Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47188 * 2 1 4 4 C 1.53003 * 109.47388 * 184.91034 * 3 2 1 5 5 C 1.50701 * 109.90103 * 62.82557 * 4 3 2 6 6 O 1.21288 * 120.00077 * 242.03566 * 5 4 3 7 7 N 1.34780 * 120.00311 * 62.04570 * 5 4 3 8 8 C 1.46502 * 120.00288 * 183.23898 * 7 5 4 9 9 C 1.52993 * 109.47023 * 84.89159 * 8 7 5 10 10 C 1.46498 * 119.99513 * 3.23149 * 7 5 4 11 11 C 1.50700 * 109.47483 * 261.87416 * 10 7 5 12 12 H 1.08007 * 119.99705 * 0.02562 * 11 10 7 13 13 C 1.37878 * 120.00210 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99954 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46987 * 89.99625 * 15 13 11 17 17 H 1.48497 * 109.47096 * 210.00166 * 15 13 11 18 18 H 1.48506 * 109.46769 * 329.99901 * 15 13 11 19 19 C 1.53989 * 109.92066 * 183.92801 * 4 3 2 20 20 C 1.54596 * 105.13978 * 120.77402 * 19 4 3 21 21 C 1.54937 * 102.91891 * 21.96204 * 20 19 4 22 22 N 1.47896 * 110.08315 * 301.62297 * 4 3 2 23 23 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47014 * 300.00098 * 1 2 3 25 25 H 1.09003 * 109.47019 * 60.00065 * 1 2 3 26 26 H 1.08999 * 109.47363 * 240.00281 * 2 1 3 27 27 H 1.09003 * 109.47019 * 119.99935 * 2 1 3 28 28 H 1.09001 * 109.47011 * 64.91280 * 3 2 1 29 29 H 1.08997 * 109.47278 * 304.91253 * 3 2 1 30 30 H 1.08996 * 109.46542 * 204.89356 * 8 7 5 31 31 H 1.09001 * 109.46529 * 324.89284 * 8 7 5 32 32 H 1.09000 * 109.47751 * 65.06317 * 9 8 7 33 33 H 1.09002 * 109.47095 * 185.06341 * 9 8 7 34 34 H 1.09006 * 109.47351 * 305.06196 * 9 8 7 35 35 H 1.08997 * 109.47509 * 21.88123 * 10 7 5 36 36 H 1.08997 * 109.47120 * 141.87819 * 10 7 5 37 37 H 0.96997 * 120.00019 * 179.97438 * 14 13 11 38 38 H 1.09001 * 110.31188 * 239.69343 * 19 4 3 39 39 H 1.09004 * 110.30667 * 1.86129 * 19 4 3 40 40 H 1.09002 * 110.71747 * 140.31158 * 20 19 4 41 41 H 1.08994 * 110.72823 * 263.59876 * 20 19 4 42 42 H 1.09005 * 110.67057 * 81.01629 * 21 20 19 43 43 H 1.09002 * 110.66758 * 203.97609 * 21 20 19 44 44 H 1.00904 * 110.99784 * 335.73490 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4443 -0.1235 5 6 3.9739 0.8340 -1.4393 6 8 4.6455 -0.1759 -1.4568 7 7 3.5935 1.4104 -2.5967 8 6 3.9303 0.7789 -3.8750 9 6 2.8732 -0.2724 -4.2186 10 6 2.8431 2.6684 -2.5764 11 6 1.3725 2.3788 -2.7324 12 1 1.0309 1.3594 -2.8358 13 6 0.4630 3.4150 -2.7430 14 7 -0.8205 3.1621 -2.8786 15 14 1.0538 5.1781 -2.5649 16 1 1.3381 5.7430 -3.9085 17 1 0.0017 5.9879 -1.8998 18 1 2.2915 5.2048 -1.7446 19 6 4.0976 2.8859 -0.0258 20 6 5.0542 2.8815 1.1887 21 6 5.4316 1.3851 1.3270 22 7 4.1659 0.6831 0.9932 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7503 1.9303 0.9307 29 1 1.6067 1.9811 -0.8427 30 1 3.9576 1.5363 -4.6583 31 1 4.9068 0.3006 -3.7978 32 1 1.9138 0.2175 -4.3841 33 1 3.1702 -0.8044 -5.1224 34 1 2.7826 -0.9796 -3.3940 35 1 3.0145 3.1785 -1.6286 36 1 3.1771 3.3040 -3.3965 37 1 -1.4603 3.8911 -2.8857 38 1 4.6397 3.1513 -0.9334 39 1 3.2760 3.5821 0.1423 40 1 5.9387 3.4851 0.9851 41 1 4.5426 3.2346 2.0840 42 1 6.2170 1.1194 0.6193 43 1 5.7423 1.1594 2.3471 44 1 3.5457 0.6581 1.7887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233319230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = -48.011549 kcal Electronic energy + Delta-G solvation = -23235.648846 eV Core-core repulsion = 20187.270413 eV Total energy + Delta-G solvation = -3048.378433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78403 -38.76244 -37.02781 -35.37287 -34.49868 -32.63870 -30.87524 -30.42762 -29.53253 -26.34645 -25.11320 -24.23548 -22.86431 -22.12317 -21.71349 -19.60656 -18.95482 -17.38992 -17.28570 -16.83175 -16.38069 -15.97297 -15.77338 -15.25131 -14.85463 -14.61930 -14.53404 -14.27785 -14.24178 -13.95131 -13.54109 -13.23946 -13.14540 -12.99148 -12.88375 -12.70853 -12.59555 -12.38048 -12.06842 -11.94406 -11.91876 -11.82237 -11.70964 -11.46122 -11.25011 -11.21562 -10.62602 -10.39598 -9.45228 -9.34117 -8.19969 -6.19313 1.40813 1.44375 1.50927 1.87005 2.32100 2.38931 3.09997 3.30671 3.63350 3.77833 3.84366 4.09027 4.22976 4.25021 4.33601 4.37440 4.43221 4.55887 4.56817 4.63916 4.75069 4.76223 4.88777 4.89269 4.92084 4.93984 4.95880 5.02726 5.08300 5.09253 5.14288 5.25991 5.36315 5.41877 5.46176 5.54072 5.73794 5.87956 5.92693 6.30657 6.53472 6.75355 6.85591 7.35320 7.51529 8.94003 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.009285 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.539690 B = 3014.920620 C = 3262.549213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.156 4.156 4 C 0.098 3.902 5 C 0.530 3.470 6 O -0.579 6.579 7 N -0.599 5.599 8 C 0.117 3.883 9 C -0.151 4.151 10 C 0.191 3.809 11 C -0.513 4.513 12 H 0.047 0.953 13 C 0.029 3.971 14 N -0.930 5.930 15 Si 0.918 3.082 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.235 1.235 19 C -0.146 4.146 20 C -0.147 4.147 21 C 0.045 3.955 22 N -0.660 5.660 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.837 1.901 7.075 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.004 3.996 5 C 0.318 3.682 6 O -0.459 6.459 7 N -0.330 5.330 8 C -0.005 4.005 9 C -0.209 4.209 10 C 0.069 3.931 11 C -0.552 4.552 12 H 0.065 0.935 13 C -0.171 4.171 14 N -0.570 5.570 15 Si 0.742 3.258 16 H -0.198 1.198 17 H -0.214 1.214 18 H -0.158 1.158 19 C -0.185 4.185 20 C -0.185 4.185 21 C -0.084 4.084 22 N -0.290 5.290 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.309 0.885 6.656 11.478 hybrid contribution -0.842 1.377 -0.076 1.616 sum 8.467 2.262 6.580 10.959 Atomic orbital electron populations 1.21644 0.95769 1.00893 1.01457 1.21148 0.95490 0.96461 1.00068 1.22678 0.91616 0.98823 1.06197 1.21480 0.95814 0.92001 0.90354 1.20649 0.78216 0.83469 0.85860 1.90547 1.40872 1.26482 1.87956 1.47966 1.54439 1.25119 1.05493 1.21329 0.97781 0.96145 0.85292 1.21992 0.99661 0.98525 1.00762 1.20243 0.90718 0.82641 0.99452 1.21309 0.90461 0.94303 1.49086 0.93494 1.25550 0.94606 1.02488 0.94432 1.70025 1.02483 1.33615 1.50857 0.86154 0.79586 0.80594 0.79450 1.19816 1.21381 1.15835 1.23036 1.00142 0.95460 0.99890 1.23138 0.99534 0.98284 0.97590 1.23129 0.92475 0.90956 1.01819 1.62250 1.06521 1.51264 1.08916 0.92773 0.91958 0.94723 0.96003 0.91558 0.90921 0.85797 0.89397 0.91298 0.93416 0.90162 0.95315 0.91397 0.94990 0.92581 0.91681 0.89923 0.89471 0.89458 0.92361 0.88104 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.91 71.98 0.71 -4.47 16 2 C -0.09 -3.55 5.55 30.59 0.17 -3.38 16 3 C -0.16 -5.75 3.64 30.59 0.11 -5.64 16 4 C 0.10 3.44 0.51 2.93 0.00 3.44 16 5 C 0.53 22.03 5.13 87.66 0.45 22.48 16 6 O -0.58 -27.16 16.11 -3.05 -0.05 -27.21 16 7 N -0.60 -24.42 2.44 -826.17 -2.02 -26.44 16 8 C 0.12 4.35 6.12 86.38 0.53 4.88 16 9 C -0.15 -5.71 10.05 71.98 0.72 -4.99 16 10 C 0.19 7.94 3.18 85.63 0.27 8.21 16 11 C -0.51 -25.19 6.65 25.60 0.17 -25.02 16 12 H 0.05 2.67 7.01 -2.91 -0.02 2.65 16 13 C 0.03 1.47 5.47 84.65 0.46 1.93 16 14 N -0.93 -51.88 13.96 21.45 0.30 -51.58 16 15 Si 0.92 37.88 27.47 68.60 1.88 39.76 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.24 -8.55 6.54 99.48 0.65 -7.90 16 19 C -0.15 -4.40 4.21 31.47 0.13 -4.27 16 20 C -0.15 -3.32 7.06 31.80 0.22 -3.10 16 21 C 0.05 1.15 7.53 86.65 0.65 1.80 16 22 N -0.66 -20.55 6.00 -462.78 -2.78 -23.33 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.02 0.95 7.17 -2.39 -0.02 0.94 16 27 H 0.07 2.24 7.39 -2.39 -0.02 2.22 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.12 5.39 3.08 -2.39 -0.01 5.38 16 30 H 0.09 2.91 7.93 -2.39 -0.02 2.89 16 31 H 0.07 2.49 7.54 -2.39 -0.02 2.48 16 32 H 0.05 2.02 6.92 -2.39 -0.02 2.00 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 2.67 2.28 -2.39 -0.01 2.66 16 36 H 0.03 1.28 7.42 -2.39 -0.02 1.27 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.06 2.07 6.59 -2.39 -0.02 2.06 16 39 H 0.08 2.47 7.15 -2.38 -0.02 2.45 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.35 9.35 7.91 -89.69 -0.71 8.64 16 Total: -1.00 -61.70 329.88 2.17 -59.53 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.22 Total: 37.39 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.61 Total: -8.13 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.50 Total: -101.35 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.88 Total: 39.76 kcal Total: -61.70 2.17 -59.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233319230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.520 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds