Wall clock time and date at job start Mon Mar 30 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00583 * 2 1 3 5 5 H 1.08004 * 119.99749 * 119.99503 * 4 2 1 6 6 C 1.37871 * 119.99826 * 299.99951 * 4 2 1 7 7 N 1.31522 * 120.00048 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00245 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47236 * 89.99890 * 8 6 4 10 10 H 1.48499 * 109.47275 * 209.99925 * 8 6 4 11 11 H 1.48500 * 109.46915 * 329.99843 * 8 6 4 12 12 N 1.46906 * 109.46957 * 240.00443 * 2 1 3 13 13 C 1.46900 * 111.00145 * 183.95264 * 12 2 1 14 14 C 1.46904 * 110.99620 * 60.00304 * 12 2 1 15 15 C 1.53006 * 109.46673 * 190.00005 * 14 12 2 16 16 H 1.08993 * 110.46875 * 307.62812 * 15 14 12 17 17 C 1.54089 * 110.51731 * 184.99869 * 15 14 12 18 18 N 1.47092 * 103.77657 * 241.36838 * 17 15 14 19 19 C 1.46498 * 125.56208 * 180.02562 * 18 17 15 20 20 C 1.53004 * 117.50220 * 188.62078 * 19 18 17 21 21 C 1.53005 * 60.00158 * 252.51154 * 20 19 18 22 22 C 1.34009 * 108.88294 * 0.02562 * 18 17 15 23 23 O 1.21507 * 123.07186 * 179.97438 * 22 18 17 24 24 O 1.33766 * 113.85232 * 0.02562 * 22 18 17 25 25 H 1.08994 * 109.47902 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46931 * 299.99824 * 1 2 3 27 27 H 1.09003 * 109.47387 * 59.99263 * 1 2 3 28 28 H 0.96999 * 120.00110 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47267 * 296.04846 * 13 12 2 30 30 H 1.09004 * 109.46910 * 56.04737 * 13 12 2 31 31 H 1.08998 * 109.47187 * 176.04785 * 13 12 2 32 32 H 1.08992 * 109.47335 * 70.00243 * 14 12 2 33 33 H 1.08997 * 109.46819 * 309.99878 * 14 12 2 34 34 H 1.08999 * 110.56802 * 359.93863 * 17 15 14 35 35 H 1.09001 * 110.56598 * 122.79637 * 17 15 14 36 36 H 1.08996 * 115.55058 * 334.33592 * 19 18 17 37 37 H 1.08998 * 117.49655 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.49938 * 145.02236 * 20 19 18 39 39 H 1.08996 * 117.49802 * 252.50723 * 21 20 19 40 40 H 1.08993 * 117.51302 * 107.47839 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1374 -0.8599 3.5564 8 14 0.6260 1.2796 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9773 1.9949 3.9072 11 1 0.8492 2.1772 1.4925 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7945 -1.1872 14 6 1.5485 -0.0261 -2.4211 15 6 1.8625 -0.9040 -3.6343 16 1 2.9157 -1.1846 -3.6393 17 6 1.4918 -0.1740 -4.9396 18 7 0.4654 -1.0370 -5.5442 19 6 -0.2201 -0.7844 -6.8140 20 6 -1.3976 -1.6925 -7.1742 21 6 -0.0685 -1.8316 -7.9193 22 6 0.2596 -2.0920 -4.7440 23 8 -0.5399 -2.9710 -4.9981 24 8 1.0141 -2.0885 -3.6394 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.9034 -0.5284 4.4375 29 1 3.9191 0.2043 -1.2301 30 1 3.8069 -1.2916 -0.2721 31 1 3.8162 -1.3720 -2.0503 32 1 2.0518 0.9348 -2.5280 33 1 0.4722 0.1327 -2.3563 34 1 1.0831 0.8131 -4.7236 35 1 2.3598 -0.0952 -5.5942 36 1 -0.2796 0.2612 -7.1162 37 1 -1.6625 -2.4777 -6.4661 38 1 -2.2323 -1.2444 -7.7133 39 1 -0.0288 -1.4750 -8.9485 40 1 0.5414 -2.7082 -7.7016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844304814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:49 Heat of formation + Delta-G solvation = -35.569066 kcal Electronic energy + Delta-G solvation = -21255.590804 eV Core-core repulsion = 18071.918823 eV Total energy + Delta-G solvation = -3183.671981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.68895 -39.42151 -38.44377 -37.74158 -34.92312 -34.69089 -32.58249 -31.01692 -28.13189 -26.37014 -25.35788 -24.86455 -23.43707 -23.10116 -21.59219 -20.81443 -18.94288 -18.52637 -17.98362 -17.53273 -16.91921 -16.74344 -16.13882 -15.79128 -15.37189 -15.20082 -15.06462 -14.67639 -14.44552 -14.22368 -13.99194 -13.76948 -13.58497 -13.10240 -12.71689 -12.64547 -12.58685 -12.38320 -12.33516 -12.09002 -12.03550 -11.46303 -11.41924 -11.32358 -11.22190 -11.01119 -10.73277 -9.68013 -8.96171 -8.27564 -6.31169 1.31540 1.34160 1.43151 1.45297 1.58113 2.31947 2.48306 2.84720 2.97379 3.07021 3.45654 3.59956 3.70205 3.92698 4.00590 4.07231 4.31746 4.43458 4.45008 4.49653 4.53314 4.61190 4.62610 4.75240 4.80640 4.84656 4.88535 4.95638 5.03847 5.09035 5.28927 5.29790 5.42446 5.58433 5.64172 6.00279 6.34491 6.42246 6.69375 6.76649 6.96531 7.33556 8.88912 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035931 B = 0.004343 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.080865 B = 6446.153752 C = 6605.291214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 H 0.003 0.997 4 C -0.508 4.508 5 H 0.041 0.959 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.298 1.298 11 H -0.243 1.243 12 N -0.546 5.546 13 C 0.036 3.964 14 C 0.039 3.961 15 C 0.072 3.928 16 H 0.131 0.869 17 C 0.082 3.918 18 N -0.601 5.601 19 C 0.098 3.902 20 C -0.206 4.206 21 C -0.181 4.181 22 C 0.629 3.371 23 O -0.570 6.570 24 O -0.335 6.335 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.265 0.735 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.178 0.822 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 8.670 -24.537 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.080 3.920 3 H 0.021 0.979 4 C -0.547 4.547 5 H 0.059 0.941 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.226 1.226 11 H -0.167 1.167 12 N -0.271 5.271 13 C -0.112 4.112 14 C -0.089 4.089 15 C 0.017 3.983 16 H 0.149 0.851 17 C -0.040 4.040 18 N -0.346 5.346 19 C -0.003 4.003 20 C -0.243 4.243 21 C -0.219 4.219 22 C 0.384 3.616 23 O -0.459 6.459 24 O -0.244 6.244 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.195 0.805 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.797 7.604 -24.269 25.495 hybrid contribution -0.057 0.657 1.119 1.299 sum -1.854 8.261 -23.149 24.649 Atomic orbital electron populations 1.22136 0.97503 1.00870 0.99526 1.19489 0.92156 0.92067 0.88320 0.97944 1.21269 1.30875 1.12370 0.90161 0.94087 1.25810 0.97390 1.00131 0.95364 1.70044 1.47879 1.42562 0.98571 0.85839 0.78947 0.80013 0.77488 1.19799 1.22619 1.16657 1.61764 1.11074 1.52787 1.01462 1.22281 0.86976 0.99987 1.01955 1.22628 1.02111 0.95442 0.88756 1.24248 0.95961 0.82618 0.95490 0.85150 1.23130 0.93101 0.95456 0.92357 1.47588 1.41946 1.23025 1.22079 1.21856 0.98644 0.98622 0.81216 1.23695 0.93265 1.03445 1.03933 1.23418 0.99513 1.00698 0.98305 1.19032 0.80404 0.82780 0.79339 1.90867 1.38141 1.41658 1.75232 1.87468 1.52034 1.45419 1.39513 0.93797 0.94603 0.91694 0.92591 0.95110 0.93518 0.90280 0.89859 0.90345 0.86077 0.85095 0.80494 0.89099 0.85782 0.84784 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.05 8.47 71.98 0.61 -5.44 16 2 C 0.19 8.47 1.65 44.17 0.07 8.54 16 3 H 0.00 0.14 7.20 -2.39 -0.02 0.12 16 4 C -0.51 -28.80 8.46 25.60 0.22 -28.58 16 5 H 0.04 2.61 6.65 -2.91 -0.02 2.59 16 6 C 0.01 0.58 5.45 84.65 0.46 1.04 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.95 44.39 24.37 68.60 1.67 46.06 16 9 H -0.27 -12.33 6.87 99.48 0.68 -11.65 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.24 -10.19 6.53 99.48 0.65 -9.54 16 12 N -0.55 -20.93 4.62 -901.46 -4.17 -25.10 16 13 C 0.04 1.24 9.06 127.69 1.16 2.40 16 14 C 0.04 1.03 4.31 86.30 0.37 1.40 16 15 C 0.07 1.61 3.83 30.96 0.12 1.73 16 16 H 0.13 2.48 6.31 -2.39 -0.02 2.46 16 17 C 0.08 1.08 7.34 86.63 0.64 1.72 16 18 N -0.60 -12.42 3.30 -927.35 -3.06 -15.48 16 19 C 0.10 1.49 6.95 45.00 0.31 1.80 16 20 C -0.21 -3.93 9.78 30.60 0.30 -3.63 16 21 C -0.18 -2.79 10.36 30.60 0.32 -2.48 16 22 C 0.63 20.15 8.74 129.91 1.13 21.28 16 23 O -0.57 -22.46 14.65 19.66 0.29 -22.17 16 24 O -0.33 -11.26 10.79 -47.26 -0.51 -11.77 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.55 3.27 -2.38 -0.01 1.54 16 27 H 0.06 2.23 6.20 -2.39 -0.01 2.22 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 2.00 6.10 -2.38 -0.01 1.99 16 31 H 0.08 2.18 6.34 -2.39 -0.02 2.17 16 32 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 33 H 0.08 2.22 5.83 -2.39 -0.01 2.21 16 34 H 0.12 1.02 7.73 -2.39 -0.02 1.00 16 35 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.18 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 2.61 5.34 -2.39 -0.01 2.60 16 38 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -79.05 310.99 1.19 -77.86 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.96 Total: 10.20 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.71 Total: -0.22 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -6.93 Total: -99.96 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.22 Total: -33.94 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.06 kcal Total: -79.05 1.19 -77.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844304814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.290 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds