Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47175 * 120.00389 * 2 1 3 5 5 C 1.53000 * 109.47220 * 175.00230 * 4 2 1 6 6 H 1.09003 * 115.56261 * 330.68483 * 5 4 2 7 7 C 1.53003 * 117.49929 * 116.37568 * 5 4 2 8 8 C 1.53002 * 117.49776 * 185.00131 * 5 4 2 9 9 H 1.08997 * 117.51542 * 359.97438 * 8 5 4 10 10 C 1.52997 * 117.49707 * 145.01813 * 8 5 4 11 11 N 1.46904 * 109.46950 * 185.00935 * 10 8 5 12 12 C 1.46899 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47107 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 H 1.09004 * 109.47178 * 300.00027 * 1 2 3 26 26 H 1.09009 * 109.46774 * 59.99410 * 1 2 3 27 27 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47229 * 240.00759 * 2 1 3 29 29 H 1.08999 * 109.46947 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47607 * 300.00330 * 3 2 1 31 31 H 1.09003 * 109.46438 * 60.00274 * 3 2 1 32 32 H 1.08994 * 109.47392 * 54.99640 * 4 2 1 33 33 H 1.09007 * 109.46837 * 294.99666 * 4 2 1 34 34 H 1.08994 * 117.49788 * 0.02562 * 7 5 4 35 35 H 1.09003 * 117.51535 * 214.96424 * 7 5 4 36 36 H 1.09003 * 109.47435 * 65.01681 * 10 8 5 37 37 H 1.08995 * 109.47319 * 305.01006 * 10 8 5 38 38 H 1.00905 * 110.99940 * 303.95704 * 11 10 8 39 39 H 1.09002 * 109.47043 * 60.00207 * 12 11 10 40 40 H 1.09001 * 109.47354 * 300.00146 * 12 11 10 41 41 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 43 43 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 44 44 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1879 6 1 3.9930 -0.8801 0.1867 7 6 4.3695 -0.1013 2.2654 8 6 4.2608 -1.6273 2.2936 9 1 3.6326 -2.0727 3.0650 10 6 5.5044 -2.4314 1.9093 11 7 5.9565 -3.2164 3.0658 12 6 7.1513 -4.0036 2.7330 13 6 7.5844 -4.7943 3.9406 14 8 6.9589 -4.7107 4.9763 15 7 8.6667 -5.5944 3.8696 16 6 9.0873 -6.3635 5.0434 17 6 10.3131 -7.1709 4.7020 18 1 10.7367 -7.1163 3.7101 19 6 10.8944 -7.9786 5.6564 20 7 11.9644 -8.6828 5.3586 21 14 10.1620 -8.0725 7.3723 22 1 9.1543 -9.1622 7.4215 23 1 11.2394 -8.3500 8.3558 24 1 9.5101 -6.7801 7.7037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9565 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.8125 0.4565 3.0181 35 1 5.3272 0.3296 1.9734 36 1 6.2970 -1.7496 1.6009 37 1 5.2624 -3.1035 1.0861 38 1 6.1255 -2.6214 3.8630 39 1 7.9554 -3.3330 2.4299 40 1 6.9204 -4.6867 1.9156 41 1 9.1666 -5.6615 3.0411 42 1 8.2831 -7.0345 5.3454 43 1 9.3175 -5.6810 5.8615 44 1 12.3731 -9.2513 6.0300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387749902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -39.647795 kcal Electronic energy + Delta-G solvation = -19482.536243 eV Core-core repulsion = 16434.520489 eV Total energy + Delta-G solvation = -3048.015753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17156 -38.68847 -36.19046 -34.67943 -34.13320 -32.34520 -29.26027 -27.96009 -27.48581 -26.76051 -24.13199 -21.86685 -21.49243 -20.65851 -20.29538 -19.78926 -17.40545 -16.41829 -15.75160 -15.66505 -15.36281 -15.15286 -14.76402 -14.34350 -14.06248 -13.86195 -13.64640 -13.32335 -13.14235 -12.71864 -12.59397 -12.45854 -12.25632 -12.19667 -11.81447 -11.68791 -11.53072 -11.29600 -11.14294 -11.01215 -10.97089 -10.75412 -10.10156 -9.96771 -9.91041 -9.49305 -9.18951 -8.77520 -8.43328 -8.12308 -6.21386 -4.23588 3.24459 3.28586 3.33937 3.42794 3.46712 3.74944 4.22703 4.33966 4.45615 4.54629 4.61731 4.72263 4.78688 4.94001 5.13915 5.18740 5.21382 5.27629 5.30213 5.32845 5.38622 5.41195 5.46054 5.51096 5.57503 5.59254 5.63317 5.66419 5.72810 5.85001 5.96004 5.98850 6.04335 6.16415 6.77454 6.93924 7.08195 7.24622 7.35331 7.40923 8.14774 8.52726 8.75672 8.95942 9.38950 10.90536 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056938 B = 0.002288 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.648578 B =12234.182624 C =12380.766889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.142 4.142 6 H 0.102 0.898 7 C -0.179 4.179 8 C -0.146 4.146 9 H 0.114 0.886 10 C 0.091 3.909 11 N -0.671 5.671 12 C 0.040 3.960 13 C 0.499 3.501 14 O -0.546 6.546 15 N -0.708 5.708 16 C 0.221 3.779 17 C -0.544 4.544 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.352 0.648 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.396 0.604 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 18.778 -11.936 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.122 4.122 5 C -0.161 4.161 6 H 0.120 0.880 7 C -0.216 4.216 8 C -0.164 4.164 9 H 0.132 0.868 10 C -0.038 4.038 11 N -0.304 5.304 12 C -0.092 4.092 13 C 0.283 3.717 14 O -0.424 6.424 15 N -0.357 5.357 16 C 0.099 3.901 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.530 5.530 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.229 0.771 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.912 18.166 -11.211 28.519 hybrid contribution 0.783 0.446 0.420 0.994 sum -18.129 18.611 -10.791 28.134 Atomic orbital electron populations 1.21855 0.95383 1.01734 1.01647 1.21115 0.95441 0.96480 0.98286 1.21841 1.01362 0.95799 1.01315 1.21253 0.92590 1.00526 0.97826 1.22392 0.94344 1.04472 0.94863 0.87977 1.23236 1.01819 0.94736 1.01783 1.22427 0.99583 0.92463 1.01926 0.86818 1.21522 0.94175 0.94723 0.93408 1.60078 1.33654 1.29493 1.07133 1.21818 0.92351 0.97598 0.97445 1.20412 0.80991 0.80790 0.89514 1.90653 1.54466 1.65739 1.31552 1.46168 1.28270 1.44629 1.16644 1.19478 0.95379 0.90919 0.84339 1.21102 1.10409 1.26092 1.00573 0.90262 1.24806 0.94480 0.94510 0.98890 1.69882 1.20427 1.27675 1.35005 0.86801 0.79149 0.79669 0.83978 1.19814 1.20919 1.18520 0.92761 0.92816 0.92671 0.91264 0.92351 0.93152 0.92893 0.91468 0.91824 0.88924 0.89135 0.95254 0.90646 0.82908 0.92688 0.88386 0.77073 0.96141 0.95780 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.60 2.88 -90.62 -0.26 -0.86 16 3 C -0.15 -0.89 9.01 37.16 0.33 -0.56 16 4 C -0.08 -0.60 4.96 -26.73 -0.13 -0.74 16 5 C -0.14 -1.10 4.44 -90.62 -0.40 -1.50 16 6 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 7 C -0.18 -1.44 9.82 -26.72 -0.26 -1.70 16 8 C -0.15 -1.36 5.67 -90.61 -0.51 -1.88 16 9 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 10 C 0.09 0.93 5.97 -3.82 -0.02 0.91 16 11 N -0.67 -9.00 6.12 -115.05 -0.70 -9.70 16 12 C 0.04 0.55 6.17 -4.98 -0.03 0.52 16 13 C 0.50 9.54 7.87 -10.98 -0.09 9.45 16 14 O -0.55 -12.61 16.20 5.56 0.09 -12.52 16 15 N -0.71 -14.38 5.55 -61.47 -0.34 -14.72 16 16 C 0.22 5.50 4.50 -5.19 -0.02 5.48 16 17 C -0.54 -15.02 9.83 -34.44 -0.34 -15.35 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 21 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 34 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 35 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.03 0.28 7.88 -51.93 -0.41 -0.13 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.35 4.91 8.43 -39.29 -0.33 4.58 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.40 7.00 8.32 -40.82 -0.34 6.66 16 42 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 43 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -31.61 360.34 -9.04 -40.65 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.12 Total: 4.41 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.49 Total: -4.68 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.27 Total: -50.25 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.61 -9.04 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387749902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.000 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds