Wall clock time and date at job start Mon Mar 30 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99586 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 9 9 N 1.46896 * 109.47053 * 180.02562 * 7 6 5 10 10 C 1.46903 * 110.99908 * 274.99684 * 9 7 6 11 11 C 1.50697 * 109.47337 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00235 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00129 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00134 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47306 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99853 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99718 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46779 * 60.00108 * 19 17 15 21 21 H 1.48497 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47078 * 300.00295 * 19 17 15 23 23 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 24 24 H 1.09001 * 109.47142 * 300.00180 * 1 2 3 25 25 H 1.08996 * 109.46698 * 60.00234 * 1 2 3 26 26 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47261 * 299.99422 * 3 2 1 29 29 H 1.09001 * 109.47377 * 59.99963 * 3 2 1 30 30 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 31 31 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 32 32 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 34 34 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 35 35 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 36 36 H 1.00895 * 111.00219 * 151.04779 * 9 7 6 37 37 H 1.09003 * 109.46856 * 300.00136 * 10 9 7 38 38 H 1.09001 * 109.47072 * 60.00127 * 10 9 7 39 39 H 0.96999 * 119.99756 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.46612 * 300.00172 * 14 13 11 41 41 H 1.09002 * 109.47257 * 59.99719 * 14 13 11 42 42 H 0.97001 * 120.00041 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47853 * 180.02562 * 23 7 6 44 44 H 1.09002 * 109.47153 * 300.00319 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0005 7 6 3.5706 -0.7204 -1.2488 8 1 3.9336 0.3074 -1.2486 9 7 4.0602 -1.4129 -2.4482 10 6 5.4076 -0.9520 -2.8090 11 6 5.8757 -1.6835 -4.0406 12 8 5.1575 -2.5072 -4.5664 13 7 7.0921 -1.4215 -4.5585 14 6 7.5470 -2.1321 -5.7562 15 6 8.9292 -1.6594 -6.1263 16 1 9.4197 -0.9048 -5.5293 17 6 9.5676 -2.1904 -7.2269 18 7 8.9706 -3.1096 -7.9535 19 14 11.2808 -1.6038 -7.6860 20 1 12.2144 -1.8759 -6.5637 21 1 11.7423 -2.3252 -8.8992 22 1 11.2476 -0.1447 -7.9597 23 6 2.0406 -0.7209 -1.2492 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 1.2494 31 1 1.6766 -0.2073 2.1393 32 1 3.9333 -1.2340 2.1399 33 1 3.9329 0.3072 1.2498 34 1 3.7176 -2.4693 0.0003 35 1 5.1706 -1.4408 0.0005 36 1 3.4200 -1.2972 -3.2193 37 1 5.3837 0.1192 -3.0092 38 1 6.0929 -1.1525 -1.9854 39 1 7.6664 -0.7624 -4.1382 40 1 7.5712 -3.2033 -5.5557 41 1 6.8615 -1.9321 -6.5797 42 1 9.4200 -3.4834 -8.7276 43 1 1.6772 -0.2075 -2.1394 44 1 1.6776 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149858747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:06 Heat of formation + Delta-G solvation = -91.933030 kcal Electronic energy + Delta-G solvation = -20628.973825 eV Core-core repulsion = 17578.690814 eV Total energy + Delta-G solvation = -3050.283011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87338 -40.20501 -36.56485 -35.98929 -34.34487 -33.44664 -31.14560 -29.38259 -28.17904 -27.25707 -26.66874 -24.30136 -23.13561 -21.52100 -21.35776 -19.39931 -18.88784 -17.65194 -17.15034 -16.83231 -16.30569 -16.16637 -15.77600 -15.52979 -15.38216 -14.90384 -14.49847 -14.22847 -14.15152 -14.00640 -13.75628 -13.29082 -13.23590 -12.93730 -12.84344 -12.73809 -12.66889 -12.29490 -12.24105 -12.17523 -11.99787 -11.79053 -11.51776 -11.24964 -11.02479 -10.84301 -10.79555 -10.67913 -9.83038 -9.34850 -8.29275 -6.46343 1.42767 1.47116 1.55329 1.78408 2.29015 2.49820 3.05370 3.23953 3.72970 3.76497 3.96038 4.02845 4.22315 4.25847 4.36503 4.39981 4.47068 4.50606 4.56583 4.60743 4.75878 4.85942 4.87587 5.00601 5.08411 5.10437 5.14033 5.18528 5.20522 5.23148 5.23807 5.34972 5.40427 5.47936 5.48600 5.51462 5.67622 5.69765 5.84565 6.06922 6.36659 6.64802 6.93980 7.23284 7.51690 8.82841 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044627 B = 0.002911 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.271720 B = 9616.812380 C = 9789.320132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.091 3.909 8 H 0.058 0.942 9 N -0.688 5.688 10 C 0.058 3.942 11 C 0.492 3.508 12 O -0.592 6.592 13 N -0.709 5.709 14 C 0.267 3.733 15 C -0.557 4.557 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.107 4.107 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.344 0.656 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.408 0.592 40 H -0.015 1.015 41 H -0.014 1.014 42 H 0.269 0.731 43 H 0.059 0.941 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 11.316 20.618 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.146 4.146 7 C -0.018 4.018 8 H 0.076 0.924 9 N -0.321 5.321 10 C -0.074 4.074 11 C 0.279 3.721 12 O -0.473 6.473 13 N -0.360 5.360 14 C 0.144 3.856 15 C -0.595 4.595 16 H 0.103 0.897 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.145 4.145 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.244 0.756 40 H 0.003 0.997 41 H 0.004 0.996 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.696 10.073 20.424 26.073 hybrid contribution 0.743 0.681 -1.107 1.497 sum -11.953 10.755 19.317 25.133 Atomic orbital electron populations 1.21849 0.94025 1.01769 1.02098 1.20487 0.95634 0.95604 0.94262 1.21985 1.01428 0.94820 1.01961 1.21598 0.95356 1.00250 0.97203 1.21559 0.95799 1.01042 0.96978 1.21544 1.00096 0.99358 0.93626 1.21651 0.94967 0.95659 0.89495 0.92447 1.60153 1.02457 1.61087 1.08375 1.21785 0.93344 0.97626 0.94639 1.21458 0.81390 0.82989 0.86254 1.90637 1.56267 1.36764 1.63665 1.46186 1.17291 1.42739 1.29764 1.18510 0.94099 0.90772 0.82170 1.21602 1.00658 1.24302 1.12949 0.89732 1.26092 1.03370 0.94582 0.95644 1.70135 1.40347 1.28554 1.18003 0.85196 0.77482 0.78727 0.77743 1.18624 1.21114 1.18557 1.21735 0.93760 1.00812 0.98195 0.91666 0.92784 0.92943 0.92112 0.93010 0.91785 0.92519 0.90849 0.91288 0.90986 0.92892 0.92470 0.83696 0.89950 0.86559 0.75595 0.99744 0.99569 0.92235 0.92218 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.48 71.98 0.61 -1.18 16 2 C -0.06 -0.83 0.77 -52.18 -0.04 -0.87 16 3 C -0.14 -1.82 7.78 71.98 0.56 -1.26 16 4 C -0.11 -1.43 4.73 30.60 0.14 -1.28 16 5 C -0.12 -1.64 5.65 30.59 0.17 -1.47 16 6 C -0.11 -2.07 5.43 30.60 0.17 -1.91 16 7 C 0.09 1.82 2.22 44.92 0.10 1.92 16 8 H 0.06 1.04 6.09 -2.39 -0.01 1.02 16 9 N -0.69 -18.83 5.93 -495.58 -2.94 -21.77 16 10 C 0.06 1.59 5.97 85.56 0.51 2.10 16 11 C 0.49 20.04 7.87 87.66 0.69 20.73 16 12 O -0.59 -30.21 16.20 -3.03 -0.05 -30.26 16 13 N -0.71 -30.30 5.55 -466.78 -2.59 -32.89 16 14 C 0.27 14.95 5.43 85.63 0.46 15.42 16 15 C -0.56 -30.60 9.28 25.60 0.24 -30.36 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -56.89 13.29 21.44 0.28 -56.61 16 19 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 C -0.11 -1.95 4.00 30.59 0.12 -1.83 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.78 4.81 -2.39 -0.01 0.77 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.12 7.45 -2.39 -0.02 1.11 16 36 H 0.34 10.10 8.04 -89.70 -0.72 9.38 16 37 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 38 H 0.12 2.73 7.44 -2.39 -0.02 2.72 16 39 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 41 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -70.97 343.23 0.42 -70.55 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.51 Total: 25.88 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.20 Total: 0.60 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -5.24 Total: -111.27 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.97 0.42 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149858747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.383 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds