Wall clock time and date at job start Mon Mar 30 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47200 * 265.68539 * 3 2 1 5 5 H 1.48505 * 109.47263 * 25.68661 * 3 2 1 6 6 H 1.48504 * 109.47270 * 145.68773 * 3 2 1 7 7 C 1.37879 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99877 * 351.48470 * 7 2 1 9 9 C 1.50691 * 119.99788 * 171.48492 * 7 2 1 10 10 N 1.46911 * 109.47199 * 144.77811 * 9 7 2 11 11 C 1.46849 * 110.99672 * 298.86082 * 10 9 7 12 12 C 1.53031 * 109.52375 * 185.84042 * 11 10 9 13 13 C 1.53124 * 109.27734 * 300.81663 * 12 11 10 14 14 C 1.53128 * 109.15628 * 57.65620 * 13 12 11 15 15 C 1.46842 * 110.99766 * 63.06418 * 10 9 7 16 16 H 1.08991 * 109.46885 * 294.18088 * 15 10 9 17 17 C 1.53004 * 109.46286 * 54.15376 * 15 10 9 18 18 N 1.46903 * 109.46828 * 286.31273 * 17 15 10 19 19 C 1.47015 * 110.99671 * 286.15096 * 18 17 15 20 20 C 1.53102 * 109.25766 * 177.60425 * 19 18 17 21 21 O 1.43020 * 109.25658 * 56.84886 * 20 19 18 22 22 C 1.43015 * 113.73751 * 301.33319 * 21 20 19 23 23 C 1.47006 * 111.00053 * 162.51476 * 18 17 15 24 24 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47272 * 264.77150 * 9 7 2 26 26 H 1.08998 * 109.47760 * 24.77455 * 9 7 2 27 27 H 1.09009 * 109.45830 * 305.85202 * 11 10 9 28 28 H 1.08996 * 109.46493 * 65.81473 * 11 10 9 29 29 H 1.09005 * 109.50295 * 60.75689 * 12 11 10 30 30 H 1.08997 * 109.50518 * 180.87955 * 12 11 10 31 31 H 1.08995 * 109.52401 * 177.55536 * 13 12 11 32 32 H 1.08993 * 109.51949 * 297.68509 * 13 12 11 33 33 H 1.08992 * 109.50143 * 62.28801 * 14 13 12 34 34 H 1.09000 * 109.49863 * 182.36680 * 14 13 12 35 35 H 1.08992 * 109.47037 * 46.30837 * 17 15 10 36 36 H 1.09001 * 109.46936 * 166.31557 * 17 15 10 37 37 H 1.08992 * 109.51005 * 297.53964 * 19 18 17 38 38 H 1.08998 * 109.50887 * 57.67506 * 19 18 17 39 39 H 1.08998 * 109.50709 * 296.91796 * 20 19 18 40 40 H 1.08999 * 109.50928 * 176.77768 * 20 19 18 41 41 H 1.09001 * 109.50719 * 298.73035 * 22 21 20 42 42 H 1.08997 * 109.54256 * 178.62337 * 22 21 20 43 43 H 1.08995 * 109.51001 * 302.32513 * 23 18 17 44 44 H 1.09004 * 109.50595 * 62.45996 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5878 1.9937 -1.3961 5 1 1.4039 2.6773 0.6069 6 1 3.4982 1.4682 0.7892 7 6 2.0046 -1.1941 0.0005 8 1 1.4735 -2.1242 0.1394 9 6 3.4990 -1.2013 -0.1927 10 7 4.0926 -2.2725 0.6188 11 6 3.8261 -2.0598 2.0471 12 6 4.5782 -3.1085 2.8695 13 6 4.1179 -4.5068 2.4480 14 6 4.3620 -4.6850 0.9468 15 6 3.6160 -3.5904 0.1803 16 1 2.5471 -3.6738 0.3762 17 6 3.8734 -3.7525 -1.3192 18 7 2.9173 -2.9294 -2.0719 19 6 1.5748 -3.5281 -2.0494 20 6 0.6002 -2.6105 -2.7925 21 8 1.0756 -2.3970 -4.1243 22 6 2.3805 -1.8145 -4.1834 23 6 3.3731 -2.7240 -3.4544 24 1 -0.4850 0.8400 0.0004 25 1 3.7286 -1.3726 -1.2444 26 1 3.9102 -0.2405 0.1171 27 1 4.1620 -1.0634 2.3348 28 1 2.7561 -2.1502 2.2344 29 1 5.6494 -3.0095 2.6932 30 1 4.3678 -2.9601 3.9286 31 1 4.6822 -5.2580 3.0004 32 1 3.0550 -4.6199 2.6612 33 1 5.4296 -4.6108 0.7405 34 1 3.9976 -5.6630 0.6325 35 1 4.8892 -3.4322 -1.5502 36 1 3.7501 -4.7991 -1.5979 37 1 1.6023 -4.5019 -2.5382 38 1 1.2467 -3.6475 -1.0169 39 1 0.5321 -1.6548 -2.2728 40 1 -0.3841 -3.0773 -2.8279 41 1 2.3641 -0.8356 -3.7042 42 1 2.6841 -1.7050 -5.2245 43 1 4.3577 -2.2566 -3.4474 44 1 3.4293 -3.6851 -3.9657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109819084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:51 Heat of formation + Delta-G solvation = -24.032377 kcal Electronic energy + Delta-G solvation = -23196.225069 eV Core-core repulsion = 20148.886450 eV Total energy + Delta-G solvation = -3047.338618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43189 -38.03364 -35.10166 -33.38673 -31.68550 -31.05307 -30.47047 -27.57360 -26.82657 -24.25342 -23.42675 -23.03601 -21.32777 -20.34064 -19.75500 -18.83114 -16.64796 -15.89874 -15.57425 -15.07997 -14.98271 -14.45224 -14.24384 -13.96730 -13.82308 -13.58845 -13.38082 -12.97563 -12.55948 -12.23277 -11.98414 -11.86012 -11.53076 -11.35492 -11.20721 -10.88638 -10.84496 -10.70464 -10.49344 -10.29383 -10.01206 -9.89812 -9.84722 -9.68976 -9.48171 -9.14101 -8.97945 -8.36491 -7.38360 -6.95742 -5.93674 -3.83856 3.36801 3.44921 3.47540 4.32494 4.48380 4.54394 4.92913 5.29815 5.37011 5.41653 5.43175 5.51677 5.54366 5.64225 5.70458 5.84041 5.85193 5.93933 6.00717 6.04333 6.12258 6.15310 6.19689 6.26810 6.35232 6.37289 6.40054 6.41284 6.57790 6.58051 6.73307 6.86750 6.93769 7.03291 7.12929 7.58573 7.63740 7.69563 7.80677 7.86448 8.33981 8.41937 8.70227 9.11929 9.73813 11.19565 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.010736 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.823686 B = 2607.324693 C = 3889.657097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.066 3.934 3 Si 0.869 3.131 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.137 3.863 10 N -0.530 5.530 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.111 4.111 15 C 0.095 3.905 16 H 0.050 0.950 17 C 0.067 3.933 18 N -0.496 5.496 19 C 0.038 3.962 20 C 0.060 3.940 21 O -0.398 6.398 22 C 0.067 3.933 23 C 0.020 3.980 24 H 0.257 0.743 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.016 0.984 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 -7.630 -1.959 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.011 3.989 10 N -0.254 5.254 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.014 4.014 16 H 0.067 0.933 17 C -0.061 4.061 18 N -0.220 5.220 19 C -0.090 4.090 20 C -0.016 4.016 21 O -0.317 6.317 22 C -0.010 4.010 23 C -0.108 4.108 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.502 -7.080 -1.978 10.503 hybrid contribution -0.354 0.260 0.082 0.447 sum 7.148 -6.819 -1.897 10.060 Atomic orbital electron populations 1.69919 1.06007 1.26296 1.52656 1.24962 0.94545 0.98391 0.95476 0.86950 0.80013 0.84707 0.78446 1.20730 1.22353 1.19454 1.21517 0.91724 0.93883 1.46445 0.90972 1.20692 0.93621 0.88894 0.95673 1.62550 1.58141 1.02207 1.02535 1.21804 0.98494 0.96992 0.89180 1.21627 1.00418 0.95002 0.98421 1.21501 1.00737 0.97044 0.95995 1.21616 1.00795 0.97464 0.95103 1.21377 0.97607 0.90304 0.92141 0.93260 1.22116 0.96269 0.93617 0.94108 1.62535 1.01575 1.47312 1.10609 1.22633 0.90256 0.94414 1.01686 1.22774 0.95151 1.01832 0.81825 1.87847 1.32473 1.82937 1.28412 1.22523 0.82660 0.96464 0.99329 1.22732 0.99349 0.98699 0.90043 0.93271 0.91311 0.96440 0.92365 0.93840 0.92184 0.92829 0.92997 0.92527 0.91929 0.92923 0.90826 0.95705 0.96542 0.89320 0.88537 0.90067 0.91957 0.89826 0.90364 0.95419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.07 1.79 5.47 -17.82 -0.10 1.69 16 3 Si 0.87 21.41 27.31 -169.99 -4.64 16.76 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.53 6.39 56.52 0.36 -6.17 16 7 C -0.50 -12.51 5.81 -34.44 -0.20 -12.71 16 8 H 0.07 1.97 4.88 -52.49 -0.26 1.72 16 9 C 0.14 3.11 4.61 -4.97 -0.02 3.09 16 10 N -0.53 -10.56 4.69 -228.12 -1.07 -11.63 16 11 C 0.06 1.24 5.07 -3.84 -0.02 1.22 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.12 -1.67 6.00 -26.60 -0.16 -1.83 16 14 C -0.11 -1.66 5.33 -26.64 -0.14 -1.80 16 15 C 0.10 1.70 1.77 -67.72 -0.12 1.58 16 16 H 0.05 1.02 5.06 -51.93 -0.26 0.76 16 17 C 0.07 1.12 4.06 -3.82 -0.02 1.10 16 18 N -0.50 -9.00 1.07 -234.31 -0.25 -9.25 16 19 C 0.04 0.71 4.52 -3.71 -0.02 0.69 16 20 C 0.06 1.20 7.01 37.21 0.26 1.46 16 21 O -0.40 -7.63 10.83 -35.23 -0.38 -8.01 16 22 C 0.07 1.14 7.01 37.21 0.26 1.40 16 23 C 0.02 0.33 5.35 -3.71 -0.02 0.31 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.07 1.56 5.04 -51.93 -0.26 1.29 16 26 H 0.02 0.43 4.96 -51.93 -0.26 0.17 16 27 H 0.06 1.18 8.12 -51.92 -0.42 0.76 16 28 H 0.04 0.96 7.33 -51.93 -0.38 0.57 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 36 H 0.02 0.38 7.95 -51.93 -0.41 -0.03 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 1.80 5.26 -51.93 -0.27 1.53 16 39 H 0.10 2.30 7.46 -51.93 -0.39 1.91 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 44 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -27.63 316.42 -8.82 -36.46 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.57 Total: 2.05 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.45 Total: -5.79 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.55 Total: -46.24 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.38 Total: -8.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.64 Total: 16.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.63 -8.82 -36.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109819084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.425 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds