Wall clock time and date at job start Mon Mar 30 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 119.99994 * 2 1 4 4 O 1.21281 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47294 * 59.99249 * 5 3 2 7 7 C 1.53009 * 109.46707 * 299.99592 * 5 3 2 8 8 C 1.53001 * 109.46716 * 177.45825 * 7 5 3 9 9 C 1.53006 * 109.46809 * 174.86287 * 8 7 5 10 10 C 1.52995 * 109.47315 * 294.86610 * 8 7 5 11 11 N 1.46899 * 109.47192 * 179.97438 * 5 3 2 12 12 C 1.46898 * 110.99921 * 274.74260 * 11 5 3 13 13 C 1.53001 * 109.46969 * 176.40667 * 12 11 5 14 14 C 1.50700 * 115.54765 * 39.73322 * 13 12 11 15 15 H 1.07996 * 120.00158 * 268.56655 * 14 13 12 16 16 C 1.37880 * 119.99934 * 88.58017 * 14 13 12 17 17 N 1.31511 * 120.00119 * 180.25995 * 16 14 13 18 18 Si 1.86804 * 120.00064 * 0.25148 * 16 14 13 19 19 H 1.48496 * 109.46990 * 91.58139 * 18 16 14 20 20 H 1.48499 * 109.47309 * 211.57994 * 18 16 14 21 21 H 1.48503 * 109.47002 * 331.58336 * 18 16 14 22 22 C 1.52999 * 117.49979 * 254.02338 * 13 12 11 23 23 C 1.52995 * 60.00037 * 252.51356 * 22 13 12 24 24 H 1.08999 * 109.47152 * 299.99708 * 1 2 3 25 25 H 1.09001 * 109.47433 * 60.00397 * 1 2 3 26 26 H 1.08999 * 109.47482 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00137 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46614 * 297.45922 * 7 5 3 29 29 H 1.08997 * 109.47127 * 57.45957 * 7 5 3 30 30 H 1.09005 * 109.47085 * 54.86985 * 8 7 5 31 31 H 1.09005 * 109.46727 * 60.00478 * 9 8 7 32 32 H 1.08999 * 109.47170 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47327 * 300.00598 * 9 8 7 34 34 H 1.08996 * 109.47218 * 300.00175 * 10 8 7 35 35 H 1.08997 * 109.47106 * 60.00443 * 10 8 7 36 36 H 1.09002 * 109.46828 * 179.97438 * 10 8 7 37 37 H 1.00903 * 111.00080 * 38.70147 * 11 5 3 38 38 H 1.08993 * 109.47624 * 296.40943 * 12 11 5 39 39 H 1.09000 * 109.47172 * 56.41068 * 12 11 5 40 40 H 0.96997 * 120.00469 * 179.97438 * 17 16 14 41 41 H 1.09000 * 117.49749 * 0.02562 * 22 13 12 42 42 H 1.08998 * 117.49655 * 145.02053 * 22 13 12 43 43 H 1.09006 * 117.49971 * 252.51147 * 23 22 13 44 44 H 1.08997 * 117.52294 * 107.48242 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0089 0.6535 -0.8907 7 6 4.1563 0.4457 1.2485 8 6 5.6849 0.3901 1.2163 9 6 6.2008 -0.2158 2.5231 10 6 6.1392 -0.4747 0.0388 11 7 4.1355 2.5522 -0.0011 12 6 4.2035 3.0860 -1.3680 13 6 4.6306 4.5545 -1.3213 14 6 5.6973 4.8893 -0.3108 15 1 5.4189 5.2032 0.6843 16 6 7.0286 4.7950 -0.6568 17 7 7.9596 5.0822 0.2266 18 14 7.5100 4.2591 -2.3803 19 1 7.6605 5.4556 -3.2468 20 1 8.7975 3.5210 -2.3278 21 1 6.4547 3.3746 -2.9366 22 6 3.5581 5.6111 -1.5936 23 6 4.6383 5.3302 -2.6400 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 3.8309 0.9851 2.1380 29 1 3.7562 -0.5679 1.2715 30 1 6.0828 1.3985 1.1014 31 1 5.8029 -1.2241 2.6380 32 1 7.2898 -0.2558 2.5001 33 1 5.8771 0.4003 3.3620 34 1 5.7413 -1.4829 0.1537 35 1 5.7717 -0.0429 -0.8921 36 1 7.2282 -0.5138 0.0157 37 1 3.5631 3.1383 0.5880 38 1 4.9300 2.5145 -1.9455 39 1 3.2231 3.0076 -1.8379 40 1 8.8962 5.0156 -0.0167 41 1 2.5482 5.2601 -1.8055 42 1 3.6238 6.5487 -1.0416 43 1 5.4147 6.0830 -2.7766 44 1 4.3395 4.7943 -3.5409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387205797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:28 Heat of formation + Delta-G solvation = -45.194780 kcal Electronic energy + Delta-G solvation = -21971.782754 eV Core-core repulsion = 18923.526465 eV Total energy + Delta-G solvation = -3048.256289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12555 -38.93306 -37.68147 -35.73772 -34.85660 -34.06039 -30.80540 -27.91482 -27.84875 -27.53267 -25.87303 -24.06000 -23.29258 -21.38858 -20.92497 -20.41281 -18.68737 -18.11947 -17.09090 -16.89526 -16.57363 -15.81867 -15.70709 -15.34119 -15.22411 -14.79685 -14.61137 -14.56197 -14.31099 -13.82800 -13.72974 -13.23521 -13.12555 -13.01860 -12.88483 -12.74438 -12.45808 -12.38541 -12.11740 -11.88730 -11.77859 -11.43731 -11.38078 -11.26509 -10.99565 -10.85294 -10.49258 -10.20520 -10.11330 -9.09037 -8.13202 -6.14866 1.39675 1.42089 1.54431 1.59125 2.32226 2.47777 3.09449 3.22539 3.44402 3.77312 4.03837 4.13821 4.20295 4.25555 4.35305 4.37665 4.46260 4.51355 4.58643 4.62387 4.70848 4.79731 4.82840 4.90548 4.92613 4.95600 4.97984 5.05070 5.09541 5.14074 5.20636 5.34390 5.45143 5.46280 5.50244 5.60990 5.81475 5.82186 6.25158 6.44523 6.53545 6.63222 6.88216 7.25549 7.50867 9.03182 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.007659 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.144952 B = 3654.855120 C = 4843.848551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.719 5.719 3 C 0.481 3.519 4 O -0.583 6.583 5 C 0.066 3.934 6 H 0.113 0.887 7 C -0.081 4.081 8 C -0.095 4.095 9 C -0.140 4.140 10 C -0.141 4.141 11 N -0.642 5.642 12 C 0.111 3.889 13 C -0.019 4.019 14 C -0.444 4.444 15 H 0.028 0.972 16 C 0.026 3.974 17 N -0.953 5.953 18 Si 0.937 3.063 19 H -0.280 1.280 20 H -0.302 1.302 21 H -0.235 1.235 22 C -0.173 4.173 23 C -0.195 4.195 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.418 0.582 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.338 0.662 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -17.744 -2.027 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.267 3.733 4 O -0.463 6.463 5 C -0.049 4.049 6 H 0.130 0.870 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.197 4.197 10 C -0.198 4.198 11 N -0.271 5.271 12 C -0.019 4.019 13 C -0.020 4.020 14 C -0.482 4.482 15 H 0.047 0.953 16 C -0.170 4.170 17 N -0.594 5.594 18 Si 0.764 3.236 19 H -0.207 1.207 20 H -0.230 1.230 21 H -0.158 1.158 22 C -0.210 4.210 23 C -0.232 4.232 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.132 0.868 27 H 0.255 0.745 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.456 -17.175 -1.983 20.205 hybrid contribution -0.083 0.389 -0.637 0.751 sum -10.538 -16.786 -2.620 19.992 Atomic orbital electron populations 1.21649 0.79223 1.04167 1.01019 1.45837 1.08197 1.08597 1.74583 1.22368 0.92365 0.83945 0.74658 1.90688 1.71039 1.33242 1.51332 1.22045 0.87423 0.93025 1.02358 0.86971 1.21487 0.95724 0.99816 0.94872 1.20969 0.94909 0.99750 0.95788 1.21773 1.00516 1.01070 0.96323 1.21822 1.00632 0.99990 0.97399 1.60598 1.54546 1.01228 1.10723 1.21467 0.96441 0.94462 0.89484 1.19449 0.97469 0.90147 0.94934 1.20062 0.89259 1.42418 0.96494 0.95339 1.25590 0.96232 0.94808 1.00416 1.70044 1.00483 1.52181 1.36682 0.85953 0.77344 0.79051 0.81288 1.20670 1.22993 1.15841 1.22847 0.93718 1.01193 1.03220 1.22965 1.02069 1.04578 0.93626 0.93559 0.93758 0.86758 0.74465 0.92978 0.88221 0.93115 0.90672 0.93553 0.93750 0.90233 0.93579 0.93886 0.84225 0.92363 0.96688 0.93172 0.89311 0.90641 0.90698 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.70 127.77 1.37 2.71 16 2 N -0.72 -13.38 5.59 -484.53 -2.71 -16.09 16 3 C 0.48 13.83 6.95 87.66 0.61 14.44 16 4 O -0.58 -22.36 15.35 -3.03 -0.05 -22.41 16 5 C 0.07 1.90 2.24 44.17 0.10 2.00 16 6 H 0.11 2.93 6.15 -2.39 -0.01 2.91 16 7 C -0.08 -1.97 4.30 30.60 0.13 -1.84 16 8 C -0.10 -2.68 2.85 -10.79 -0.03 -2.72 16 9 C -0.14 -3.37 9.19 71.98 0.66 -2.71 16 10 C -0.14 -3.38 8.95 71.98 0.64 -2.74 16 11 N -0.64 -25.41 4.71 -495.45 -2.33 -27.74 16 12 C 0.11 4.62 5.30 86.30 0.46 5.07 16 13 C -0.02 -0.89 1.11 -52.93 -0.06 -0.95 16 14 C -0.44 -25.51 8.76 25.60 0.22 -25.28 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 16 C 0.03 1.50 5.47 84.66 0.46 1.96 16 17 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 18 Si 0.94 45.66 24.97 68.60 1.71 47.37 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 21 H -0.24 -10.38 5.44 99.48 0.54 -9.84 16 22 C -0.17 -7.42 9.88 30.59 0.30 -7.11 16 23 C -0.19 -8.33 7.45 30.59 0.23 -8.10 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.42 4.67 8.21 -92.71 -0.76 3.91 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.57 7.49 -2.39 -0.02 1.56 16 30 H 0.05 2.00 7.53 -2.38 -0.02 1.98 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.17 6.52 -2.39 -0.02 1.15 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.34 14.87 7.69 -89.69 -0.69 14.18 16 38 H 0.06 2.41 6.61 -2.39 -0.02 2.40 16 39 H 0.02 0.61 7.43 -2.39 -0.02 0.59 16 40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.09 3.49 8.08 -2.39 -0.02 3.47 16 42 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.07 3.38 7.00 -2.38 -0.02 3.36 16 44 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -73.31 346.03 1.38 -71.93 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.64 Total: 32.36 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.10 Total: -25.27 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -4.74 Total: -103.98 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.71 Total: 47.37 kcal Total: -73.31 1.38 -71.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387205797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.733 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds