Wall clock time and date at job start Mon Mar 30 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 C 1.52999 * 109.47168 * 240.00125 * 2 1 3 5 5 C 1.53003 * 109.46897 * 120.00230 * 2 1 3 6 6 C 1.53004 * 109.47194 * 54.76670 * 5 2 1 7 7 H 1.08999 * 109.47449 * 306.29675 * 6 5 2 8 8 N 1.46904 * 109.46383 * 66.29795 * 6 5 2 9 9 C 1.50692 * 109.46921 * 186.29130 * 6 5 2 10 10 O 1.21279 * 120.00681 * 260.00538 * 9 6 5 11 11 N 1.34782 * 119.99697 * 80.00432 * 9 6 5 12 12 C 1.46507 * 119.99867 * 179.97438 * 11 9 6 13 13 C 1.50696 * 109.47250 * 270.00407 * 12 11 9 14 14 H 1.07991 * 120.00234 * 359.72529 * 13 12 11 15 15 C 1.37877 * 119.99758 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99857 * 359.72063 * 15 13 12 17 17 Si 1.86795 * 120.00007 * 179.72564 * 15 13 12 18 18 H 1.48497 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47434 * 119.99755 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99495 * 17 15 13 21 21 C 1.46492 * 119.99979 * 0.02562 * 11 9 6 22 22 C 1.53005 * 117.49952 * 188.74329 * 21 11 9 23 23 C 1.52999 * 117.50207 * 120.08708 * 21 11 9 24 24 H 1.08992 * 109.47090 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46962 * 60.00316 * 1 2 3 26 26 H 1.09004 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46799 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47574 * 300.00156 * 3 2 1 29 29 H 1.09003 * 109.46996 * 60.00054 * 3 2 1 30 30 H 1.09003 * 109.46832 * 308.31670 * 4 2 1 31 31 H 1.08995 * 109.47042 * 68.31624 * 4 2 1 32 32 H 1.09000 * 109.47082 * 188.31620 * 4 2 1 33 33 H 1.08999 * 109.46646 * 294.76912 * 5 2 1 34 34 H 1.08992 * 109.47173 * 174.77273 * 5 2 1 35 35 H 1.00893 * 111.00186 * 60.00188 * 8 6 5 36 36 H 1.00898 * 110.99688 * 183.95351 * 8 6 5 37 37 H 1.09001 * 109.46959 * 150.00006 * 12 11 9 38 38 H 1.09009 * 109.46753 * 30.00831 * 12 11 9 39 39 H 0.97000 * 119.99904 * 179.97438 * 16 15 13 40 40 H 1.09002 * 115.55218 * 334.41107 * 21 11 9 41 41 H 1.09000 * 117.49402 * 0.02562 * 22 21 11 42 42 H 1.09003 * 117.49871 * 145.01937 * 22 21 11 43 43 H 1.08995 * 117.50276 * 214.98247 * 23 21 11 44 44 H 1.09002 * 117.49797 * 359.97389 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.4254 -2.1209 1.3167 7 1 0.3401 -2.0448 1.2496 8 7 1.9295 -2.9312 0.1999 9 6 1.8035 -2.7731 2.6215 10 8 2.7098 -3.5783 2.6568 11 7 1.1346 -2.4617 3.7493 12 6 1.5018 -3.0962 5.0177 13 6 0.7050 -4.3629 5.1950 14 1 -0.0072 -4.6629 4.4407 15 6 0.8808 -5.1358 6.3232 16 7 1.7479 -4.7703 7.2420 17 14 -0.1124 -6.7019 6.5465 18 1 -1.0120 -6.8882 5.3799 19 1 0.8091 -7.8618 6.6518 20 1 -0.9242 -6.6008 7.7859 21 6 0.0395 -1.4895 3.7066 22 6 -0.5446 -1.0242 5.0421 23 6 -1.3470 -1.9675 4.1425 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.5604 -1.6970 -1.3267 31 1 1.8032 -0.1288 -2.1329 32 1 3.1199 -0.8517 -1.1780 33 1 1.7551 -0.1562 2.1367 34 1 3.1259 -0.8031 1.2037 35 1 2.9340 -3.0168 0.2398 36 1 1.4897 -3.8392 0.1846 37 1 1.2877 -2.4141 5.8406 38 1 2.5656 -3.3340 5.0104 39 1 1.8714 -5.3138 8.0359 40 1 0.0893 -0.7605 2.8978 41 1 -0.1137 -1.4412 5.9524 42 1 -0.8794 0.0108 5.1117 43 1 -2.2094 -1.5528 3.6206 44 1 -1.4445 -3.0055 4.4606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401347020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:08 Heat of formation + Delta-G solvation = -39.978803 kcal Electronic energy + Delta-G solvation = -22094.399907 eV Core-core repulsion = 19046.369800 eV Total energy + Delta-G solvation = -3048.030107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30422 -38.86668 -38.24057 -35.26832 -34.47955 -33.79307 -30.27567 -28.79216 -28.03080 -27.70732 -25.74201 -24.13679 -23.21250 -22.66568 -19.83184 -19.52993 -18.67677 -18.52822 -17.31017 -16.84187 -16.51428 -15.66616 -15.61069 -15.36472 -15.32354 -14.77255 -14.72418 -14.34439 -14.11272 -13.44002 -13.37027 -13.19895 -12.92004 -12.81898 -12.74463 -12.52662 -12.41284 -12.25403 -12.14457 -12.13453 -11.99810 -11.55881 -11.50983 -11.35445 -11.32720 -11.26848 -10.75983 -10.65919 -9.47329 -9.25640 -8.25034 -6.38830 1.32167 1.34160 1.45584 1.68379 2.22326 2.38889 3.03719 3.07192 3.45550 3.66786 3.91755 3.96394 4.04840 4.08534 4.14421 4.21925 4.33477 4.52202 4.75360 4.81145 4.84419 4.92324 4.94475 5.00815 5.05432 5.09496 5.15479 5.15654 5.24152 5.26818 5.34845 5.46285 5.46661 5.53213 5.54559 5.68982 5.80353 5.92528 6.02755 6.04288 6.38687 6.67057 6.77522 7.24583 7.41506 8.81957 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.005381 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.293611 B = 5202.160713 C = 5604.193599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.092 4.092 6 C 0.089 3.911 7 H 0.121 0.879 8 N -0.797 5.797 9 C 0.465 3.535 10 O -0.601 6.601 11 N -0.572 5.572 12 C 0.255 3.745 13 C -0.528 4.528 14 H 0.051 0.949 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.055 3.945 22 C -0.181 4.181 23 C -0.185 4.185 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.343 0.657 36 H 0.340 0.660 37 H 0.029 0.971 38 H -0.009 1.009 39 H 0.266 0.734 40 H 0.159 0.841 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 12.790 -14.165 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.130 4.130 6 C -0.027 4.027 7 H 0.139 0.861 8 N -0.324 5.324 9 C 0.253 3.747 10 O -0.483 6.483 11 N -0.301 5.301 12 C 0.134 3.866 13 C -0.567 4.567 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.049 4.049 22 C -0.218 4.218 23 C -0.224 4.224 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.047 0.953 38 H 0.009 0.991 39 H 0.075 0.925 40 H 0.176 0.824 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.961 12.900 -14.448 20.265 hybrid contribution 0.532 -1.941 1.710 2.641 sum -5.429 10.959 -12.738 17.658 Atomic orbital electron populations 1.21974 0.93866 1.02050 1.02307 1.20362 0.96188 0.94664 0.94042 1.21895 1.00624 0.95166 1.02199 1.22110 1.00340 1.02330 0.95222 1.21649 0.99808 0.92086 0.99507 1.21743 1.02403 0.94648 0.83874 0.86123 1.59601 1.11878 1.20499 1.40421 1.22887 0.81667 0.82333 0.87860 1.90627 1.33142 1.37679 1.86812 1.47788 1.32677 1.40761 1.08837 1.18810 0.94131 0.92337 0.81351 1.21604 1.22363 1.08034 1.04685 0.93044 1.25817 0.96487 1.01265 0.95514 1.70060 1.36117 1.40373 1.10348 0.85424 0.78479 0.78843 0.78430 1.19101 1.20889 1.19501 1.22119 0.86747 0.95033 1.00952 1.23311 1.03538 1.01151 0.93826 1.23442 0.95106 0.99982 1.03841 0.92034 0.91832 0.92422 0.93459 0.91685 0.92398 0.88950 0.93756 0.94627 0.90966 0.92958 0.84415 0.84832 0.95271 0.99131 0.92506 0.82411 0.90980 0.84785 0.85010 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.98 71.98 0.57 -1.71 16 2 C -0.05 -0.97 0.80 -52.18 -0.04 -1.01 16 3 C -0.14 -2.31 8.47 71.98 0.61 -1.70 16 4 C -0.14 -2.76 7.49 71.98 0.54 -2.22 16 5 C -0.09 -2.20 3.70 30.60 0.11 -2.09 16 6 C 0.09 2.48 1.98 44.17 0.09 2.57 16 7 H 0.12 3.00 5.00 -2.39 -0.01 2.99 16 8 N -0.80 -20.64 5.57 -171.80 -0.96 -21.59 16 9 C 0.46 19.20 6.91 87.65 0.61 19.81 16 10 O -0.60 -30.89 15.83 -3.03 -0.05 -30.93 16 11 N -0.57 -24.34 2.80 -802.13 -2.24 -26.58 16 12 C 0.26 13.88 4.77 85.63 0.41 14.29 16 13 C -0.53 -30.35 8.39 25.60 0.21 -30.14 16 14 H 0.05 2.95 7.30 -2.92 -0.02 2.93 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 17 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.06 1.73 5.45 44.99 0.25 1.97 16 22 C -0.18 -5.48 9.80 30.62 0.30 -5.18 16 23 C -0.19 -5.55 10.19 30.62 0.31 -5.24 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.98 6.21 -2.39 -0.01 0.97 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.92 5.75 -2.39 -0.01 1.91 16 31 H 0.04 0.76 8.13 -2.39 -0.02 0.74 16 32 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.07 1.69 6.61 -2.39 -0.02 1.67 16 34 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.34 9.66 8.58 -89.70 -0.77 8.89 16 36 H 0.34 9.02 9.06 -89.70 -0.81 8.21 16 37 H 0.03 1.62 5.80 -2.39 -0.01 1.61 16 38 H -0.01 -0.60 7.42 -2.38 -0.02 -0.62 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.16 3.64 5.45 -2.39 -0.01 3.62 16 41 H 0.07 2.81 6.02 -2.39 -0.01 2.80 16 42 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.13 2.79 8.14 -2.39 -0.02 2.78 16 44 H 0.07 2.82 6.71 -2.39 -0.02 2.80 16 Total: -1.00 -71.07 339.32 2.91 -68.16 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.58 Total: 29.70 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 4.43 Total: -9.72 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -2.92 Total: -104.49 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.07 2.91 -68.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401347020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.177 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds