Wall clock time and date at job start Mon Mar 30 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.50701 * 109.47245 * 239.99569 * 2 1 3 5 5 H 1.08006 * 119.99905 * 240.00212 * 4 2 1 6 6 C 1.37873 * 119.99875 * 60.00137 * 4 2 1 7 7 N 1.31514 * 120.00054 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47061 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47434 * 119.99987 * 8 6 4 11 11 H 1.48504 * 109.47126 * 240.00562 * 8 6 4 12 12 C 1.53004 * 109.46724 * 119.99912 * 2 1 3 13 13 N 1.46498 * 109.47291 * 299.99708 * 12 2 1 14 14 C 1.34778 * 120.00388 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99599 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00077 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.46279 * 84.98034 * 16 14 13 18 18 C 1.53034 * 109.45997 * 204.95027 * 16 14 13 19 19 C 1.53118 * 109.28068 * 60.83653 * 18 16 14 20 20 C 1.53121 * 109.15998 * 57.65604 * 19 18 16 21 21 C 1.53044 * 109.27467 * 302.34543 * 20 19 18 22 22 N 1.46847 * 109.52516 * 59.18169 * 21 20 19 23 23 H 1.08997 * 109.47594 * 300.00338 * 1 2 3 24 24 H 1.08998 * 109.46863 * 60.00090 * 1 2 3 25 25 H 1.09003 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46887 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46607 * 299.99693 * 3 2 1 28 28 H 1.08999 * 109.47050 * 59.99893 * 3 2 1 29 29 H 0.96997 * 120.00124 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46778 * 180.02562 * 12 2 1 31 31 H 1.09003 * 109.47516 * 59.99966 * 12 2 1 32 32 H 0.97011 * 119.99872 * 0.02562 * 13 12 2 33 33 H 1.09003 * 109.46843 * 300.02441 * 17 16 14 34 34 H 1.08998 * 109.46904 * 60.01767 * 17 16 14 35 35 H 1.08994 * 109.47045 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49974 * 180.78031 * 18 16 14 37 37 H 1.08998 * 109.50670 * 300.89558 * 18 16 14 38 38 H 1.09004 * 109.52160 * 177.55277 * 19 18 16 39 39 H 1.08992 * 109.52406 * 297.74744 * 19 18 16 40 40 H 1.08996 * 109.50720 * 62.28327 * 20 19 18 41 41 H 1.08993 * 109.50411 * 182.40795 * 20 19 18 42 42 H 1.08999 * 109.45943 * 299.16193 * 21 20 19 43 43 H 1.09003 * 109.46209 * 179.19733 * 21 20 19 44 44 H 1.00901 * 110.99839 * 174.16251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2866 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5739 -1.4775 3.7809 16 6 1.3739 0.2188 4.9000 17 6 -0.0291 -0.2864 5.2427 18 6 2.3171 -0.0618 6.0720 19 6 3.7149 0.4634 5.7330 20 6 3.6279 1.9607 5.4244 21 6 2.6466 2.1827 4.2712 22 7 1.3246 1.6642 4.6450 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7088 1.1610 -3.4844 30 1 3.1300 -0.7209 1.2496 31 1 1.6766 -1.7490 1.2494 32 1 0.9936 0.7580 2.3564 33 1 -0.7009 -0.0874 4.4077 34 1 0.0073 -1.3592 5.4320 35 1 -0.3930 0.2275 6.1323 36 1 1.9465 0.4402 6.9656 37 1 2.3656 -1.1359 6.2510 38 1 4.3795 0.3045 6.5822 39 1 4.1017 -0.0661 4.8624 40 1 3.2780 2.4946 6.3079 41 1 4.6128 2.3315 5.1407 42 1 3.0044 1.6599 3.3842 43 1 2.5716 3.2491 4.0584 44 1 0.6374 1.8836 3.9395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315906683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:52 Heat of formation + Delta-G solvation = -53.914836 kcal Electronic energy + Delta-G solvation = -22353.326796 eV Core-core repulsion = 19304.692377 eV Total energy + Delta-G solvation = -3048.634419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57260 -37.45571 -36.28750 -33.61378 -32.78250 -31.72646 -30.70508 -27.09239 -25.83383 -25.78980 -25.10780 -23.58279 -22.56963 -20.79756 -19.11827 -18.73395 -17.25596 -16.12972 -15.70392 -15.22752 -15.05709 -14.68795 -14.18347 -13.97847 -13.65034 -13.42634 -13.16234 -12.95540 -12.83509 -12.26210 -12.12123 -12.01549 -11.88258 -11.66013 -11.42063 -11.24437 -10.91879 -10.70327 -10.64887 -10.48443 -10.43425 -10.30119 -10.24384 -9.85994 -9.68954 -9.37860 -8.84092 -8.49859 -8.36444 -8.32856 -6.06140 -4.16254 2.99649 3.24473 3.33206 3.37512 3.59575 4.13410 4.37275 4.68110 4.81424 4.97136 5.06558 5.20796 5.22689 5.31784 5.57489 5.60663 5.70543 5.75637 5.85493 5.92356 6.00112 6.06908 6.11216 6.18373 6.20432 6.27215 6.43974 6.45276 6.72510 6.75139 6.81411 6.90969 6.95736 6.98759 7.22278 7.29754 7.50100 7.65303 7.95561 7.98834 8.10538 8.34035 8.64299 8.84632 9.49913 10.95326 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031115 B = 0.004910 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.682161 B = 5701.372394 C = 5744.460551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.483 3.517 15 O -0.548 6.548 16 C 0.097 3.903 17 C -0.137 4.137 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.115 4.115 21 C 0.046 3.954 22 N -0.671 5.671 23 H 0.004 0.996 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.003 0.997 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 3.450 14.271 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.010 3.990 13 N -0.369 5.369 14 C 0.266 3.734 15 O -0.425 6.425 16 C 0.003 3.997 17 C -0.195 4.195 18 C -0.127 4.127 19 C -0.165 4.165 20 C -0.153 4.153 21 C -0.083 4.083 22 N -0.305 5.305 23 H 0.023 0.977 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.105 0.895 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.089 3.008 14.830 15.132 hybrid contribution 0.115 -0.388 -1.968 2.010 sum 0.203 2.619 12.862 13.127 Atomic orbital electron populations 1.21825 0.97757 0.99180 1.00009 1.18358 0.92776 0.92724 0.90609 1.21816 0.98513 0.98342 0.99963 1.21013 1.31439 1.12088 0.89871 0.92442 1.24877 0.94827 0.94920 0.98870 1.69806 1.36683 1.22784 1.23164 0.86516 0.78666 0.79757 0.82959 1.19777 1.21023 1.21023 1.21704 0.98003 0.95788 0.83524 1.46416 1.52495 1.31701 1.06302 1.21531 0.80872 0.85275 0.85678 1.90639 1.38177 1.26701 1.86960 1.21307 0.97536 0.87308 0.93572 1.21787 0.93460 1.01601 1.02654 1.21389 0.93877 1.01547 0.95857 1.21646 0.96943 0.95759 1.02147 1.21575 0.98400 0.96691 0.98629 1.22084 0.88890 1.00165 0.97205 1.60520 1.08287 1.11584 1.50070 0.97681 0.89530 0.95429 0.95506 0.89520 0.97775 0.93028 0.92906 0.92812 0.77191 0.92091 0.91410 0.90700 0.90845 0.90711 0.91908 0.91186 0.91344 0.91761 0.93781 0.90385 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.72 -12.63 3.99 -60.29 -0.24 -12.87 16 14 C 0.48 8.30 4.72 -10.98 -0.05 8.25 16 15 O -0.55 -11.33 15.04 5.56 0.08 -11.25 16 16 C 0.10 1.29 0.90 -132.76 -0.12 1.17 16 17 C -0.14 -1.57 8.69 37.16 0.32 -1.25 16 18 C -0.09 -1.12 4.53 -26.65 -0.12 -1.24 16 19 C -0.13 -1.63 5.72 -26.61 -0.15 -1.79 16 20 C -0.12 -1.33 6.09 -26.65 -0.16 -1.49 16 21 C 0.05 0.57 6.22 -3.83 -0.02 0.55 16 22 N -0.67 -8.08 6.12 -101.17 -0.62 -8.70 16 23 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 29 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 6.31 4.69 -40.82 -0.19 6.12 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.11 6.58 -51.93 -0.34 0.76 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.66 6.40 -51.93 -0.33 0.33 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.34 3.90 7.47 -39.29 -0.29 3.61 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -27.69 329.16 -8.01 -35.70 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.52 Total: 8.18 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.17 Total: -8.77 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.34 Total: -44.44 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.69 -8.01 -35.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315906683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.216 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds