Wall clock time and date at job start Mon Mar 30 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47200 * 265.68539 * 3 2 1 5 5 H 1.48505 * 109.47263 * 25.68661 * 3 2 1 6 6 H 1.48504 * 109.47270 * 145.68773 * 3 2 1 7 7 C 1.37879 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99877 * 351.48470 * 7 2 1 9 9 C 1.50691 * 119.99788 * 171.48492 * 7 2 1 10 10 N 1.46911 * 109.47199 * 144.77811 * 9 7 2 11 11 C 1.46849 * 110.99672 * 298.86082 * 10 9 7 12 12 C 1.53031 * 109.52375 * 185.84042 * 11 10 9 13 13 C 1.53124 * 109.27734 * 300.81663 * 12 11 10 14 14 C 1.53128 * 109.15628 * 57.65620 * 13 12 11 15 15 C 1.46842 * 110.99766 * 63.06418 * 10 9 7 16 16 H 1.08991 * 109.46885 * 294.18088 * 15 10 9 17 17 C 1.53004 * 109.46286 * 54.15376 * 15 10 9 18 18 N 1.46903 * 109.46828 * 286.31273 * 17 15 10 19 19 C 1.47015 * 110.99671 * 286.15096 * 18 17 15 20 20 C 1.53102 * 109.25766 * 177.60425 * 19 18 17 21 21 O 1.43020 * 109.25658 * 56.84886 * 20 19 18 22 22 C 1.43015 * 113.73751 * 301.33319 * 21 20 19 23 23 C 1.47006 * 111.00053 * 162.51476 * 18 17 15 24 24 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47272 * 264.77150 * 9 7 2 26 26 H 1.08998 * 109.47760 * 24.77455 * 9 7 2 27 27 H 1.09009 * 109.45830 * 305.85202 * 11 10 9 28 28 H 1.08996 * 109.46493 * 65.81473 * 11 10 9 29 29 H 1.09005 * 109.50295 * 60.75689 * 12 11 10 30 30 H 1.08997 * 109.50518 * 180.87955 * 12 11 10 31 31 H 1.08995 * 109.52401 * 177.55536 * 13 12 11 32 32 H 1.08993 * 109.51949 * 297.68509 * 13 12 11 33 33 H 1.08992 * 109.50143 * 62.28801 * 14 13 12 34 34 H 1.09000 * 109.49863 * 182.36680 * 14 13 12 35 35 H 1.08992 * 109.47037 * 46.30837 * 17 15 10 36 36 H 1.09001 * 109.46936 * 166.31557 * 17 15 10 37 37 H 1.08992 * 109.51005 * 297.53964 * 19 18 17 38 38 H 1.08998 * 109.50887 * 57.67506 * 19 18 17 39 39 H 1.08998 * 109.50709 * 296.91796 * 20 19 18 40 40 H 1.08999 * 109.50928 * 176.77768 * 20 19 18 41 41 H 1.09001 * 109.50719 * 298.73035 * 22 21 20 42 42 H 1.08997 * 109.54256 * 178.62337 * 22 21 20 43 43 H 1.08995 * 109.51001 * 302.32513 * 23 18 17 44 44 H 1.09004 * 109.50595 * 62.45996 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5878 1.9937 -1.3961 5 1 1.4039 2.6773 0.6069 6 1 3.4982 1.4682 0.7892 7 6 2.0046 -1.1941 0.0005 8 1 1.4735 -2.1242 0.1394 9 6 3.4990 -1.2013 -0.1927 10 7 4.0926 -2.2725 0.6188 11 6 3.8261 -2.0598 2.0471 12 6 4.5782 -3.1085 2.8695 13 6 4.1179 -4.5068 2.4480 14 6 4.3620 -4.6850 0.9468 15 6 3.6160 -3.5904 0.1803 16 1 2.5471 -3.6738 0.3762 17 6 3.8734 -3.7525 -1.3192 18 7 2.9173 -2.9294 -2.0719 19 6 1.5748 -3.5281 -2.0494 20 6 0.6002 -2.6105 -2.7925 21 8 1.0756 -2.3970 -4.1243 22 6 2.3805 -1.8145 -4.1834 23 6 3.3731 -2.7240 -3.4544 24 1 -0.4850 0.8400 0.0004 25 1 3.7286 -1.3726 -1.2444 26 1 3.9102 -0.2405 0.1171 27 1 4.1620 -1.0634 2.3348 28 1 2.7561 -2.1502 2.2344 29 1 5.6494 -3.0095 2.6932 30 1 4.3678 -2.9601 3.9286 31 1 4.6822 -5.2580 3.0004 32 1 3.0550 -4.6199 2.6612 33 1 5.4296 -4.6108 0.7405 34 1 3.9976 -5.6630 0.6325 35 1 4.8892 -3.4322 -1.5502 36 1 3.7501 -4.7991 -1.5979 37 1 1.6023 -4.5019 -2.5382 38 1 1.2467 -3.6475 -1.0169 39 1 0.5321 -1.6548 -2.2728 40 1 -0.3841 -3.0773 -2.8279 41 1 2.3641 -0.8356 -3.7042 42 1 2.6841 -1.7050 -5.2245 43 1 4.3577 -2.2566 -3.4474 44 1 3.4293 -3.6851 -3.9657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109819084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:51 Heat of formation + Delta-G solvation = -41.764018 kcal Electronic energy + Delta-G solvation = -23196.993970 eV Core-core repulsion = 20148.886450 eV Total energy + Delta-G solvation = -3048.107520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89674 -39.50380 -36.52598 -35.14654 -33.49701 -32.44609 -31.93511 -29.21427 -28.42114 -25.80736 -24.89032 -24.54027 -22.94189 -21.77331 -21.18218 -20.40329 -18.56680 -17.37118 -17.05186 -16.66363 -16.53505 -15.90977 -15.89198 -15.55267 -15.27043 -15.04637 -14.77646 -14.53622 -14.33568 -13.84262 -13.42865 -13.37813 -13.11887 -12.80289 -12.77623 -12.59744 -12.34382 -12.23045 -12.00748 -11.69776 -11.60169 -11.50544 -11.40420 -11.27282 -11.13880 -10.84072 -10.60804 -10.35399 -8.83242 -8.65955 -8.06367 -5.96344 1.36367 1.40286 1.46550 2.47467 2.93204 3.07022 3.23779 3.56035 3.99821 4.09793 4.11370 4.15888 4.20789 4.24831 4.35385 4.41956 4.51256 4.60347 4.62847 4.70534 4.75373 4.80948 4.85209 4.95417 4.97926 4.99816 5.05677 5.10285 5.18386 5.21227 5.27133 5.31041 5.37348 5.41027 5.61757 5.79726 5.90059 6.19374 6.29023 6.33558 6.50475 6.65072 6.77355 7.04011 7.62747 9.09173 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.010736 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.823686 B = 2607.324693 C = 3889.657097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.045 0.955 9 C 0.144 3.856 10 N -0.524 5.524 11 C 0.063 3.937 12 C -0.108 4.108 13 C -0.114 4.114 14 C -0.105 4.105 15 C 0.094 3.906 16 H 0.014 0.986 17 C 0.071 3.929 18 N -0.523 5.523 19 C 0.051 3.949 20 C 0.068 3.932 21 O -0.404 6.404 22 C 0.062 3.938 23 C 0.024 3.976 24 H 0.252 0.748 25 H 0.077 0.923 26 H 0.005 0.995 27 H 0.045 0.955 28 H 0.007 0.993 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.076 -9.283 -2.476 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.182 4.182 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.017 3.983 10 N -0.248 5.248 11 C -0.065 4.065 12 C -0.146 4.146 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.015 4.015 16 H 0.032 0.968 17 C -0.057 4.057 18 N -0.247 5.247 19 C -0.077 4.077 20 C -0.009 4.009 21 O -0.323 6.323 22 C -0.015 4.015 23 C -0.103 4.103 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.137 0.863 43 H 0.114 0.886 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.334 -8.745 -2.494 13.766 hybrid contribution -1.228 0.720 0.230 1.442 sum 9.106 -8.025 -2.265 12.348 Atomic orbital electron populations 1.70054 1.07386 1.26372 1.55419 1.25548 0.95029 1.01192 0.96453 0.86149 0.79019 0.81551 0.78550 1.20222 1.23160 1.18598 1.21585 0.92954 0.92361 1.43421 0.93652 1.20569 0.91537 0.89524 0.96671 1.62553 1.57270 1.02540 1.02405 1.21828 0.96887 0.98114 0.89703 1.21563 1.00372 0.94222 0.98414 1.21517 1.00375 0.97040 0.96241 1.21588 1.01066 0.96898 0.94742 1.21486 0.96063 0.90052 0.93910 0.96769 1.22114 0.96191 0.94603 0.92748 1.62406 1.01633 1.48246 1.12438 1.22377 0.90467 0.94823 0.99997 1.22544 0.96368 0.99825 0.82138 1.87835 1.33914 1.83040 1.27546 1.22740 0.82021 0.95257 1.01441 1.22753 0.99544 0.99380 0.88665 0.93901 0.90502 0.97744 0.93643 0.97498 0.90862 0.91374 0.89816 0.93959 0.90515 0.90980 0.89703 0.93660 0.94673 0.91869 0.93205 0.89274 0.94689 0.86252 0.88611 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 13.96 21.45 0.30 -57.01 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.92 45.16 27.31 68.60 1.87 47.04 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 6 H -0.26 -12.36 6.39 99.48 0.64 -11.73 16 7 C -0.46 -24.18 5.81 25.60 0.15 -24.03 16 8 H 0.05 2.62 4.88 -2.91 -0.01 2.60 16 9 C 0.14 6.52 4.61 85.55 0.39 6.92 16 10 N -0.52 -20.42 4.69 -875.65 -4.11 -24.53 16 11 C 0.06 2.46 5.07 86.32 0.44 2.90 16 12 C -0.11 -3.11 6.09 30.65 0.19 -2.93 16 13 C -0.11 -2.98 6.00 30.68 0.18 -2.79 16 14 C -0.10 -2.77 5.33 30.65 0.16 -2.61 16 15 C 0.09 3.24 1.77 44.94 0.08 3.32 16 16 H 0.01 0.60 5.06 -2.39 -0.01 0.59 16 17 C 0.07 2.19 4.06 86.30 0.35 2.54 16 18 N -0.52 -18.32 1.07 -895.23 -0.96 -19.28 16 19 C 0.05 1.91 4.52 86.32 0.39 2.30 16 20 C 0.07 2.76 7.01 72.02 0.50 3.27 16 21 O -0.40 -15.29 10.83 -148.98 -1.61 -16.91 16 22 C 0.06 2.01 7.01 72.02 0.50 2.51 16 23 C 0.02 0.72 5.35 86.32 0.46 1.18 16 24 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.08 3.41 5.04 -2.39 -0.01 3.40 16 26 H 0.00 0.22 4.96 -2.39 -0.01 0.21 16 27 H 0.04 1.84 8.12 -2.38 -0.02 1.82 16 28 H 0.01 0.31 7.33 -2.39 -0.02 0.29 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 2.45 7.90 -2.39 -0.02 2.43 16 36 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 2.67 5.26 -2.39 -0.01 2.66 16 39 H 0.05 2.50 7.46 -2.39 -0.02 2.49 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.10 2.50 8.03 -2.39 -0.02 2.48 16 44 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -62.13 316.42 0.66 -61.47 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.89 Total: 15.44 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.27 Total: -6.23 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -4.77 Total: -100.81 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.61 Total: -16.91 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.87 Total: 47.04 kcal Total: -62.13 0.66 -61.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109819084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.710 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds