Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99926 * 2 1 4 4 C 1.50706 * 109.47358 * 270.00709 * 3 2 1 5 5 H 1.07992 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99390 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00678 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99249 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47456 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47320 * 120.00102 * 8 6 4 11 11 H 1.48507 * 109.47012 * 239.99648 * 8 6 4 12 12 C 1.34771 * 120.00239 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00576 * 179.97438 * 12 2 1 14 14 C 1.50707 * 119.99908 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47187 * 179.97438 * 14 12 2 16 16 C 1.46899 * 110.99599 * 66.04747 * 15 14 12 17 17 C 1.46894 * 111.00269 * 190.00093 * 15 14 12 18 18 C 1.53783 * 113.61701 * 180.02562 * 17 15 14 19 19 C 1.53785 * 87.07804 * 219.93397 * 18 17 15 20 20 C 1.53006 * 113.61096 * 139.97884 * 19 18 17 21 21 C 1.53002 * 113.61471 * 270.79457 * 19 18 17 22 22 C 1.53781 * 87.17620 * 25.38900 * 19 18 17 23 23 H 1.09003 * 109.46839 * 269.99234 * 1 2 3 24 24 H 1.09001 * 109.47537 * 29.99560 * 1 2 3 25 25 H 1.09003 * 109.47580 * 149.99967 * 1 2 3 26 26 H 1.09004 * 109.46714 * 30.00823 * 3 2 1 27 27 H 1.08998 * 109.47206 * 149.99980 * 3 2 1 28 28 H 0.97000 * 120.00241 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47130 * 60.00325 * 14 12 2 30 30 H 1.08994 * 109.47249 * 300.00111 * 14 12 2 31 31 H 1.08996 * 109.47270 * 183.95197 * 16 15 14 32 32 H 1.08998 * 109.47472 * 303.95277 * 16 15 14 33 33 H 1.09007 * 109.47209 * 63.95555 * 16 15 14 34 34 H 1.09004 * 112.85111 * 311.20201 * 17 15 14 35 35 H 1.08997 * 113.61737 * 105.38463 * 18 17 15 36 36 H 1.09000 * 113.61138 * 334.47603 * 18 17 15 37 37 H 1.09001 * 109.47002 * 181.52532 * 20 19 18 38 38 H 1.08993 * 109.46955 * 301.52970 * 20 19 18 39 39 H 1.09000 * 109.47050 * 61.52798 * 20 19 18 40 40 H 1.08999 * 109.47105 * 298.47603 * 21 19 18 41 41 H 1.09000 * 109.46611 * 58.47476 * 21 19 18 42 42 H 1.08998 * 109.47047 * 178.47668 * 21 19 18 43 43 H 1.08998 * 113.61545 * 89.15547 * 22 19 18 44 44 H 1.08993 * 113.61303 * 220.06004 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1267 2.8777 -1.6726 7 7 3.5541 3.6177 -0.6730 8 14 3.4385 3.4167 -3.4337 9 1 2.8614 2.4162 -4.3672 10 1 2.8015 4.7376 -3.6673 11 1 4.9012 3.5245 -3.6668 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5888 -0.0018 16 6 3.1062 -3.6276 1.2510 17 6 1.6554 -4.8665 -0.2400 18 6 2.6012 -6.0791 -0.2528 19 6 1.7671 -6.6177 -1.4272 20 6 2.6070 -7.2712 -2.5265 21 6 0.5822 -7.4822 -0.9917 22 6 1.3873 -5.1582 -1.7277 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5140 27 1 3.1499 1.1384 0.5138 28 1 4.0309 4.4436 -0.8502 29 1 0.7584 -2.5299 -0.8903 30 1 0.7591 -2.5303 0.8896 31 1 3.8532 -4.4194 1.1956 32 1 3.6030 -2.6694 1.4029 33 1 2.4309 -3.8230 2.0841 34 1 0.7800 -5.0026 0.3951 35 1 2.5370 -6.6925 0.6459 36 1 3.6270 -5.8298 -0.5240 37 1 1.9541 -7.6032 -3.3337 38 1 3.3247 -6.5481 -2.9137 39 1 3.1406 -8.1281 -2.1151 40 1 0.9486 -8.3565 -0.4537 41 1 -0.0708 -6.9018 -0.3400 42 1 0.0247 -7.8042 -1.8713 43 1 2.0807 -4.6567 -2.4028 44 1 0.3446 -5.0292 -2.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395500798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -32.889343 kcal Electronic energy + Delta-G solvation = -21226.434914 eV Core-core repulsion = 18178.712229 eV Total energy + Delta-G solvation = -3047.722685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18002 -40.27345 -36.95506 -36.18917 -34.71815 -31.15069 -30.28520 -28.87351 -28.22466 -27.28265 -26.50442 -25.73635 -24.28599 -21.55448 -19.97899 -19.12979 -18.69675 -17.92797 -17.18249 -16.86609 -16.45792 -15.97846 -15.88288 -15.50463 -14.95088 -14.62524 -14.43871 -14.19742 -13.85120 -13.78573 -13.57865 -13.55198 -13.41501 -13.14752 -12.86913 -12.69618 -12.62120 -12.59971 -12.43358 -12.37243 -12.18702 -11.70767 -11.67077 -11.57282 -11.15838 -10.89108 -10.65154 -10.43178 -9.40309 -9.18390 -8.22452 -6.37308 1.35609 1.38511 1.50361 1.88063 2.27249 2.41770 3.06566 3.08312 3.54967 3.73184 3.75819 3.86594 3.95362 4.25596 4.27726 4.39161 4.44904 4.52411 4.58300 4.61871 4.71964 4.82364 4.84112 4.91586 4.94985 4.97845 4.99855 5.01464 5.06730 5.12476 5.22141 5.23278 5.26389 5.26945 5.54619 5.57343 5.66715 5.84867 5.99391 6.06943 6.27438 6.71285 6.83313 7.29331 7.55281 8.84663 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.004077 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.067925 B = 6866.235512 C = 7243.730046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.579 6.579 14 C 0.055 3.945 15 N -0.536 5.536 16 C 0.029 3.971 17 C 0.053 3.947 18 C -0.118 4.118 19 C -0.082 4.082 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.121 4.121 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.023 0.977 27 H -0.004 1.004 28 H 0.267 0.733 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 -21.675 0.692 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.459 6.459 14 C -0.076 4.076 15 N -0.260 5.260 16 C -0.119 4.119 17 C -0.054 4.054 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.191 4.191 21 C -0.181 4.181 22 C -0.159 4.159 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.041 0.959 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.269 -21.425 0.365 23.347 hybrid contribution 0.138 0.942 0.004 0.952 sum -9.131 -20.483 0.370 22.429 Atomic orbital electron populations 1.21915 0.77980 1.03942 1.02470 1.48206 1.08365 1.06341 1.71793 1.18715 0.91002 0.80396 0.95929 1.21739 1.36698 1.06450 0.93081 0.93010 1.25868 0.94894 0.96440 1.02026 1.70055 1.39036 1.14846 1.32984 0.85358 0.77871 0.78413 0.79093 1.19191 1.19222 1.20791 1.21253 0.88041 0.86275 0.76192 1.90603 1.16377 1.87710 1.51190 1.21894 0.93851 0.87718 1.04091 1.61794 1.25530 1.02512 1.36211 1.22334 0.97923 1.02525 0.89106 1.23315 0.96775 0.87449 0.97885 1.23091 0.98246 0.95311 0.98934 1.21671 0.96634 0.94143 0.95783 1.21697 0.99291 1.00328 0.97769 1.21591 0.95940 0.99035 1.01580 1.23154 1.01577 0.95862 0.95274 0.91202 0.91533 0.88994 0.95916 0.98613 0.92405 0.86683 0.89980 0.90728 0.93128 0.94802 0.90179 0.90455 0.90876 0.91867 0.93718 0.91939 0.91649 0.92173 0.91656 0.91360 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.61 -26.82 2.86 -851.12 -2.43 -29.25 16 3 C 0.26 14.51 5.16 85.63 0.44 14.95 16 4 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 8 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 C 0.49 21.31 7.37 87.66 0.65 21.95 16 13 O -0.58 -31.10 13.91 -3.02 -0.04 -31.14 16 14 C 0.06 1.64 3.97 85.56 0.34 1.98 16 15 N -0.54 -15.91 4.47 -898.16 -4.01 -19.92 16 16 C 0.03 0.86 8.97 127.69 1.14 2.01 16 17 C 0.05 1.14 2.85 45.50 0.13 1.27 16 18 C -0.12 -2.27 5.76 31.12 0.18 -2.09 16 19 C -0.08 -1.34 1.39 -51.65 -0.07 -1.42 16 20 C -0.13 -2.14 9.18 71.98 0.66 -1.48 16 21 C -0.12 -1.52 9.07 71.98 0.65 -0.87 16 22 C -0.12 -2.45 6.81 31.18 0.21 -2.24 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 25 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 26 H 0.02 1.28 8.07 -2.38 -0.02 1.26 16 27 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.12 2.96 7.17 -2.38 -0.02 2.95 16 30 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 31 H 0.07 2.01 7.05 -2.39 -0.02 1.99 16 32 H 0.05 1.93 5.82 -2.39 -0.01 1.92 16 33 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.08 1.45 7.64 -2.39 -0.02 1.43 16 35 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 0.84 7.98 -2.39 -0.02 0.82 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.70 7.34 -2.39 -0.02 0.68 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.07 1.74 7.99 -2.39 -0.02 1.72 16 44 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -75.07 349.06 3.11 -71.95 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.94 Total: 10.68 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.35 Total: 6.75 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -6.16 Total: -106.23 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.04 Total: -31.14 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.07 3.11 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395500798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.065 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds