Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47175 * 120.00389 * 2 1 3 5 5 C 1.53000 * 109.47220 * 175.00230 * 4 2 1 6 6 H 1.09003 * 115.56261 * 330.68483 * 5 4 2 7 7 C 1.53003 * 117.49929 * 116.37568 * 5 4 2 8 8 C 1.53002 * 117.49776 * 185.00131 * 5 4 2 9 9 H 1.08997 * 117.51542 * 359.97438 * 8 5 4 10 10 C 1.52997 * 117.49707 * 145.01813 * 8 5 4 11 11 N 1.46904 * 109.46950 * 185.00935 * 10 8 5 12 12 C 1.46899 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47107 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 H 1.09004 * 109.47178 * 300.00027 * 1 2 3 26 26 H 1.09009 * 109.46774 * 59.99410 * 1 2 3 27 27 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47229 * 240.00759 * 2 1 3 29 29 H 1.08999 * 109.46947 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47607 * 300.00330 * 3 2 1 31 31 H 1.09003 * 109.46438 * 60.00274 * 3 2 1 32 32 H 1.08994 * 109.47392 * 54.99640 * 4 2 1 33 33 H 1.09007 * 109.46837 * 294.99666 * 4 2 1 34 34 H 1.08994 * 117.49788 * 0.02562 * 7 5 4 35 35 H 1.09003 * 117.51535 * 214.96424 * 7 5 4 36 36 H 1.09003 * 109.47435 * 65.01681 * 10 8 5 37 37 H 1.08995 * 109.47319 * 305.01006 * 10 8 5 38 38 H 1.00905 * 110.99940 * 303.95704 * 11 10 8 39 39 H 1.09002 * 109.47043 * 60.00207 * 12 11 10 40 40 H 1.09001 * 109.47354 * 300.00146 * 12 11 10 41 41 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 43 43 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 44 44 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1879 6 1 3.9930 -0.8801 0.1867 7 6 4.3695 -0.1013 2.2654 8 6 4.2608 -1.6273 2.2936 9 1 3.6326 -2.0727 3.0650 10 6 5.5044 -2.4314 1.9093 11 7 5.9565 -3.2164 3.0658 12 6 7.1513 -4.0036 2.7330 13 6 7.5844 -4.7943 3.9406 14 8 6.9589 -4.7107 4.9763 15 7 8.6667 -5.5944 3.8696 16 6 9.0873 -6.3635 5.0434 17 6 10.3131 -7.1709 4.7020 18 1 10.7367 -7.1163 3.7101 19 6 10.8944 -7.9786 5.6564 20 7 11.9644 -8.6828 5.3586 21 14 10.1620 -8.0725 7.3723 22 1 9.1543 -9.1622 7.4215 23 1 11.2394 -8.3500 8.3558 24 1 9.5101 -6.7801 7.7037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9565 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.8125 0.4565 3.0181 35 1 5.3272 0.3296 1.9734 36 1 6.2970 -1.7496 1.6009 37 1 5.2624 -3.1035 1.0861 38 1 6.1255 -2.6214 3.8630 39 1 7.9554 -3.3330 2.4299 40 1 6.9204 -4.6867 1.9156 41 1 9.1666 -5.6615 3.0411 42 1 8.2831 -7.0345 5.3454 43 1 9.3175 -5.6810 5.8615 44 1 12.3731 -9.2513 6.0300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387749902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -60.918827 kcal Electronic energy + Delta-G solvation = -19483.458624 eV Core-core repulsion = 16434.520489 eV Total energy + Delta-G solvation = -3048.938135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58800 -39.50112 -36.97380 -36.14364 -35.34700 -34.40169 -30.71721 -29.15434 -27.95266 -27.73817 -25.28436 -23.68077 -22.12929 -21.64623 -21.15294 -20.83128 -19.17733 -17.91599 -17.19169 -17.01690 -16.29636 -16.14412 -15.83166 -15.51959 -15.44263 -14.83150 -14.64891 -14.49157 -14.30607 -14.11174 -13.84026 -13.58761 -13.09562 -13.06602 -13.04051 -12.75168 -12.68134 -12.31462 -12.24667 -11.94016 -11.85965 -11.69869 -11.66076 -11.47712 -10.92555 -10.85355 -10.72602 -10.52213 -9.93221 -9.39133 -8.40717 -6.47638 1.32385 1.34556 1.47155 1.74365 2.27283 2.33376 2.86816 2.94618 3.26301 3.73261 3.93968 3.94887 4.01406 4.16011 4.20795 4.27458 4.37538 4.46027 4.48419 4.63463 4.68513 4.78920 4.82955 4.86209 4.88391 4.90183 4.98187 5.01938 5.02608 5.11226 5.21361 5.25589 5.32794 5.36009 5.45665 5.48827 5.52463 5.57819 5.94997 6.10854 6.33284 6.53555 6.86885 7.15455 7.43204 8.73909 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056938 B = 0.002288 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.648578 B =12234.182624 C =12380.766889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.130 4.130 6 H 0.110 0.890 7 C -0.174 4.174 8 C -0.159 4.159 9 H 0.096 0.904 10 C 0.096 3.904 11 N -0.689 5.689 12 C 0.054 3.946 13 C 0.497 3.503 14 O -0.588 6.588 15 N -0.707 5.707 16 C 0.232 3.768 17 C -0.547 4.547 18 H 0.060 0.940 19 C 0.026 3.974 20 N -0.930 5.930 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.262 1.262 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.346 0.654 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.409 0.591 42 H 0.009 0.991 43 H 0.012 0.988 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.084 19.959 -12.750 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.121 4.121 5 C -0.148 4.148 6 H 0.128 0.872 7 C -0.210 4.210 8 C -0.177 4.177 9 H 0.114 0.886 10 C -0.033 4.033 11 N -0.321 5.321 12 C -0.078 4.078 13 C 0.284 3.716 14 O -0.468 6.468 15 N -0.358 5.358 16 C 0.108 3.892 17 C -0.585 4.585 18 H 0.079 0.921 19 C -0.175 4.175 20 N -0.569 5.569 21 Si 0.762 3.238 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.245 0.755 42 H 0.027 0.973 43 H 0.030 0.970 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.806 19.361 -12.070 30.213 hybrid contribution 1.045 0.107 0.609 1.214 sum -18.761 19.468 -11.461 29.366 Atomic orbital electron populations 1.21852 0.95063 1.01773 1.01919 1.21101 0.95725 0.96549 0.97770 1.21825 1.01232 0.95583 1.01518 1.21243 0.92290 1.00320 0.98232 1.22422 0.94554 1.03079 0.94781 0.87226 1.23270 1.02206 0.93720 1.01846 1.22322 0.99587 0.93184 1.02639 0.88560 1.21543 0.94659 0.94787 0.92267 1.60095 1.33551 1.30261 1.08205 1.21763 0.93474 0.97802 0.94761 1.21362 0.79596 0.79997 0.90635 1.90632 1.55554 1.66926 1.33737 1.46023 1.29162 1.44652 1.15946 1.19073 0.93807 0.90547 0.85760 1.21306 1.11122 1.26225 0.99852 0.92138 1.25609 0.94844 0.94279 1.02743 1.69980 1.21757 1.28658 1.36518 0.85848 0.78713 0.79634 0.79631 1.19051 1.19734 1.18591 0.92821 0.92232 0.92770 0.91152 0.92498 0.92616 0.93054 0.92012 0.92088 0.88831 0.88477 0.93899 0.90118 0.83563 0.89816 0.86185 0.75500 0.97295 0.97034 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.19 71.98 0.66 -0.89 16 2 C -0.09 -1.04 2.88 -10.79 -0.03 -1.07 16 3 C -0.14 -1.52 9.01 71.98 0.65 -0.87 16 4 C -0.08 -1.09 4.96 30.59 0.15 -0.94 16 5 C -0.13 -1.78 4.44 -10.79 -0.05 -1.83 16 6 H 0.11 1.37 8.08 -2.39 -0.02 1.35 16 7 C -0.17 -2.50 9.82 30.60 0.30 -2.20 16 8 C -0.16 -2.76 5.67 -10.79 -0.06 -2.83 16 9 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 10 C 0.10 1.75 5.97 86.30 0.51 2.26 16 11 N -0.69 -17.29 6.12 -517.92 -3.17 -20.46 16 12 C 0.05 1.34 6.17 85.56 0.53 1.87 16 13 C 0.50 18.43 7.87 87.66 0.69 19.11 16 14 O -0.59 -26.96 16.20 -3.02 -0.05 -27.01 16 15 N -0.71 -28.14 5.55 -466.78 -2.59 -30.73 16 16 C 0.23 11.51 4.50 85.63 0.38 11.89 16 17 C -0.55 -30.37 9.83 25.60 0.25 -30.12 16 18 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 19 C 0.03 1.46 5.47 84.66 0.46 1.92 16 20 N -0.93 -55.71 13.96 21.45 0.30 -55.41 16 21 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.61 7.38 -2.39 -0.02 0.60 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.83 7.88 -2.38 -0.02 0.81 16 34 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 35 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 36 H 0.04 0.68 7.88 -2.39 -0.02 0.66 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.35 9.31 8.43 -89.69 -0.76 8.55 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 42 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 43 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 44 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -67.44 360.34 0.21 -67.23 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.62 Total: 23.67 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.45 Total: -3.68 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.46 Total: -106.60 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -67.44 0.21 -67.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387749902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.311 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds