46898 -6.09531 -4.08720 2.32509 2.72500 3.24639 3.32127 3.35707 3.44956 3.61134 3.97455 4.36438 4.40006 4.49180 4.59213 4.76291 4.83703 4.94632 5.07807 5.21828 5.23276 5.27623 5.45406 5.63810 5.69539 5.84441 5.89421 5.95275 6.08356 6.16042 6.32374 6.41031 6.44516 6.50718 6.72932 6.84482 7.21878 7.42937 7.53068 7.82702 7.97607 8.07807 8.59637 8.96821 9.51570 11.03121 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035931 B = 0.004343 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.080865 B = 6446.153752 C = 6605.291214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.184 3.816 3 H -0.001 1.001 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.521 5.521 13 C 0.031 3.969 14 C 0.038 3.962 15 C 0.076 3.924 16 H 0.117 0.883 17 C 0.074 3.926 18 N -0.609 5.609 19 C 0.099 3.901 20 C -0.187 4.187 21 C -0.191 4.191 22 C 0.641 3.359 23 O -0.525 6.525 24 O -0.297 6.297 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 5.207 -21.323 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.077 3.923 3 H 0.016 0.984 4 C -0.545 4.545 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.245 5.245 13 C -0.117 4.117 14 C -0.091 4.091 15 C 0.020 3.980 16 H 0.134 0.866 17 C -0.050 4.050 18 N -0.356 5.356 19 C -0.004 4.004 20 C -0.224 4.224 21 C -0.230 4.230 22 C 0.396 3.604 23 O -0.411 6.411 24 O -0.206 6.206 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.626 4.109 -21.004 21.464 hybrid contribution -0.194 1.841 0.169 1.859 sum -1.821 5.950 -20.835 21.745 Atomic orbital electron populations 1.22231 0.98487 1.01650 0.98062 1.19697 0.91497 0.92521 0.88623 0.98375 1.20964 1.32096 1.13662 0.87799 0.89744 1.24919 0.95762 0.96624 0.95799 1.69877 1.45610 1.40184 0.97900 0.86881 0.80901 0.83730 0.76779 1.20480 1.22457 1.19546 1.61913 1.10080 1.51717 1.00746 1.22365 0.87691 0.99044 1.02640 1.22522 1.02442 0.93843 0.90252 1.24027 0.95804 0.83635 0.94532 0.86566 1.22878 0.92344 0.95723 0.94070 1.47420 1.41879 1.24239 1.22053 1.21309 0.99986 0.96659 0.82469 1.23776 0.91630 1.03472 1.03571 1.23403 1.01221 1.01614 0.96741 1.18763 0.80654 0.82017 0.78983 1.90888 1.36305 1.39688 1.74239 1.87511 1.51234 1.43263 1.38625 0.91770 0.93943 0.95442 0.92559 0.96739 0.89285 0.93475 0.93252 0.89583 0.88923 0.88983 0.84864 0.84939 0.88271 0.88084 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.47 37.15 0.31 -2.92 16 2 C 0.18 4.24 1.65 -68.86 -0.11 4.13 16 3 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 4 C -0.51 -13.95 8.46 -34.44 -0.29 -14.24 16 5 H 0.08 2.52 6.65 -52.48 -0.35 2.18 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.89 21.66 24.37 -169.99 -4.14 17.52 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.52 -10.29 4.62 -236.28 -1.09 -11.39 16 13 C 0.03 0.55 9.06 60.06 0.54 1.09 16 14 C 0.04 0.58 4.31 -3.82 -0.02 0.56 16 15 C 0.08 0.97 3.83 -26.16 -0.10 0.87 16 16 H 0.12 1.32 6.31 -51.93 -0.33 0.99 16 17 C 0.07 0.68 7.34 -3.15 -0.02 0.65 16 18 N -0.61 -7.23 3.30 -171.23 -0.56 -7.80 16 19 C 0.10 0.93 6.95 -67.93 -0.47 0.46 16 20 C -0.19 -1.92 9.78 -26.73 -0.26 -2.19 16 21 C -0.19 -1.72 10.36 -26.72 -0.28 -2.00 16 22 C 0.64 10.40 8.74 53.71 0.47 10.87 16 23 O -0.52 -9.95 14.65 -19.11 -0.28 -10.23 16 24 O -0.30 -5.09 10.79 -37.82 -0.41 -5.50 16 25 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.04 0.97 3.27 -51.92 -0.17 0.80 16 27 H 0.03 0.51 6.20 -51.93 -0.32 0.19 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 1.84 6.10 -51.93 -0.32 1.52 16 31 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.09 1.37 5.83 -51.93 -0.30 1.07 16 34 H 0.09 0.70 7.73 -51.93 -0.40 0.30 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.13 1.83 5.34 -51.93 -0.28 1.56 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -33.19 310.99 -7.08 -40.28 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.73 Total: -0.43 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.32 Total: -0.79 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.88 Total: -45.54 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.69 Total: -15.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.19 -7.08 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844304814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.004 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds