Wall clock time and date at job start Mon Mar 30 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47074 * 2 1 4 4 C 1.52998 * 109.47086 * 184.87143 * 3 2 1 5 5 C 1.50699 * 109.90475 * 65.73855 * 4 3 2 6 6 O 1.21291 * 119.99782 * 237.93719 * 5 4 3 7 7 N 1.34778 * 120.00122 * 57.93558 * 5 4 3 8 8 C 1.46491 * 120.00193 * 4.93051 * 7 5 4 9 9 C 1.46508 * 119.99559 * 184.93610 * 7 5 4 10 10 H 1.08996 * 109.47403 * 359.97438 * 9 7 5 11 11 C 1.53000 * 109.46549 * 239.99445 * 9 7 5 12 12 C 1.50696 * 109.46984 * 120.00084 * 9 7 5 13 13 H 1.08004 * 119.99945 * 35.02789 * 12 9 7 14 14 C 1.37876 * 119.99891 * 215.02887 * 12 9 7 15 15 N 1.31515 * 120.00005 * 184.79730 * 14 12 9 16 16 Si 1.86796 * 120.00144 * 4.79798 * 14 12 9 17 17 H 1.48501 * 109.46780 * 84.73775 * 16 14 12 18 18 H 1.48492 * 109.47492 * 204.73721 * 16 14 12 19 19 H 1.48499 * 109.47144 * 324.74256 * 16 14 12 20 20 C 1.53994 * 109.91907 * 186.83675 * 4 3 2 21 21 C 1.54595 * 105.14069 * 120.77819 * 20 4 3 22 22 C 1.54948 * 102.92087 * 21.95859 * 21 20 4 23 23 N 1.47902 * 110.08388 * 304.52908 * 4 3 2 24 24 H 1.09006 * 109.46630 * 299.99631 * 1 2 3 25 25 H 1.08993 * 109.47455 * 59.99173 * 1 2 3 26 26 H 1.09004 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46630 * 240.00369 * 2 1 3 28 28 H 1.08993 * 109.47455 * 120.00827 * 2 1 3 29 29 H 1.09003 * 109.46863 * 64.87658 * 3 2 1 30 30 H 1.08994 * 109.47567 * 304.87378 * 3 2 1 31 31 H 1.08997 * 109.47263 * 272.87113 * 8 7 5 32 32 H 1.09004 * 109.46822 * 32.86987 * 8 7 5 33 33 H 1.09002 * 109.47290 * 152.86745 * 8 7 5 34 34 H 1.09002 * 109.47041 * 174.70203 * 11 9 7 35 35 H 1.09000 * 109.47210 * 54.70511 * 11 9 7 36 36 H 1.08997 * 109.47849 * 294.70459 * 11 9 7 37 37 H 0.96998 * 120.00007 * 179.97438 * 15 14 12 38 38 H 1.09000 * 110.31336 * 239.69483 * 20 4 3 39 39 H 1.09002 * 110.30664 * 1.86566 * 20 4 3 40 40 H 1.09000 * 110.72407 * 140.31597 * 21 20 4 41 41 H 1.08999 * 110.72515 * 263.42606 * 21 20 4 42 42 H 1.08993 * 110.66422 * 81.01889 * 22 21 20 43 43 H 1.08996 * 110.66595 * 204.15008 * 22 21 20 44 44 H 1.00892 * 110.99786 * 335.73376 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4442 -0.1225 5 6 3.9724 0.8994 -1.4672 6 8 4.7012 -0.0678 -1.5341 7 7 3.5268 1.4868 -2.5954 8 6 2.7359 2.7174 -2.5174 9 6 3.8333 0.8944 -3.8999 10 1 4.4261 -0.0092 -3.7583 11 6 4.6254 1.8969 -4.7416 12 6 2.5492 0.5476 -4.6083 13 1 1.6799 1.1775 -4.4897 14 6 2.4842 -0.5738 -5.4077 15 7 1.3947 -0.8255 -6.1002 16 14 3.9433 -1.7358 -5.5074 17 1 3.8840 -2.7025 -4.3817 18 1 3.9019 -2.4732 -6.7957 19 1 5.2041 -0.9556 -5.4239 20 6 4.1034 2.8769 0.0479 21 6 5.0592 2.8074 1.2610 22 6 5.4304 1.3044 1.3240 23 7 4.1621 0.6253 0.9548 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.7497 1.9304 0.9305 30 1 1.6072 1.9809 -0.8430 31 1 1.6824 2.4652 -2.3964 32 1 3.0681 3.3093 -1.6645 33 1 2.8688 3.2934 -3.4332 34 1 4.9344 1.4243 -5.6740 35 1 5.5073 2.2194 -4.1881 36 1 3.9990 2.7611 -4.9625 37 1 1.3491 -1.6142 -6.6629 38 1 4.6472 3.1854 -0.8449 39 1 3.2845 3.5671 0.2506 40 1 5.9463 3.4169 1.0886 41 1 4.5493 3.1200 2.1722 42 1 6.2151 1.0715 0.6043 43 1 5.7367 1.0257 2.3323 44 1 3.5413 0.5629 1.7477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233318928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:35 Heat of formation + Delta-G solvation = -52.488381 kcal Electronic energy + Delta-G solvation = -22752.393522 eV Core-core repulsion = 19703.820959 eV Total energy + Delta-G solvation = -3048.572563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74611 -38.86697 -37.06043 -35.56104 -34.66319 -32.60270 -30.89753 -30.44891 -27.77693 -27.27209 -26.42085 -24.45624 -22.68811 -21.79765 -21.63202 -19.76295 -19.02203 -17.65286 -17.08171 -16.89085 -16.42609 -16.27997 -15.90019 -15.28509 -14.82300 -14.61889 -14.48714 -14.36558 -14.22435 -13.89321 -13.54944 -13.35743 -13.20206 -13.07574 -13.00044 -12.78763 -12.72033 -12.50130 -12.29560 -11.95863 -11.95374 -11.84993 -11.71207 -11.49019 -11.34380 -11.25367 -10.80871 -10.41557 -9.44324 -9.25302 -8.38687 -6.40414 1.22069 1.28871 1.37607 1.89131 2.24473 2.31192 3.02429 3.25350 3.60870 3.71313 3.77655 4.06961 4.13666 4.20464 4.27609 4.42430 4.47727 4.56812 4.61646 4.65111 4.66753 4.73175 4.79165 4.82203 4.85177 4.89771 4.92703 5.01278 5.06833 5.08750 5.12474 5.24822 5.30680 5.35254 5.39494 5.47185 5.53837 5.78403 5.89072 6.19235 6.55938 6.63822 6.87444 7.25015 7.54397 8.76772 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.007371 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.187551 B = 3797.768608 C = 4214.969525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.095 3.905 5 C 0.512 3.488 6 O -0.592 6.592 7 N -0.598 5.598 8 C 0.069 3.931 9 C 0.223 3.777 10 H 0.032 0.968 11 C -0.139 4.139 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.032 3.968 15 N -0.932 5.932 16 Si 0.920 3.080 17 H -0.290 1.290 18 H -0.274 1.274 19 H -0.255 1.255 20 C -0.142 4.142 21 C -0.143 4.143 22 C 0.042 3.958 23 N -0.666 5.666 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.267 0.733 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 11.435 16.907 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.159 4.159 4 C -0.001 4.001 5 C 0.300 3.700 6 O -0.473 6.473 7 N -0.329 5.329 8 C -0.073 4.073 9 C 0.120 3.880 10 H 0.050 0.950 11 C -0.197 4.197 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.167 4.167 15 N -0.571 5.571 16 Si 0.746 3.254 17 H -0.217 1.217 18 H -0.200 1.200 19 H -0.179 1.179 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.087 4.087 23 N -0.297 5.297 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.340 10.268 16.304 19.555 hybrid contribution 0.133 -0.571 -0.473 0.753 sum 3.472 9.697 15.831 18.887 Atomic orbital electron populations 1.21713 0.94584 1.01598 1.02231 1.21378 0.96578 0.96985 1.00599 1.22183 0.90839 0.97698 1.05158 1.21619 0.96141 0.92797 0.89505 1.21183 0.79311 0.82815 0.86699 1.90572 1.39312 1.29583 1.87802 1.48142 1.52369 1.26560 1.05877 1.22225 0.95249 0.85788 1.04031 1.19044 0.94561 0.93452 0.80903 0.95044 1.22072 0.98591 0.99898 0.99162 1.21334 0.97547 1.09616 1.26567 0.92646 1.25531 0.97539 0.98608 0.95056 1.69973 1.29069 1.28432 1.29675 0.86172 0.81966 0.80153 0.77098 1.21659 1.19966 1.17891 1.23034 1.00898 0.94576 0.99607 1.23095 0.99779 0.97076 0.98246 1.23120 0.92293 0.92190 1.01118 1.62139 1.06509 1.49972 1.11060 0.89923 0.93886 0.93482 0.96966 0.90975 0.87279 0.89638 0.92999 0.87864 0.91014 0.93430 0.93700 0.91572 0.92336 0.91737 0.87017 0.89940 0.88559 0.93463 0.88400 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.12 -3.59 5.53 30.59 0.17 -3.42 16 3 C -0.12 -2.99 3.69 30.59 0.11 -2.88 16 4 C 0.09 2.70 0.51 2.92 0.00 2.70 16 5 C 0.51 21.37 5.28 87.66 0.46 21.83 16 6 O -0.59 -30.97 15.80 -3.06 -0.05 -31.02 16 7 N -0.60 -24.89 2.74 -826.80 -2.27 -27.16 16 8 C 0.07 2.15 7.72 127.77 0.99 3.14 16 9 C 0.22 11.04 2.29 44.24 0.10 11.14 16 10 H 0.03 1.76 4.07 -2.39 -0.01 1.75 16 11 C -0.14 -5.83 9.05 71.98 0.65 -5.18 16 12 C -0.51 -28.97 8.82 25.60 0.23 -28.74 16 13 H 0.06 3.32 7.67 -2.91 -0.02 3.29 16 14 C 0.03 1.91 5.47 84.65 0.46 2.37 16 15 N -0.93 -57.85 13.96 21.45 0.30 -57.55 16 16 Si 0.92 48.23 26.98 68.60 1.85 50.08 16 17 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 18 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.25 -12.82 6.83 99.48 0.68 -12.14 16 20 C -0.14 -2.90 4.23 31.47 0.13 -2.77 16 21 C -0.14 -2.36 7.06 31.80 0.22 -2.14 16 22 C 0.04 0.96 7.53 86.65 0.65 1.61 16 23 N -0.67 -18.38 5.97 -462.77 -2.76 -21.14 16 24 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.01 0.49 7.28 -2.38 -0.02 0.47 16 28 H 0.07 2.01 7.22 -2.39 -0.02 2.00 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.21 4.45 -2.39 -0.01 2.20 16 31 H 0.05 1.65 6.46 -2.39 -0.02 1.63 16 32 H 0.10 2.35 3.93 -2.38 -0.01 2.35 16 33 H 0.07 2.20 6.54 -2.39 -0.02 2.19 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.53 6.88 -2.39 -0.02 2.51 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.06 1.52 6.69 -2.39 -0.02 1.50 16 39 H 0.11 1.57 7.30 -2.39 -0.02 1.55 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 44 H 0.35 7.56 7.74 -89.70 -0.69 6.87 16 Total: -1.00 -76.65 329.53 2.24 -74.41 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.27 Total: 17.78 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.90 Total: -5.39 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.73 Total: -105.86 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.05 Total: -31.02 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.85 Total: 50.08 kcal Total: -76.65 2.24 -74.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233318928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.921 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds