Wall clock time and date at job start Mon Mar 30 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.50701 * 109.47245 * 239.99569 * 2 1 3 5 5 H 1.08006 * 119.99905 * 240.00212 * 4 2 1 6 6 C 1.37873 * 119.99875 * 60.00137 * 4 2 1 7 7 N 1.31514 * 120.00054 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47061 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47434 * 119.99987 * 8 6 4 11 11 H 1.48504 * 109.47126 * 240.00562 * 8 6 4 12 12 C 1.53004 * 109.46724 * 119.99912 * 2 1 3 13 13 N 1.46498 * 109.47291 * 299.99708 * 12 2 1 14 14 C 1.34778 * 120.00388 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99599 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00077 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.46279 * 84.98034 * 16 14 13 18 18 C 1.53034 * 109.45997 * 204.95027 * 16 14 13 19 19 C 1.53118 * 109.28068 * 60.83653 * 18 16 14 20 20 C 1.53121 * 109.15998 * 57.65604 * 19 18 16 21 21 C 1.53044 * 109.27467 * 302.34543 * 20 19 18 22 22 N 1.46847 * 109.52516 * 59.18169 * 21 20 19 23 23 H 1.08997 * 109.47594 * 300.00338 * 1 2 3 24 24 H 1.08998 * 109.46863 * 60.00090 * 1 2 3 25 25 H 1.09003 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46887 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46607 * 299.99693 * 3 2 1 28 28 H 1.08999 * 109.47050 * 59.99893 * 3 2 1 29 29 H 0.96997 * 120.00124 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46778 * 180.02562 * 12 2 1 31 31 H 1.09003 * 109.47516 * 59.99966 * 12 2 1 32 32 H 0.97011 * 119.99872 * 0.02562 * 13 12 2 33 33 H 1.09003 * 109.46843 * 300.02441 * 17 16 14 34 34 H 1.08998 * 109.46904 * 60.01767 * 17 16 14 35 35 H 1.08994 * 109.47045 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49974 * 180.78031 * 18 16 14 37 37 H 1.08998 * 109.50670 * 300.89558 * 18 16 14 38 38 H 1.09004 * 109.52160 * 177.55277 * 19 18 16 39 39 H 1.08992 * 109.52406 * 297.74744 * 19 18 16 40 40 H 1.08996 * 109.50720 * 62.28327 * 20 19 18 41 41 H 1.08993 * 109.50411 * 182.40795 * 20 19 18 42 42 H 1.08999 * 109.45943 * 299.16193 * 21 20 19 43 43 H 1.09003 * 109.46209 * 179.19733 * 21 20 19 44 44 H 1.00901 * 110.99839 * 174.16251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2866 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5739 -1.4775 3.7809 16 6 1.3739 0.2188 4.9000 17 6 -0.0291 -0.2864 5.2427 18 6 2.3171 -0.0618 6.0720 19 6 3.7149 0.4634 5.7330 20 6 3.6279 1.9607 5.4244 21 6 2.6466 2.1827 4.2712 22 7 1.3246 1.6642 4.6450 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7088 1.1610 -3.4844 30 1 3.1300 -0.7209 1.2496 31 1 1.6766 -1.7490 1.2494 32 1 0.9936 0.7580 2.3564 33 1 -0.7009 -0.0874 4.4077 34 1 0.0073 -1.3592 5.4320 35 1 -0.3930 0.2275 6.1323 36 1 1.9465 0.4402 6.9656 37 1 2.3656 -1.1359 6.2510 38 1 4.3795 0.3045 6.5822 39 1 4.1017 -0.0661 4.8624 40 1 3.2780 2.4946 6.3079 41 1 4.6128 2.3315 5.1407 42 1 3.0044 1.6599 3.3842 43 1 2.5716 3.2491 4.0584 44 1 0.6374 1.8836 3.9395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315906683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:51 Heat of formation + Delta-G solvation = -71.295574 kcal Electronic energy + Delta-G solvation = -22354.080481 eV Core-core repulsion = 19304.692377 eV Total energy + Delta-G solvation = -3049.388104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83648 -38.86097 -37.90665 -35.20301 -33.93573 -32.93238 -32.35679 -28.01689 -27.62277 -27.60350 -26.97886 -24.61127 -23.82959 -21.92162 -20.70682 -20.28767 -18.46675 -17.85117 -17.09253 -16.77442 -16.44122 -16.33057 -15.45543 -15.21491 -14.90459 -14.78382 -14.56550 -14.39303 -14.12981 -14.01040 -13.30849 -13.19888 -13.09664 -12.96919 -12.84688 -12.71861 -12.67668 -12.60923 -12.30237 -12.17208 -11.65509 -11.53986 -11.50232 -11.33610 -11.24860 -11.04981 -10.74499 -10.43544 -9.99682 -9.49431 -8.05990 -6.21840 1.38740 1.43088 1.52196 1.62589 2.20405 2.45302 3.10292 3.17626 3.61114 3.77712 3.91198 4.02947 4.21633 4.35953 4.38474 4.43862 4.58930 4.64952 4.66969 4.75518 4.84446 4.89962 4.92247 4.97332 4.99235 5.04658 5.06864 5.13014 5.16870 5.17854 5.24260 5.30439 5.45963 5.52160 5.62290 5.63545 5.83975 6.10215 6.16490 6.26252 6.39426 6.60086 6.81765 7.24354 7.46136 8.93100 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031115 B = 0.004910 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.682161 B = 5701.372394 C = 5744.460551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.116 4.116 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.150 3.850 13 N -0.711 5.711 14 C 0.481 3.519 15 O -0.586 6.586 16 C 0.104 3.896 17 C -0.135 4.135 18 C -0.088 4.088 19 C -0.128 4.128 20 C -0.111 4.111 21 C 0.043 3.957 22 N -0.657 5.657 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.096 0.904 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 4.786 15.829 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.568 4.568 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.026 3.974 13 N -0.363 5.363 14 C 0.267 3.733 15 O -0.466 6.466 16 C 0.010 3.990 17 C -0.193 4.193 18 C -0.126 4.126 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.087 4.087 22 N -0.290 5.290 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.240 0.760 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.115 0.885 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.758 4.370 16.396 16.985 hybrid contribution 0.404 -0.812 -2.431 2.595 sum -0.354 3.559 13.965 14.415 Atomic orbital electron populations 1.21660 0.96980 0.98671 1.00413 1.18349 0.93309 0.93010 0.90160 1.21633 0.97711 0.97757 1.00314 1.21269 1.31776 1.12131 0.91651 0.94078 1.25428 0.95078 0.95580 1.00894 1.69897 1.36869 1.23213 1.23635 0.85715 0.78181 0.78699 0.80257 1.20239 1.20565 1.20589 1.21223 0.96580 0.95004 0.84588 1.46226 1.52653 1.31798 1.05581 1.22453 0.79733 0.84732 0.86428 1.90622 1.39808 1.28655 1.87469 1.21376 0.98692 0.87523 0.91449 1.21818 0.92009 1.01550 1.03904 1.21433 0.93624 1.01189 0.96393 1.21638 0.97392 0.96411 1.01164 1.21569 0.98643 0.95704 0.98935 1.22153 0.89166 1.00859 0.96484 1.60577 1.08199 1.10200 1.50031 0.94535 0.91717 0.96347 0.96579 0.91709 0.94698 0.92929 0.95009 0.94698 0.76039 0.91778 0.91952 0.88166 0.88231 0.91896 0.90305 0.94961 0.89470 0.91174 0.96725 0.88525 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 4 C -0.53 -28.18 8.01 25.60 0.21 -27.98 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.46 9.35 21.45 0.20 -47.26 16 8 Si 0.94 42.63 29.54 68.60 2.03 44.66 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.50 4.50 86.38 0.39 6.89 16 13 N -0.71 -24.65 3.99 -463.04 -1.85 -26.50 16 14 C 0.48 16.35 4.72 87.66 0.41 16.77 16 15 O -0.59 -24.79 15.04 -3.04 -0.05 -24.83 16 16 C 0.10 2.56 0.90 2.80 0.00 2.56 16 17 C -0.14 -2.72 8.69 71.98 0.63 -2.10 16 18 C -0.09 -2.05 4.53 30.65 0.14 -1.91 16 19 C -0.13 -3.13 5.72 30.67 0.18 -2.95 16 20 C -0.11 -2.29 6.09 30.65 0.19 -2.10 16 21 C 0.04 0.96 6.22 86.33 0.54 1.50 16 22 N -0.66 -13.86 6.12 -473.99 -2.90 -16.76 16 23 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 24 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 28 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 29 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.40 12.22 4.69 -92.70 -0.43 11.79 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.61 7.84 -2.39 -0.02 1.60 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 1.02 6.58 -2.39 -0.02 1.01 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.01 0.42 6.40 -2.39 -0.02 0.41 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.35 6.78 7.47 -89.69 -0.67 6.11 16 Total: -1.00 -60.43 329.16 1.56 -58.88 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.12 Total: 25.93 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.25 Total: -14.12 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -4.55 Total: -90.52 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.43 1.56 -58.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315906683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -60.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds