Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 119.99994 * 2 1 4 4 O 1.21281 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47294 * 59.99249 * 5 3 2 7 7 C 1.53009 * 109.46707 * 299.99592 * 5 3 2 8 8 C 1.53001 * 109.46716 * 177.45825 * 7 5 3 9 9 C 1.53006 * 109.46809 * 174.86287 * 8 7 5 10 10 C 1.52995 * 109.47315 * 294.86610 * 8 7 5 11 11 N 1.46899 * 109.47192 * 179.97438 * 5 3 2 12 12 C 1.46898 * 110.99921 * 274.74260 * 11 5 3 13 13 C 1.53001 * 109.46969 * 176.40667 * 12 11 5 14 14 C 1.50700 * 115.54765 * 39.73322 * 13 12 11 15 15 H 1.07996 * 120.00158 * 268.56655 * 14 13 12 16 16 C 1.37880 * 119.99934 * 88.58017 * 14 13 12 17 17 N 1.31511 * 120.00119 * 180.25995 * 16 14 13 18 18 Si 1.86804 * 120.00064 * 0.25148 * 16 14 13 19 19 H 1.48496 * 109.46990 * 91.58139 * 18 16 14 20 20 H 1.48499 * 109.47309 * 211.57994 * 18 16 14 21 21 H 1.48503 * 109.47002 * 331.58336 * 18 16 14 22 22 C 1.52999 * 117.49979 * 254.02338 * 13 12 11 23 23 C 1.52995 * 60.00037 * 252.51356 * 22 13 12 24 24 H 1.08999 * 109.47152 * 299.99708 * 1 2 3 25 25 H 1.09001 * 109.47433 * 60.00397 * 1 2 3 26 26 H 1.08999 * 109.47482 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00137 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46614 * 297.45922 * 7 5 3 29 29 H 1.08997 * 109.47127 * 57.45957 * 7 5 3 30 30 H 1.09005 * 109.47085 * 54.86985 * 8 7 5 31 31 H 1.09005 * 109.46727 * 60.00478 * 9 8 7 32 32 H 1.08999 * 109.47170 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47327 * 300.00598 * 9 8 7 34 34 H 1.08996 * 109.47218 * 300.00175 * 10 8 7 35 35 H 1.08997 * 109.47106 * 60.00443 * 10 8 7 36 36 H 1.09002 * 109.46828 * 179.97438 * 10 8 7 37 37 H 1.00903 * 111.00080 * 38.70147 * 11 5 3 38 38 H 1.08993 * 109.47624 * 296.40943 * 12 11 5 39 39 H 1.09000 * 109.47172 * 56.41068 * 12 11 5 40 40 H 0.96997 * 120.00469 * 179.97438 * 17 16 14 41 41 H 1.09000 * 117.49749 * 0.02562 * 22 13 12 42 42 H 1.08998 * 117.49655 * 145.02053 * 22 13 12 43 43 H 1.09006 * 117.49971 * 252.51147 * 23 22 13 44 44 H 1.08997 * 117.52294 * 107.48242 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0089 0.6535 -0.8907 7 6 4.1563 0.4457 1.2485 8 6 5.6849 0.3901 1.2163 9 6 6.2008 -0.2158 2.5231 10 6 6.1392 -0.4747 0.0388 11 7 4.1355 2.5522 -0.0011 12 6 4.2035 3.0860 -1.3680 13 6 4.6306 4.5545 -1.3213 14 6 5.6973 4.8893 -0.3108 15 1 5.4189 5.2032 0.6843 16 6 7.0286 4.7950 -0.6568 17 7 7.9596 5.0822 0.2266 18 14 7.5100 4.2591 -2.3803 19 1 7.6605 5.4556 -3.2468 20 1 8.7975 3.5210 -2.3278 21 1 6.4547 3.3746 -2.9366 22 6 3.5581 5.6111 -1.5936 23 6 4.6383 5.3302 -2.6400 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 3.8309 0.9851 2.1380 29 1 3.7562 -0.5679 1.2715 30 1 6.0828 1.3985 1.1014 31 1 5.8029 -1.2241 2.6380 32 1 7.2898 -0.2558 2.5001 33 1 5.8771 0.4003 3.3620 34 1 5.7413 -1.4829 0.1537 35 1 5.7717 -0.0429 -0.8921 36 1 7.2282 -0.5138 0.0157 37 1 3.5631 3.1383 0.5880 38 1 4.9300 2.5145 -1.9455 39 1 3.2231 3.0076 -1.8379 40 1 8.8962 5.0156 -0.0167 41 1 2.5482 5.2601 -1.8055 42 1 3.6238 6.5487 -1.0416 43 1 5.4147 6.0830 -2.7766 44 1 4.3395 4.7943 -3.5409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387205797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = -22.148079 kcal Electronic energy + Delta-G solvation = -21970.783374 eV Core-core repulsion = 18923.526465 eV Total energy + Delta-G solvation = -3047.256909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90880 -37.25044 -36.40731 -34.64750 -33.48065 -31.86786 -29.52723 -26.88677 -26.72102 -25.68299 -24.27744 -22.82039 -21.51227 -20.25823 -19.47658 -18.78833 -17.44616 -16.25576 -15.92232 -15.39720 -14.90435 -14.64177 -14.29023 -14.02629 -13.74034 -13.55641 -13.15526 -12.92312 -12.63106 -12.44991 -12.36015 -12.19535 -12.03984 -11.82930 -11.48682 -11.28789 -10.97411 -10.67595 -10.49963 -10.33692 -10.26552 -10.13909 -9.92364 -9.69947 -9.39796 -9.12839 -8.93803 -8.37068 -8.30543 -7.60647 -5.90675 -3.88828 2.76598 3.30070 3.40066 3.48812 3.53625 4.59051 4.65301 4.81163 5.06284 5.10543 5.22224 5.28570 5.36727 5.40383 5.41171 5.49519 5.68128 5.72427 5.85042 5.89392 6.00727 6.07428 6.10737 6.14013 6.19411 6.26971 6.31527 6.36379 6.41339 6.54454 6.58346 6.62073 6.67876 6.85571 7.04133 7.12822 7.24836 7.44115 7.79319 7.95267 8.18743 8.32162 8.70915 9.12856 9.74027 11.21988 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.007659 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.144952 B = 3654.855120 C = 4843.848551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.481 3.519 4 O -0.535 6.535 5 C 0.064 3.936 6 H 0.098 0.902 7 C -0.089 4.089 8 C -0.095 4.095 9 C -0.143 4.143 10 C -0.145 4.145 11 N -0.624 5.624 12 C 0.097 3.903 13 C 0.005 3.995 14 C -0.454 4.454 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.286 1.286 20 H -0.299 1.299 21 H -0.261 1.261 22 C -0.183 4.183 23 C -0.204 4.204 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.400 0.600 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.352 0.648 38 H 0.060 0.940 39 H 0.009 0.991 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.342 -14.574 -0.331 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.266 3.734 4 O -0.411 6.411 5 C -0.051 4.051 6 H 0.116 0.884 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.201 4.201 10 C -0.202 4.202 11 N -0.254 5.254 12 C -0.032 4.032 13 C 0.004 3.996 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.122 4.122 17 N -0.542 5.542 18 Si 0.709 3.291 19 H -0.212 1.212 20 H -0.226 1.226 21 H -0.186 1.186 22 C -0.220 4.220 23 C -0.242 4.242 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.173 0.827 38 H 0.078 0.922 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.921 -13.941 -0.277 16.553 hybrid contribution -0.482 -0.593 -1.285 1.495 sum -9.403 -14.534 -1.563 17.381 Atomic orbital electron populations 1.21482 0.80554 1.01654 1.02100 1.46018 1.07344 1.09125 1.76804 1.22532 0.92511 0.83470 0.74867 1.90704 1.70372 1.31308 1.48714 1.21971 0.86949 0.95371 1.00763 0.88390 1.21508 0.96728 0.98026 0.96529 1.21073 0.94055 1.02218 0.94019 1.21812 1.00830 0.99709 0.97703 1.21847 1.01069 0.98544 0.98721 1.60645 1.53708 0.99298 1.11797 1.21693 0.96496 0.96494 0.88508 1.19458 0.97415 0.88042 0.94696 1.20046 0.87930 1.43702 0.97520 0.90547 1.24849 0.96334 0.94461 0.96521 1.69893 1.00158 1.49859 1.34322 0.86888 0.77308 0.78951 0.85931 1.21235 1.22592 1.18576 1.22876 0.93060 1.02297 1.03800 1.22929 1.02538 1.05391 0.93298 0.92467 0.92599 0.91106 0.76666 0.91528 0.92553 0.87594 0.93778 0.92902 0.92827 0.93780 0.92743 0.92955 0.82665 0.92179 0.97327 0.93031 0.91211 0.89722 0.89541 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.70 59.84 0.64 1.47 16 2 N -0.74 -8.12 5.59 -67.08 -0.38 -8.50 16 3 C 0.48 7.33 6.95 -10.99 -0.08 7.26 16 4 O -0.54 -10.39 15.35 5.56 0.09 -10.30 16 5 C 0.06 0.98 2.24 -68.86 -0.15 0.82 16 6 H 0.10 1.40 6.15 -51.93 -0.32 1.09 16 7 C -0.09 -1.17 4.30 -26.73 -0.11 -1.28 16 8 C -0.10 -1.37 2.85 -90.62 -0.26 -1.63 16 9 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 10 C -0.14 -1.89 8.95 37.16 0.33 -1.56 16 11 N -0.62 -12.20 4.71 -107.95 -0.51 -12.71 16 12 C 0.10 2.07 5.30 -3.82 -0.02 2.04 16 13 C 0.01 0.12 1.11 -155.66 -0.17 -0.05 16 14 C -0.45 -12.55 8.76 -34.44 -0.30 -12.85 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 18 Si 0.88 22.09 24.97 -169.99 -4.24 17.85 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.26 -6.21 5.44 56.52 0.31 -5.90 16 22 C -0.18 -4.00 9.88 -26.73 -0.26 -4.26 16 23 C -0.20 -4.55 7.45 -26.73 -0.20 -4.75 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.40 3.19 8.21 -40.82 -0.34 2.85 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 30 H 0.11 2.00 7.53 -51.93 -0.39 1.61 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.35 7.43 7.69 -39.29 -0.30 7.13 16 38 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 39 H 0.01 0.18 7.43 -51.93 -0.39 -0.20 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 42 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.09 2.02 7.00 -51.93 -0.36 1.65 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -31.85 346.03 -7.29 -39.14 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.89 Total: 10.11 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.34 Total: -14.11 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.11 Total: -47.90 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.24 Total: 17.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.85 -7.29 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387205797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.996 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds