Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99926 * 2 1 4 4 C 1.50706 * 109.47358 * 270.00709 * 3 2 1 5 5 H 1.07992 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99390 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00678 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99249 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47456 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47320 * 120.00102 * 8 6 4 11 11 H 1.48507 * 109.47012 * 239.99648 * 8 6 4 12 12 C 1.34771 * 120.00239 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00576 * 179.97438 * 12 2 1 14 14 C 1.50707 * 119.99908 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47187 * 179.97438 * 14 12 2 16 16 C 1.46899 * 110.99599 * 66.04747 * 15 14 12 17 17 C 1.46894 * 111.00269 * 190.00093 * 15 14 12 18 18 C 1.53783 * 113.61701 * 180.02562 * 17 15 14 19 19 C 1.53785 * 87.07804 * 219.93397 * 18 17 15 20 20 C 1.53006 * 113.61096 * 139.97884 * 19 18 17 21 21 C 1.53002 * 113.61471 * 270.79457 * 19 18 17 22 22 C 1.53781 * 87.17620 * 25.38900 * 19 18 17 23 23 H 1.09003 * 109.46839 * 269.99234 * 1 2 3 24 24 H 1.09001 * 109.47537 * 29.99560 * 1 2 3 25 25 H 1.09003 * 109.47580 * 149.99967 * 1 2 3 26 26 H 1.09004 * 109.46714 * 30.00823 * 3 2 1 27 27 H 1.08998 * 109.47206 * 149.99980 * 3 2 1 28 28 H 0.97000 * 120.00241 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47130 * 60.00325 * 14 12 2 30 30 H 1.08994 * 109.47249 * 300.00111 * 14 12 2 31 31 H 1.08996 * 109.47270 * 183.95197 * 16 15 14 32 32 H 1.08998 * 109.47472 * 303.95277 * 16 15 14 33 33 H 1.09007 * 109.47209 * 63.95555 * 16 15 14 34 34 H 1.09004 * 112.85111 * 311.20201 * 17 15 14 35 35 H 1.08997 * 113.61737 * 105.38463 * 18 17 15 36 36 H 1.09000 * 113.61138 * 334.47603 * 18 17 15 37 37 H 1.09001 * 109.47002 * 181.52532 * 20 19 18 38 38 H 1.08993 * 109.46955 * 301.52970 * 20 19 18 39 39 H 1.09000 * 109.47050 * 61.52798 * 20 19 18 40 40 H 1.08999 * 109.47105 * 298.47603 * 21 19 18 41 41 H 1.09000 * 109.46611 * 58.47476 * 21 19 18 42 42 H 1.08998 * 109.47047 * 178.47668 * 21 19 18 43 43 H 1.08998 * 113.61545 * 89.15547 * 22 19 18 44 44 H 1.08993 * 113.61303 * 220.06004 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1267 2.8777 -1.6726 7 7 3.5541 3.6177 -0.6730 8 14 3.4385 3.4167 -3.4337 9 1 2.8614 2.4162 -4.3672 10 1 2.8015 4.7376 -3.6673 11 1 4.9012 3.5245 -3.6668 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5888 -0.0018 16 6 3.1062 -3.6276 1.2510 17 6 1.6554 -4.8665 -0.2400 18 6 2.6012 -6.0791 -0.2528 19 6 1.7671 -6.6177 -1.4272 20 6 2.6070 -7.2712 -2.5265 21 6 0.5822 -7.4822 -0.9917 22 6 1.3873 -5.1582 -1.7277 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5140 27 1 3.1499 1.1384 0.5138 28 1 4.0309 4.4436 -0.8502 29 1 0.7584 -2.5299 -0.8903 30 1 0.7591 -2.5303 0.8896 31 1 3.8532 -4.4194 1.1956 32 1 3.6030 -2.6694 1.4029 33 1 2.4309 -3.8230 2.0841 34 1 0.7800 -5.0026 0.3951 35 1 2.5370 -6.6925 0.6459 36 1 3.6270 -5.8298 -0.5240 37 1 1.9541 -7.6032 -3.3337 38 1 3.3247 -6.5481 -2.9137 39 1 3.1406 -8.1281 -2.1151 40 1 0.9486 -8.3565 -0.4537 41 1 -0.0708 -6.9018 -0.3400 42 1 0.0247 -7.8042 -1.8713 43 1 2.0807 -4.6567 -2.4028 44 1 0.3446 -5.0292 -2.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395500798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -11.233944 kcal Electronic energy + Delta-G solvation = -21225.495865 eV Core-core repulsion = 18178.712229 eV Total energy + Delta-G solvation = -3046.783636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13097 -38.80497 -35.62286 -34.55138 -32.57234 -30.16214 -28.72796 -27.60167 -27.33863 -25.88472 -25.29769 -24.47759 -22.45230 -20.53905 -18.45110 -18.22918 -16.60103 -16.40024 -15.82369 -15.35455 -14.95179 -14.80326 -14.50915 -14.20538 -13.81293 -13.51813 -13.27891 -12.88758 -12.82582 -12.52010 -12.28000 -12.15200 -11.94272 -11.82379 -11.69779 -11.40253 -11.29562 -11.14743 -10.91080 -10.81757 -10.71898 -10.55453 -10.29233 -10.11343 -10.09354 -9.55225 -8.79492 -8.40444 -8.07129 -7.56482 -6.00828 -4.05154 3.32471 3.39816 3.43474 3.52164 3.76475 4.28836 4.36552 4.49456 4.53679 4.70271 4.74499 5.10817 5.16714 5.30928 5.35237 5.43577 5.45444 5.48617 5.53903 5.63091 5.68346 5.72158 5.74530 5.78602 5.80599 5.85579 5.86304 5.95554 5.99321 6.06111 6.22486 6.32187 6.34180 6.48352 7.01323 7.20141 7.31692 7.48961 7.60676 7.96382 8.27811 8.48639 8.95723 9.19563 9.60112 11.07274 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.004077 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.067925 B = 6866.235512 C = 7243.730046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.524 6.524 14 C 0.039 3.961 15 N -0.511 5.511 16 C 0.022 3.978 17 C 0.053 3.947 18 C -0.119 4.119 19 C -0.091 4.091 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.118 4.118 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -19.760 1.472 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.400 6.400 14 C -0.092 4.092 15 N -0.235 5.235 16 C -0.126 4.126 17 C -0.055 4.055 18 C -0.156 4.156 19 C -0.092 4.092 20 C -0.190 4.190 21 C -0.185 4.185 22 C -0.156 4.156 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.990 -19.487 1.140 20.734 hybrid contribution -0.570 0.365 -0.281 0.733 sum -7.561 -19.122 0.859 20.581 Atomic orbital electron populations 1.21614 0.81677 1.02481 1.00212 1.48168 1.06037 1.07826 1.71929 1.19264 0.92495 0.78059 0.97467 1.21487 1.36230 1.06134 0.92382 0.92409 1.24937 0.95394 0.96429 0.97414 1.69941 1.38578 1.14361 1.30651 0.86445 0.78088 0.78235 0.84667 1.19792 1.21017 1.20877 1.20162 0.88259 0.84693 0.77774 1.90628 1.13672 1.86766 1.48937 1.22012 0.94399 0.90932 1.01901 1.61854 1.24595 1.01100 1.35903 1.22497 0.97380 1.04482 0.88245 1.23173 0.96104 0.89032 0.97197 1.23113 0.99255 0.95522 0.97727 1.21683 0.96276 0.94825 0.96411 1.21698 0.99370 1.00455 0.97526 1.21597 0.96733 0.99075 1.01045 1.23173 1.01443 0.94727 0.96228 0.93940 0.90763 0.92669 0.95127 0.93904 0.92823 0.88679 0.93000 0.91702 0.89078 0.96808 0.92125 0.91892 0.89032 0.92813 0.92199 0.92816 0.92548 0.92595 0.92449 0.88885 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.61 -13.13 2.86 -182.95 -0.52 -13.65 16 3 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 4 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.51 10.78 7.37 -10.98 -0.08 10.70 16 13 O -0.52 -13.39 13.91 5.56 0.08 -13.32 16 14 C 0.04 0.61 3.97 -4.97 -0.02 0.59 16 15 N -0.51 -7.87 4.47 -235.24 -1.05 -8.92 16 16 C 0.02 0.33 8.97 60.06 0.54 0.86 16 17 C 0.05 0.64 2.85 -66.81 -0.19 0.45 16 18 C -0.12 -1.25 5.76 -25.92 -0.15 -1.40 16 19 C -0.09 -0.86 1.39 -153.69 -0.21 -1.07 16 20 C -0.13 -1.18 9.18 37.16 0.34 -0.84 16 21 C -0.13 -1.01 9.07 37.16 0.34 -0.67 16 22 C -0.12 -1.32 6.81 -25.83 -0.18 -1.49 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 25 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.10 1.38 7.17 -51.93 -0.37 1.00 16 30 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 32 H 0.09 1.67 5.82 -51.93 -0.30 1.37 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.68 7.64 -51.93 -0.40 0.28 16 35 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.44 7.34 -51.93 -0.38 0.06 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 1.21 7.99 -51.93 -0.41 0.79 16 44 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.92 349.06 -7.92 -40.84 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.96 Total: -2.98 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 0.55 Total: 1.82 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.84 Total: -48.83 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.92 -7.92 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395500798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.604 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds