Wall clock time and date at job start Mon Mar 30 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 C 1.52999 * 109.47168 * 240.00125 * 2 1 3 5 5 C 1.53003 * 109.46897 * 120.00230 * 2 1 3 6 6 C 1.53004 * 109.47194 * 54.76670 * 5 2 1 7 7 H 1.08999 * 109.47449 * 306.29675 * 6 5 2 8 8 N 1.46904 * 109.46383 * 66.29795 * 6 5 2 9 9 C 1.50692 * 109.46921 * 186.29130 * 6 5 2 10 10 O 1.21279 * 120.00681 * 260.00538 * 9 6 5 11 11 N 1.34782 * 119.99697 * 80.00432 * 9 6 5 12 12 C 1.46507 * 119.99867 * 179.97438 * 11 9 6 13 13 C 1.50696 * 109.47250 * 270.00407 * 12 11 9 14 14 H 1.07991 * 120.00234 * 359.72529 * 13 12 11 15 15 C 1.37877 * 119.99758 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99857 * 359.72063 * 15 13 12 17 17 Si 1.86795 * 120.00007 * 179.72564 * 15 13 12 18 18 H 1.48497 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47434 * 119.99755 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99495 * 17 15 13 21 21 C 1.46492 * 119.99979 * 0.02562 * 11 9 6 22 22 C 1.53005 * 117.49952 * 188.74329 * 21 11 9 23 23 C 1.52999 * 117.50207 * 120.08708 * 21 11 9 24 24 H 1.08992 * 109.47090 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46962 * 60.00316 * 1 2 3 26 26 H 1.09004 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46799 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47574 * 300.00156 * 3 2 1 29 29 H 1.09003 * 109.46996 * 60.00054 * 3 2 1 30 30 H 1.09003 * 109.46832 * 308.31670 * 4 2 1 31 31 H 1.08995 * 109.47042 * 68.31624 * 4 2 1 32 32 H 1.09000 * 109.47082 * 188.31620 * 4 2 1 33 33 H 1.08999 * 109.46646 * 294.76912 * 5 2 1 34 34 H 1.08992 * 109.47173 * 174.77273 * 5 2 1 35 35 H 1.00893 * 111.00186 * 60.00188 * 8 6 5 36 36 H 1.00898 * 110.99688 * 183.95351 * 8 6 5 37 37 H 1.09001 * 109.46959 * 150.00006 * 12 11 9 38 38 H 1.09009 * 109.46753 * 30.00831 * 12 11 9 39 39 H 0.97000 * 119.99904 * 179.97438 * 16 15 13 40 40 H 1.09002 * 115.55218 * 334.41107 * 21 11 9 41 41 H 1.09000 * 117.49402 * 0.02562 * 22 21 11 42 42 H 1.09003 * 117.49871 * 145.01937 * 22 21 11 43 43 H 1.08995 * 117.50276 * 214.98247 * 23 21 11 44 44 H 1.09002 * 117.49797 * 359.97389 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.4254 -2.1209 1.3167 7 1 0.3401 -2.0448 1.2496 8 7 1.9295 -2.9312 0.1999 9 6 1.8035 -2.7731 2.6215 10 8 2.7098 -3.5783 2.6568 11 7 1.1346 -2.4617 3.7493 12 6 1.5018 -3.0962 5.0177 13 6 0.7050 -4.3629 5.1950 14 1 -0.0072 -4.6629 4.4407 15 6 0.8808 -5.1358 6.3232 16 7 1.7479 -4.7703 7.2420 17 14 -0.1124 -6.7019 6.5465 18 1 -1.0120 -6.8882 5.3799 19 1 0.8091 -7.8618 6.6518 20 1 -0.9242 -6.6008 7.7859 21 6 0.0395 -1.4895 3.7066 22 6 -0.5446 -1.0242 5.0421 23 6 -1.3470 -1.9675 4.1425 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.5604 -1.6970 -1.3267 31 1 1.8032 -0.1288 -2.1329 32 1 3.1199 -0.8517 -1.1780 33 1 1.7551 -0.1562 2.1367 34 1 3.1259 -0.8031 1.2037 35 1 2.9340 -3.0168 0.2398 36 1 1.4897 -3.8392 0.1846 37 1 1.2877 -2.4141 5.8406 38 1 2.5656 -3.3340 5.0104 39 1 1.8714 -5.3138 8.0359 40 1 0.0893 -0.7605 2.8978 41 1 -0.1137 -1.4412 5.9524 42 1 -0.8794 0.0108 5.1117 43 1 -2.2094 -1.5528 3.6206 44 1 -1.4445 -3.0055 4.4606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401347020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:09 Heat of formation + Delta-G solvation = -19.876387 kcal Electronic energy + Delta-G solvation = -22093.528201 eV Core-core repulsion = 19046.369800 eV Total energy + Delta-G solvation = -3047.158401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83481 -37.72982 -36.76372 -33.53046 -33.05719 -32.00894 -28.77849 -27.28962 -27.15851 -26.88795 -24.00824 -22.56831 -21.89893 -21.21644 -18.65699 -18.28428 -17.11557 -16.51107 -15.87173 -15.45085 -14.75613 -14.49962 -14.28981 -14.07651 -13.96057 -13.66726 -13.41565 -13.03662 -12.40314 -12.25981 -12.02146 -11.76009 -11.66299 -11.47784 -11.38849 -11.20877 -11.09285 -10.97157 -10.59170 -10.56186 -10.48893 -10.44987 -10.35917 -10.11574 -10.04492 -9.48192 -9.33222 -8.46608 -8.17885 -7.54223 -6.08168 -4.12559 3.24816 3.26328 3.34444 3.38022 3.83326 4.37612 4.42455 4.66436 4.78807 4.91581 5.01429 5.13867 5.25971 5.28505 5.36390 5.37805 5.47545 5.53187 5.65328 5.67764 5.78185 5.86384 5.89933 6.02041 6.06925 6.10586 6.11853 6.14900 6.29668 6.37269 6.50131 6.56577 6.76294 6.82469 7.03258 7.21580 7.40422 7.50108 7.57791 7.88196 8.19076 8.39310 8.85166 9.02563 9.52213 10.99782 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.005381 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.293611 B = 5202.160713 C = 5604.193599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.096 4.096 6 C 0.070 3.930 7 H 0.103 0.897 8 N -0.813 5.813 9 C 0.476 3.524 10 O -0.547 6.547 11 N -0.565 5.565 12 C 0.239 3.761 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.065 3.935 22 C -0.183 4.183 23 C -0.192 4.192 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.346 0.654 36 H 0.340 0.660 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 11.320 -12.547 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.058 4.058 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.135 4.135 6 C -0.046 4.046 7 H 0.120 0.880 8 N -0.341 5.341 9 C 0.261 3.739 10 O -0.425 6.425 11 N -0.295 5.295 12 C 0.120 3.880 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.041 4.041 22 C -0.221 4.221 23 C -0.231 4.231 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.609 11.397 -12.806 17.519 hybrid contribution -0.230 -1.511 1.211 1.950 sum -3.839 9.886 -11.595 15.714 Atomic orbital electron populations 1.21966 0.95029 1.02052 1.01102 1.20396 0.95324 0.94395 0.95695 1.21910 1.00883 0.95943 1.01274 1.22151 1.00976 1.02475 0.94583 1.21635 1.00674 0.93206 0.97951 1.21697 1.01364 0.94131 0.87363 0.87952 1.59521 1.12145 1.20545 1.41901 1.21637 0.82814 0.83023 0.86379 1.90665 1.30838 1.35184 1.85844 1.47780 1.31244 1.40134 1.10319 1.19373 0.97374 0.92403 0.78867 1.21415 1.22527 1.07216 1.04813 0.92451 1.24930 0.95444 0.97896 0.95807 1.69941 1.34675 1.38917 1.09767 0.86476 0.79933 0.83301 0.77927 1.19821 1.20905 1.20943 1.21663 0.87989 0.95202 0.99234 1.23300 1.03889 0.99072 0.95826 1.23453 0.94024 1.01804 1.03825 0.93116 0.93031 0.91895 0.92930 0.92920 0.93003 0.88229 0.94868 0.93741 0.91261 0.91538 0.84016 0.84787 0.94496 0.94003 0.92775 0.86368 0.87004 0.89073 0.89435 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.98 37.16 0.30 -1.14 16 2 C -0.06 -0.62 0.80 -154.50 -0.12 -0.74 16 3 C -0.14 -1.38 8.47 37.16 0.31 -1.07 16 4 C -0.14 -1.56 7.49 37.16 0.28 -1.28 16 5 C -0.10 -1.23 3.70 -26.73 -0.10 -1.33 16 6 C 0.07 1.02 1.98 -68.86 -0.14 0.88 16 7 H 0.10 1.42 5.00 -51.93 -0.26 1.16 16 8 N -0.81 -10.83 5.57 -5.65 -0.03 -10.87 16 9 C 0.48 9.66 6.91 -10.99 -0.08 9.58 16 10 O -0.55 -13.43 15.83 5.56 0.09 -13.34 16 11 N -0.57 -11.80 2.80 -167.47 -0.47 -12.27 16 12 C 0.24 6.17 4.77 -5.19 -0.02 6.15 16 13 C -0.52 -14.45 8.39 -34.44 -0.29 -14.74 16 14 H 0.06 1.60 7.30 -52.49 -0.38 1.22 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.07 1.07 5.45 -67.93 -0.37 0.70 16 22 C -0.18 -2.93 9.80 -26.69 -0.26 -3.19 16 23 C -0.19 -3.09 10.19 -26.70 -0.27 -3.36 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.66 6.21 -51.93 -0.32 0.34 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 1.15 5.75 -51.93 -0.30 0.85 16 31 H 0.03 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.07 0.89 6.61 -51.93 -0.34 0.55 16 34 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 35 H 0.35 4.87 8.58 -39.30 -0.34 4.53 16 36 H 0.34 4.62 9.06 -39.29 -0.36 4.27 16 37 H 0.04 0.96 5.80 -51.93 -0.30 0.66 16 38 H 0.04 1.24 7.42 -51.92 -0.39 0.86 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 1.59 5.45 -51.93 -0.28 1.31 16 41 H 0.11 2.13 6.02 -51.93 -0.31 1.82 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.11 2.17 6.71 -51.93 -0.35 1.82 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -30.81 339.32 -7.73 -38.54 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.29 Total: 9.62 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.86 Total: -7.91 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.24 Total: -48.74 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.81 -7.73 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401347020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds