Wall clock time and date at job start Mon Mar 30 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99586 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 9 9 N 1.46896 * 109.47053 * 180.02562 * 7 6 5 10 10 C 1.46903 * 110.99908 * 274.99684 * 9 7 6 11 11 C 1.50697 * 109.47337 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00235 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00129 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00134 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47306 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99853 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99718 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46779 * 60.00108 * 19 17 15 21 21 H 1.48497 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47078 * 300.00295 * 19 17 15 23 23 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 24 24 H 1.09001 * 109.47142 * 300.00180 * 1 2 3 25 25 H 1.08996 * 109.46698 * 60.00234 * 1 2 3 26 26 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47261 * 299.99422 * 3 2 1 29 29 H 1.09001 * 109.47377 * 59.99963 * 3 2 1 30 30 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 31 31 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 32 32 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 34 34 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 35 35 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 36 36 H 1.00895 * 111.00219 * 151.04779 * 9 7 6 37 37 H 1.09003 * 109.46856 * 300.00136 * 10 9 7 38 38 H 1.09001 * 109.47072 * 60.00127 * 10 9 7 39 39 H 0.96999 * 119.99756 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46612 * 300.00172 * 14 13 11 41 41 H 1.09002 * 109.47257 * 59.99719 * 14 13 11 42 42 H 0.97001 * 120.00041 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47853 * 180.02562 * 23 7 6 44 44 H 1.09002 * 109.47153 * 300.00319 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0005 7 6 3.5706 -0.7204 -1.2488 8 1 3.9336 0.3074 -1.2486 9 7 4.0602 -1.4129 -2.4482 10 6 5.4076 -0.9520 -2.8090 11 6 5.8757 -1.6835 -4.0406 12 8 5.1575 -2.5072 -4.5664 13 7 7.0921 -1.4215 -4.5585 14 6 7.5470 -2.1321 -5.7562 15 6 8.9292 -1.6594 -6.1263 16 1 9.4197 -0.9048 -5.5293 17 6 9.5676 -2.1904 -7.2269 18 7 8.9706 -3.1096 -7.9535 19 14 11.2808 -1.6038 -7.6860 20 1 12.2144 -1.8759 -6.5637 21 1 11.7423 -2.3252 -8.8992 22 1 11.2476 -0.1447 -7.9597 23 6 2.0406 -0.7209 -1.2492 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 1.2494 31 1 1.6766 -0.2073 2.1393 32 1 3.9333 -1.2340 2.1399 33 1 3.9329 0.3072 1.2498 34 1 3.7176 -2.4693 0.0003 35 1 5.1706 -1.4408 0.0005 36 1 3.4200 -1.2972 -3.2193 37 1 5.3837 0.1192 -3.0092 38 1 6.0929 -1.1525 -1.9854 39 1 7.6664 -0.7624 -4.1382 40 1 7.5712 -3.2033 -5.5557 41 1 6.8615 -1.9321 -6.5797 42 1 9.4200 -3.4834 -8.7276 43 1 1.6772 -0.2075 -2.1394 44 1 1.6776 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149858747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:07 Heat of formation + Delta-G solvation = -69.716359 kcal Electronic energy + Delta-G solvation = -20628.010438 eV Core-core repulsion = 17578.690814 eV Total energy + Delta-G solvation = -3049.319624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96786 -38.66926 -35.45583 -34.09375 -32.70567 -32.29701 -30.07596 -27.63085 -27.51505 -26.56702 -25.23728 -22.46458 -22.28865 -20.64637 -19.67629 -18.59865 -17.20531 -16.02655 -15.59080 -15.42250 -15.21310 -14.93699 -14.74496 -14.37608 -14.15455 -13.86775 -13.36235 -13.13527 -12.87994 -12.59085 -12.39279 -12.18313 -12.09454 -11.88964 -11.66427 -11.52801 -11.43170 -11.20752 -11.11010 -10.99255 -10.85075 -10.56819 -10.30652 -10.28920 -10.12122 -9.39733 -8.98631 -8.71670 -8.30423 -7.83857 -6.15249 -4.22313 3.25798 3.30495 3.32044 3.42735 3.80797 4.29187 4.43207 4.45393 4.46726 4.70824 4.95777 5.02670 5.13330 5.16564 5.20571 5.24658 5.30916 5.42247 5.44066 5.45688 5.49420 5.56208 5.62187 5.66410 5.72342 5.77424 5.81659 5.87128 5.94657 6.07707 6.11241 6.15674 6.17385 6.37600 7.03515 7.34369 7.46070 7.49133 7.54497 7.69265 7.99011 8.66254 8.80572 9.15110 9.44467 10.94958 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044627 B = 0.002911 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.271720 B = 9616.812380 C = 9789.320132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.108 4.108 7 C 0.088 3.912 8 H 0.045 0.955 9 N -0.669 5.669 10 C 0.041 3.959 11 C 0.496 3.504 12 O -0.544 6.544 13 N -0.715 5.715 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.350 0.650 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.061 0.939 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 8.981 18.703 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.022 4.022 8 H 0.063 0.937 9 N -0.302 5.302 10 C -0.092 4.092 11 C 0.280 3.720 12 O -0.422 6.422 13 N -0.364 5.364 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.170 0.830 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.606 7.697 18.450 24.182 hybrid contribution 1.115 1.455 -0.528 1.907 sum -12.491 9.152 17.922 23.686 Atomic orbital electron populations 1.21860 0.94592 1.01804 1.01590 1.20500 0.95180 0.95415 0.95174 1.21999 1.01549 0.95336 1.01469 1.21600 0.95677 1.00444 0.96803 1.21590 0.95562 1.00806 0.97960 1.21544 1.00331 1.00021 0.92756 1.21583 0.94308 0.95423 0.90886 0.93693 1.60121 1.02752 1.59755 1.07576 1.21878 0.92736 0.97112 0.97436 1.20383 0.82597 0.83736 0.85279 1.90660 1.55098 1.34519 1.61899 1.46450 1.16267 1.42641 1.31090 1.19076 0.94269 0.92461 0.81164 1.21197 1.00663 1.23892 1.12475 0.91980 1.24953 0.98435 0.94765 0.95868 1.69963 1.38049 1.26977 1.17310 0.86475 0.83628 0.78825 0.77976 1.20060 1.21061 1.20088 1.21757 0.94514 1.01327 0.97154 0.92767 0.92695 0.92590 0.91998 0.92850 0.92861 0.91848 0.92236 0.91997 0.91916 0.91168 0.92146 0.82978 0.93035 0.88752 0.77838 0.95558 0.95651 0.92388 0.92058 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.48 37.16 0.31 -0.70 16 2 C -0.06 -0.49 0.77 -154.50 -0.12 -0.61 16 3 C -0.15 -1.11 7.78 37.16 0.29 -0.82 16 4 C -0.11 -0.83 4.73 -26.73 -0.13 -0.96 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.11 -1.12 5.43 -26.73 -0.15 -1.26 16 7 C 0.09 0.94 2.22 -67.72 -0.15 0.79 16 8 H 0.05 0.47 6.09 -51.93 -0.32 0.15 16 9 N -0.67 -9.39 5.93 -107.99 -0.64 -10.03 16 10 C 0.04 0.60 5.97 -4.98 -0.03 0.57 16 11 C 0.50 10.04 7.87 -10.99 -0.09 9.95 16 12 O -0.54 -13.35 16.20 5.56 0.09 -13.26 16 13 N -0.72 -15.23 5.55 -61.47 -0.34 -15.57 16 14 C 0.25 6.75 5.43 -5.19 -0.03 6.73 16 15 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.11 -1.05 4.00 -26.73 -0.11 -1.16 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 36 H 0.35 5.13 8.04 -39.29 -0.32 4.81 16 37 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 39 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -31.62 343.23 -8.53 -40.16 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.78 Total: 5.37 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.76 Total: -2.17 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.25 Total: -51.21 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.62 -8.53 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149858747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.560 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds